BAC Information

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BAC

Clone NameB6Ng01-178F16
Chromosome8 (Build37)
Map Location 104,965,098 - 105,142,114
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneCdh11, EG667618, LOC100041368, 1600027J07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178F16.bB6Ng01-178F16.g
ACCGA005366GA005367
length594855
definitionB6Ng01-178F16.b B6Ng01-178F16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,965,098 - 104,965,690)(105,141,266 - 105,142,114)
sequence
gaattctgcaaagaaagctttgttttaggttcccagaggaaagaaatctg
gccttagtgcctgtaaaaggatagagaatcggttctgttaaaggagaggg
gggattagttctaagcagataataggtcagcagctttgtgggttgtctga
acctcttttctattctcaggggtacatatcacctttaggtgaacatgacc
cttagtgcaattctgcagctaataaatagtcattacatgtatccaacacc
tcacttacagagtcaaatagaatagtccttgccccgaaattatcctcaag
taatttaaaaagcatgaaatatatttgtaatgatttcataaaatctgatg
aaactcttcgctagtggggtaaaataaaatttgttttacccaatgtacaa
caaataaccagaaaaaggaagagagactgcatagagttacttccctgtct
acacaactaaccatttttcttttttaaaaaaggcagtgacagtccactta
tcagaaatatcaacaccaactctgcctctattcttaggttgcttttcctt
tgcaataatgttctttgggggtatgcggaaggggtggattcccc

gaattcacataaagccagaaggagagaactgaacacacaagttgtctttg
aacctccattcacacactattgcatacttaccctccttcatagtaaaaca
aaaagtgaatatttagcaaagaagaaggactaattagagtttttaaatag
atgcaaatttgaactatactttatggcagaggttattctagaaaacttgc
acaggagttttagtatgactttaaaattgtcctttcatagtatctacttt
ctaatcccttgtgcagactgaaaataatgaaggggactatattatattcc
tgtcatctctagccacacagtaagtttagatttttccaaacattaacact
tgtcaaaaacaaataaaaattgtgtctctataagtaataaattgttttaa
aattataagagttgaatgtcaatgtctttcttactgggttataaaataga
ctctggatccattaaatactctattaattgcactttcaaagttcatataa
atgggttgatagctgaacaccaagaatttttttaagacattgttagtggg
agtattaataagaatgaaaattctcagtgaaaaggtagcttgcaagttat
ggtttttttcttttttcttttttggtatttttctttttttaaaattagat
tttttctttatttacattttcaaatgctatcctcttttcctagttttcct
ctccataaatcccccatcccctctcccctaacccttcttccccaacccac
cccacttcagcttcctggccctggcattcccctatactggggcatagaat
cttcccaagaaccagggcctttcctttccattgaatggttgacagaccca
gaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_104965098_104965690
seq2: B6Ng01-178F16.b_50_643

seq1  GAATTCTGCAAAGAAAGCTTTGTTTTAGGTTCCCAGAGGAAAGAAATCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAAAGAAAGCTTTGTTTTAGGTTCCCAGAGGAAAGAAATCTG  50

seq1  GCCTTAGTGCCTGTAAAAGGATAGAGAATCGGTTCTGTTAAAGGAGAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAGTGCCTGTAAAAGGATAGAGAATCGGTTCTGTTAAAGGAGAGGG  100

seq1  GGGATTAGTTCTAAGCAGATAATAGGTCAGCAGCTTTGTGGGTTGTCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTAGTTCTAAGCAGATAATAGGTCAGCAGCTTTGTGGGTTGTCTGA  150

seq1  ACCTCTTTTCTATTCTCAGGGGTACATATCACCTTTAGGTGAACATGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTTTCTATTCTCAGGGGTACATATCACCTTTAGGTGAACATGACC  200

seq1  CTTAGTGCAATTCTGCAGCTAATAAATAGTCATTACATGTATCCAACACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTGCAATTCTGCAGCTAATAAATAGTCATTACATGTATCCAACACC  250

seq1  TCACTTACAGAGTCAAATAGAATAGTCCTTGCCCCGAAATTATCCTCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTACAGAGTCAAATAGAATAGTCCTTGCCCCGAAATTATCCTCAAG  300

seq1  TAATTTAAAAAGCATGAAATATATTTGTAATGATTTCATAAAATCTGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAAAAAGCATGAAATATATTTGTAATGATTTCATAAAATCTGATG  350

seq1  AAACTCTTCGCTAGTGGGGTAAAATAAAATTTGTTTTACCCAATGTACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTTCGCTAGTGGGGTAAAATAAAATTTGTTTTACCCAATGTACAA  400

seq1  CAAATAACCAGAAAAAGGAAGAGAGACTGCATAGAGTTACTTCCCTGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAACCAGAAAAAGGAAGAGAGACTGCATAGAGTTACTTCCCTGTCT  450

seq1  ACACAACTAACCATTTTTCTTTTTTAAAAAAGGCAGTGACAGTCCACTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACTAACCATTTTTCTTTTTTAAAAAAGGCAGTGACAGTCCACTTA  500

