BAC Information

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BAC

Clone NameB6Ng01-178B12
Chromosome8 (Build37)
Map Location 19,702,771 - 19,735,472
singlet/doubletdoublet
Overlap geneEG665730, 4930467E23Rik
Upstream geneMcph1, Angpt2, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561, LOC624198
Downstream geneLOC100041567, LOC547150, LOC100040599, EG665822, 6820431F20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178B12.bB6Ng01-178B12.g
ACCGA005179GA005180
length1,227155
definitionB6Ng01-178B12.b B6Ng01-178B12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,734,250 - 19,735,472)(19,702,771 - 19,702,925)
sequence
gaattcagtacaagatttataacgctaattaaagtagtagactctgcgga
aagaaatgaactacttatatatccactatgaaagctccatctgaaatggg
gaagaaaaatgtcttgaactgccgaatcaccaaagttgctgggtacctgt
gctaggacagtttaagaacatctcccagtgaaaggtagttttctgctgac
ttggacatttcaagactcaaacatcatttggaaacactgcttggtacctg
tgattacatatggtataattctaaagaaatggcttatgctgtcatctttg
aggtcacaggttataagttttcagacttagggactgtgggtgtttgtcat
ggtagaacacttgccatagacacctatggctcttaattcagtgacaaaca
ctttcaaaagtaaaaatacaatggctgtggagcagcaaccgatctttgtt
accctttggcttggtggatggctcataaggtgaactcctgaactaggcag
tgatccctagtgcatgctgttctttgttgtggtgaaactgtctcttttcc
agctcccacttcatgtgtgctaagcttcctaactatgcctctgagtttct
tgcaatctctctatcattttaatactcctgacttaagcaattgtcaccct
caagagcagcactaagattgaagaaaggaagaaactgtacctttttgcac
actttgctgctaaaaattctaccatttcaggtttctgttcaaatgttgca
agttgcaatggtgtcaagccatactataaaggaaaaaaataatgcatttt
acaaaactacttgtttctcaacaatctgctcatcaccgattttgtgaaga
taagtagacaagaaaagagttacaagggatcatttatcctacaacacctg
ctgaactttcccacacacagctgtctttttccctttgacataccttttcc
ctgttcaacactgcctataacagggctccctttcagaaactcttccccaa
acactcaaggattgcaatcttctttagctccgtggaagtggggcctccat
tgccaacagcccagaaatacagagtacactgtgctatgcccctgtgaagg
agtgttctcagagggtctggcagaagtttcctcaccttgtattcaatata
tttcttttctaacttaaggattatctcaaagctgacacggctctctccca
atgttacatctaaaccctgtttaaacc
cagaaatttctccctctctaaggtgactctgaaagcctgggttgactagc
aacattggcaaatcctgaaggcctaccaggctttggcgccagggtcccag
gaagtgagtgactcttgccttgggctgcagtagaattgttgggggtgggg
tgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_19734250_19735472
seq2: B6Ng01-178B12.b_34_1260 (reverse)

seq1  GGTTTAAAAA--GTTTTGATGT-ACA-TGGGAGAG-GC--TGTCAAGCTT  43
      |||||||| |  |||| ||||| ||| |||||||| ||  |||| |||||
seq2  GGTTTAAACAGGGTTTAGATGTAACATTGGGAGAGAGCCGTGTC-AGCTT  49

seq1  CTGAGATAAATTCTTAGTTTAGAAAAGAAATATATTTGAAATACAGGTTG  93
       |||||| ||| ||||  ||||||||||||||||||   |||||| | ||
seq2  -TGAGAT-AATCCTTAAGTTAGAAAAGAAATATATT--GAATACAAGGTG  95

seq1  A-GAAAC-TCTGCCCCAGACCCCTCCTGAGCACACTCCTTCAACAGGGGC  141
      | ||||| ||||  ||||||||   ||||| |||||||||| ||||||||
seq2  AGGAAACTTCTG--CCAGACCC--TCTGAGAACACTCCTTC-ACAGGGGC  140

seq1  ATAGCACAGTGTACTCTGTA-TTCTGGGCTG-TGGCAATGGAGGCCCCAC  189
      |||||||||||||||||||| |||||||||| ||||||||||||||||||
seq2  ATAGCACAGTGTACTCTGTATTTCTGGGCTGTTGGCAATGGAGGCCCCAC  190

seq1  -TCCACGGAGCT-AAGAAGATTGCAATCCTTGAGTGTTTGGGG-AGAG-T  235
       ||||||||||| |||||||||||||||||||||||||||||| |||| |
seq2  TTCCACGGAGCTAAAGAAGATTGCAATCCTTGAGTGTTTGGGGAAGAGTT  240

seq1  TCTGGAAGGGAGCCCTGTTATAGGCAGTGTTGGACAGGGAAAAGGTGTGT  285
      |||| ||||||||||||||||||||||||||| ||||||||||||| |||
seq2  TCTGAAAGGGAGCCCTGTTATAGGCAGTGTTGAACAGGGAAAAGGTATGT  290

seq1  CAAAGGG-AAAAGACAGCTGTGTGTGGGAAAGTTCAGCAGGTGTTGTAGG  334
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGAAAAAGACAGCTGTGTGTGGGAAAGTTCAGCAGGTGTTGTAGG  340

