BAC Information

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BAC

Clone NameB6Ng01-178J14
Chromosome8 (Build37)
Map Location 51,889,399 - 52,041,609
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039919, EG667495, LOC100039954, LOC100039966
Downstream geneLOC667517, LOC623872
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178J14.bB6Ng01-178J14.g
ACCGA005543GA005544
length9991,151
definitionB6Ng01-178J14.b B6Ng01-178J14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,041,011 - 52,041,609)(51,889,399 - 51,890,550)
sequence
gaattcactctcttctcaaagttttatcatacacattgtagatctcctaa
aatgtcataagcattcacagtgatatttggtttaaacaggcattgtgagg
tctgatgttggatattattccaaaagttagtacatcagcaacttaatcac
taaattcatacatttatatttattgagaaggaggacctatgagaagtcat
tagagttagatgggtttattggagaattatccatggctacatcagagcca
tcagacacacacaagacagaatggcatcattggagctccaaacgtacata
taacattatgcctttcaaagtgttttgatgcatcaagaagaaccttatca
catgcagactttacactggtgccatcatattgggcttctcagacctatgg
gacagataagactctgttctttacaaaataccagatctctaatatgagga
aagcagagggaattagatagatataatataaacctagtgtatttaacatc
ttaattatctgttgcccgtctcttctctatgaaagcactttagttctgtc
attgctaattttgtatgcaccaactgttccttattttttttcaacgtatt
ctgattgatttttgggttgggtcacataattcaccccaatcacactcatt
ttccaggccttccctgtctgctctgtggcctcctcacaccaaaacacgta
ctttaaaaaaaggaatgaaaaatccactttgttttaactatctattcact
agagcatggttaaatttgtagtggcttgccccttgaaataaaatggtgtt
cttcctctcccacaccacctcaataagctgctctttggcatctctgtgac
atttaagagttctctttagtgacttcatgtctaggttgttagttttgaaa
ggcgatgtggagggtagggatagtcaagtagcctcccaaggccctctttc
ctaactatttgtcaacagtaattgatatcactgcaaaagtagctttctt

gaattcagggggaaaaccccacagtaaaataaacactatatataattatt
ggaataagtgatgttggctacaaaggatctcctaattttgtatgaatccc
atgaacagaactagaacaaactttaggaactgacattcttagattctatg
tttccctcccttaagtgtagcttccattcaatatatctgagatcagttgc
tgttttcagtttgtgaaggaatgggaaactgagctaatttagcacagaat
catcaaaacgagtggttctacttaaatgaaagtaagcacaagatggcttt
catttagaaacaaatgatgggattgcatatagaaacttaaaggatacaca
cagggtatacatcctatcctgtgagatgtccatttattaaattcacataa
gaaaattagttctcttactttaacactggactttgacttccttgtttgac
tagtgccgttccagctgtctgtaaatttctttcagttatatctaaatttg
tgagacatcaactctgaagataatattaaagttgagagccacagaaaagt
aatctggttttatttcttctggtgttttaaaataattactctataaagca
attaaattaatttggtagcacaaagaaattaatcatctgtgtatatagta
tgatttatttctctgggcacttacatatttaatacacacacacacacaca
cacacacacacacacacacatatatatatatatatatacatatatacaca
cacacatatatacacattttccctatgaaaagtttcaaaacatgaatgtc
atttagactacaattatagccactgtaattaatgatctctatttaatctt
cataggttattaacattgtatgcacaacattaattgggaatcagtgcatt
aaaaaagaactcctgaatatgggaagaagaatgcttttgggtaagttcaa
aaattttgaaggaaggacactgagggtagtcatgatcagtatgcattata
tgtgcatgtatgatatttttcaggaataaatatttaaataaaaatacatt
tgtttatttgagaacagctgtatgtaatcccacacctttgtattttatct
ggcttaggagtatttcattcatgcaaagccaatattgagttgattattct
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_52041011_52041609
seq2: B6Ng01-178J14.b_40_638 (reverse)

seq1  ATACGTTGAAAAAAAATAAGGAACAGTTGGTGCATACAAAATTAGCAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGTTGAAAAAAAATAAGGAACAGTTGGTGCATACAAAATTAGCAATG  50

seq1  ACAGAACTAAAGTGCTTTCATAGAGAAGAGACGGGCAACAGATAATTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACTAAAGTGCTTTCATAGAGAAGAGACGGGCAACAGATAATTAAG  100

seq1  ATGTTAAATACACTAGGTTTATATTATATCTATCTAATTCCCTCTGCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAAATACACTAGGTTTATATTATATCTATCTAATTCCCTCTGCTTT  150

seq1  CCTCATATTAGAGATCTGGTATTTTGTAAAGAACAGAGTCTTATCTGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATATTAGAGATCTGGTATTTTGTAAAGAACAGAGTCTTATCTGTCC  200

seq1  CATAGGTCTGAGAAGCCCAATATGATGGCACCAGTGTAAAGTCTGCATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGTCTGAGAAGCCCAATATGATGGCACCAGTGTAAAGTCTGCATGT  250

seq1  GATAAGGTTCTTCTTGATGCATCAAAACACTTTGAAAGGCATAATGTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGGTTCTTCTTGATGCATCAAAACACTTTGAAAGGCATAATGTTAT  300