seq1  TCAGAAATATCAACACCAACTCTGCCTCTATTCTTAGGTTGCTTTTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATATCAACACCAACTCTGCCTCTATTCTTAGGTTGCTTTTCCTT  550

seq1  TGCAATAATGTTCTTTGGGGGTATGCGGAA-GGGTGGATTCCCC  593
      |||||||||||||||||||||||||||||| |||||||||||||
seq2  TGCAATAATGTTCTTTGGGGGTATGCGGAAGGGGTGGATTCCCC  594


seq1: chr8_105141266_105142114
seq2: B6Ng01-178F16.g_67_921 (reverse)

seq1  ATTTCTGGGTCTTGTCAACCA-TCAATGG-AAGGAAAGGCCCTTGGTCTT  48
      ||||||||||| ||||||||| ||||||| ||||||||||||| | ||||
seq2  ATTTCTGGGTC-TGTCAACCATTCAATGGAAAGGAAAGGCCCTGGTTCTT  49

seq1  GCGAAGATTCTATGCCCCAGTATAGGGGAATGCCAGGGCCAGGAAGCTGA  98
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGATTCTATGCCCCAGTATAGGGGAATGCCAGGGCCAGGAAGCTGA  99

seq1  AGT-GGGTGGGTTGGGG-AGAAGGGTTAGGGGAGAGGGGATGGGGGATTT  146
      ||| ||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGTGGGGTGGGTTGGGGAAGAAGGGTTAGGGGAGAGGGGATGGGGGATTT  149

seq1  ATGGAGAGG-AAACTAGG-AAAGAGGATAGCATTTG-AAATGTAAATAAA  193
      ||||||||| |||||||| ||||||||||||||||| |||||||||||||
seq2  ATGGAGAGGAAAACTAGGAAAAGAGGATAGCATTTGAAAATGTAAATAAA  199

seq1  GAAAAAATCTAATTTTAAAAAAAGAAAAATACCAAAAAAGAAAAAAGAAA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAATCTAATTTTAAAAAAAGAAAAATACCAAAAAAGAAAAAAGAAA  249

seq1  AAAACCATAACTTGCAAGCTACCTTTTCACTGAGAATTTTCATTCTTATT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCATAACTTGCAAGCTACCTTTTCACTGAGAATTTTCATTCTTATT  299

seq1  AATACTCCCACTAACAATGTCTTAAAAAAATTCTTGGTGTTCAGCTATCA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTCCCACTAACAATGTCTTAAAAAAATTCTTGGTGTTCAGCTATCA  349

seq1  ACCCATTTATATGAACTTTGAAAGTGCAATTAATAGAGTATTTAATGGAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATTTATATGAACTTTGAAAGTGCAATTAATAGAGTATTTAATGGAT  399

seq1  CCAGAGTCTATTTTATAACCCAGTAAGAAAGACATTGACATTCAACTCTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTCTATTTTATAACCCAGTAAGAAAGACATTGACATTCAACTCTT  449

seq1  ATAATTTTAAAACAATTTATTACTTATAGAGACACAATTTTTATTTGTTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTTAAAACAATTTATTACTTATAGAGACACAATTTTTATTTGTTT  499

seq1  TTGACAAGTGTTAATGTTTGGAAAAATCTAAACTTACTGTGTGGCTAGAG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAAGTGTTAATGTTTGGAAAAATCTAAACTTACTGTGTGGCTAGAG  549

seq1  ATGACAGGAATATAATATAGTCCCCTTCATTATTTTCAGTCTGCACAAGG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGGAATATAATATAGTCCCCTTCATTATTTTCAGTCTGCACAAGG  599

seq1  GATTAGAAAGTAGATACTATGAAAGGACAATTTTAAAGTCATACTAAAAC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGAAAGTAGATACTATGAAAGGACAATTTTAAAGTCATACTAAAAC  649

seq1  TCCTGTGCAAGTTTTCTAGAATAACCTCTGCCATAAAGTATAGTTCAAAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGCAAGTTTTCTAGAATAACCTCTGCCATAAAGTATAGTTCAAAT  699

seq1  TTGCATCTATTTAAAAACTCTAATTAGTCCTTCTTCTTTGCTAAATATTC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATCTATTTAAAAACTCTAATTAGTCCTTCTTCTTTGCTAAATATTC  749

seq1  ACTTTTTGTTTTACTATGAAGGAGGGTAAGTATGCAATAGTGTGTGAATG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTGTTTTACTATGAAGGAGGGTAAGTATGCAATAGTGTGTGAATG  799

seq1  GAGGTTCAAAGACAACTTGTGTGTTCAGTTCTCTCCTTCTGGCTTTATGT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTCAAAGACAACTTGTGTGTTCAGTTCTCTCCTTCTGGCTTTATGT  849

seq1  GAATTC  849
      ||||||
seq2  GAATTC  855


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