seq1  ATGAATGATCCCTTGTGACTCTTTTTTTGTCTACTTATCTTCACAAAATC  384
      || ||||||||||||| |||||||| ||||||||||||||||||||||||
seq2  ATAAATGATCCCTTGTAACTCTTTTCTTGTCTACTTATCTTCACAAAATC  390

seq1  GGCGATGAGCAGATTGTTGAGAAACAAGTAGTTTTGTAAAATGCATTATT  434
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGAGCAGATTGTTGAGAAACAAGTAGTTTTGTAAAATGCATTATT  440

seq1  TTTTTCCTTTATAGTATGGCTTGACACCATTGCAACTTGCAACATTTGAA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTTTATAGTATGGCTTGACACCATTGCAACTTGCAACATTTGAA  490

seq1  CAGAAACCTGAAATGGTAGAATTTTTAGCAGCAAAGTGTGCAAAAAGGTA  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACCTGAAATGGTAGAATTTTTAGCAGCAAAGTGTGCAAAAAGGTA  540

seq1  CAGTTTCTTCCTTTCTTCAATCTTAGTGCTGCTCTTGAGGGTGACAATTG  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCTTCCTTTCTTCAATCTTAGTGCTGCTCTTGAGGGTGACAATTG  590

seq1  CTTAAGTCAGGAGTATTAAAATGATAGAGAGATTGCAAGAAACTCAGAGG  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGTCAGGAGTATTAAAATGATAGAGAGATTGCAAGAAACTCAGAGG  640

seq1  CACATAGTTAGGAAGCTTAGCACACATGAAGTGGGAGCTGGAAAAGAGAC  684
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  --CATAGTTAGGAAGCTTAGCACACATGAAGTGGGAGCTGGAAAAGAGAC  688

seq1  AGTTTCACCACAACAAAGAACAGCATGCATTAAGGATCACTGCCTAGTTC  734
      ||||||||||||||||||||||||||||| || |||||||||||||||||
seq2  AGTTTCACCACAACAAAGAACAGCATGCACTAGGGATCACTGCCTAGTTC  738

seq1  AGGAGTTCACCTCATGAGCCATCCACCAAGCCAAAGGGTAACAAAGATCG  784
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTCACCTTATGAGCCATCCACCAAGCCAAAGGGTAACAAAGATCG  788

seq1  GTTGCTGCTCCACAGCCATTGTATTTTTACTTTTGAAAGTGTTTGTCACT  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGCTCCACAGCCATTGTATTTTTACTTTTGAAAGTGTTTGTCACT  838

seq1  GAATTAAGAGCCATAGGTGTCTATGGCAAGTGTTCTACCATGACAAACAC  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAGAGCCATAGGTGTCTATGGCAAGTGTTCTACCATGACAAACAC  888

seq1  CCACAGTCCCTAAGTCTGAAAACTTATAACCTGTGACCTCAAAGATGACA  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTCCCTAAGTCTGAAAACTTATAACCTGTGACCTCAAAGATGACA  938

seq1  GCATAAGCCATTTCTTTAGAATTATACCATACGTAATCACAGGTACCAAG  984
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCATAAGCCATTTCTTTAGAATTATACCATATGTAATCACAGGTACCAAG  988

seq1  CAGTGTTTCCAAATGATGTTTGAGTCTTGAAATGTCCAAGTCAGCAGAAA  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTTCCAAATGATGTTTGAGTCTTGAAATGTCCAAGTCAGCAGAAA  1038

seq1  ACTACCTTTCACTGGGAGATGTTCTTAAACTGTCCTAGCACAGGTACCCA  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCTTTCACTGGGAGATGTTCTTAAACTGTCCTAGCACAGGTACCCA  1088

seq1  GCAACTTTGGTGATTCGGCAGTTCAAGACATTTTTCTTCCCCATTTCAGA  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTTTGGTGATTCGGCAGTTCAAGACATTTTTCTTCCCCATTTCAGA  1138

seq1  TGGAGCTTTCATAGTGGATATATAAGTAGTTCATTTCTTTCCGCAGAGTC  1184
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTTTCATAGTGGATATATAAGTAGTTCATTTCTTTCCGCAGAGTC  1188

seq1  TACTACTTTAATTAGCGTTATAAATCTTGTACTGAATTC  1223
      |||||||||||||||||||||||||||||||||||||||
seq2  TACTACTTTAATTAGCGTTATAAATCTTGTACTGAATTC  1227

seq1: chr8_19702771_19702925
seq2: B6Ng01-178B12.g_68_222

seq1  CAGAAATTTCTCCCTCTCTAAGGTGACTCTGAAAGCCTGGGTTGACTAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATTTCTCCCTCTCTAAGGTGACTCTGAAAGCCTGGGTTGACTAGC  50

seq1  AACATTGGCAAATCCTGAAGGCCTACCAGGCTTTGGCGCCAGGGTCCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGGCAAATCCTGAAGGCCTACCAGGCTTTGGCGCCAGGGTCCCAG  100

seq1  GAAGTGAGTGACTCTTGCCTTGGGCTGCAGTAGAATTGTTGGGGGTGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGAGTGACTCTTGCCTTGGGCTGCAGTAGAATTGTTGGGGGTGGGG  150

seq1  TGGGG  155
      |||||
seq2  TGGGG  155