seq1  ATGTACGTTTGGAGCTCCAATGATGCCATTCTGTCTTGTGTGTGTCTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACGTTTGGAGCTCCAATGATGCCATTCTGTCTTGTGTGTGTCTGAT  350

seq1  GGCTCTGATGTAGCCATGGATAATTCTCCAATAAACCCATCTAACTCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGATGTAGCCATGGATAATTCTCCAATAAACCCATCTAACTCTAA  400

seq1  TGACTTCTCATAGGTCCTCCTTCTCAATAAATATAAATGTATGAATTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCTCATAGGTCCTCCTTCTCAATAAATATAAATGTATGAATTTAG  450

seq1  TGATTAAGTTGCTGATGTACTAACTTTTGGAATAATATCCAACATCAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAAGTTGCTGATGTACTAACTTTTGGAATAATATCCAACATCAGAC  500

seq1  CTCACAATGCCTGTTTAAACCAAATATCACTGTGAATGCTTATGACATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAATGCCTGTTTAAACCAAATATCACTGTGAATGCTTATGACATTT  550

seq1  TAGGAGATCTACAATGTGTATGATAAAACTTTGAGAAGAGAGTGAATTC  599
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGATCTACAATGTGTATGATAAAACTTTGAGAAGAGAGTGAATTC  599


seq1: chr8_51889399_51890550
seq2: B6Ng01-178J14.g_65_1215

seq1  GAATTCAGGGGGAAAACCCCACAGTAAAATAAACACTATATATAATTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGGGAAAACCCCACAGTAAAATAAACACTATATATAATTATT  50

seq1  GGAATAAGTGATGTTGGCTACAAAGGATCTCCTAATTTTGTATGAATCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAAGTGATGTTGGCTACAAAGGATCTCCTAATTTTGTATGAATCCC  100

seq1  ATGAACAGAACTAGAACAAACTTTAGGAACTGACATTCTTAGATTCTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAGAACTAGAACAAACTTTAGGAACTGACATTCTTAGATTCTATG  150

seq1  TTTCCCTCCCTTAAGTGTAGCTTCCATTCAATATATCTGAGATCAGTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTCCCTTAAGTGTAGCTTCCATTCAATATATCTGAGATCAGTTGC  200

seq1  TGTTTTCAGTTTGTGAAGGAATGGGAAACTGAGCTAATTTAGCACAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCAGTTTGTGAAGGAATGGGAAACTGAGCTAATTTAGCACAGAAT  250

seq1  CATCAAAACGAGTGGTTCTACTTAAATGAAAGTAAGCACAAGATGGCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAACGAGTGGTTCTACTTAAATGAAAGTAAGCACAAGATGGCTTT  300

seq1  CATTTAGAAACAAATGATGGGATTGCATATAGAAACTTAAAGGATACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGAAACAAATGATGGGATTGCATATAGAAACTTAAAGGATACACA  350

seq1  CAGGGTATACATCCTATCCTGTGAGATGTCCATTTATTAAATTCACATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTATACATCCTATCCTGTGAGATGTCCATTTATTAAATTCACATAA  400

seq1  GAAAATTAGTTCTCTTACTTTAACACTGGACTTTGACTTCCTTGTTTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTAGTTCTCTTACTTTAACACTGGACTTTGACTTCCTTGTTTGAC  450

seq1  TAGTGCCGTTCCAGCTGTCTGTAAATTTCTTTCAGTTATATCTAAATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCCGTTCCAGCTGTCTGTAAATTTCTTTCAGTTATATCTAAATTTG  500

seq1  TGAGACATCAACTCTGAAGATAATATTAAAGTTGAGAGCCACAGAAAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACATCAACTCTGAAGATAATATTAAAGTTGAGAGCCACAGAAAAGT  550

seq1  AATCTGGTTTTATTTCTTCTGGTGTTTTAAAATAATTACTCTATAAAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGGTTTTATTTCTTCTGGTGTTTTAAAATAATTACTCTATAAAGCA  600

seq1  ATTAAATTAATTTGGTAGCACAAAGAAATTAATCATCTGTGTATATAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATTAATTTGGTAGCACAAAGAAATTAATCATCTGTGTATATAGTA  650

seq1  TGATTTATTTCTCTGGGCACTTACATATTTAATACACACACACACACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTATTTCTCTGGGCACTTACATATTTAATACACACACACACACACA  700

seq1  CACACACACACACACACACATATATATATATATATATACATATATACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACATATATATATATATATATACATATATACACA  750

seq1  CACACATATATACACATTTTCCCTATGAAAAGTTTCAAAACATGAATGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATATATACACATTTTCCCTATGAAAAGTTTCAAAACATGAATGTC  800

seq1  ATTTAGACTACAATTATAGCCACTGTAATTAATGATCTCTATTTAATCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGACTACAATTATAGCCACTGTAATTAATGATCTCTATTTAATCTT  850

seq1  CATA-GTTATTAACATTGTATGCACAACATTAATT-GGAATCAGTGCATT  898
      |||| |||||||||||||||||||||||||||||| ||||||||||||||
seq2  CATAGGTTATTAACATTGTATGCACAACATTAATTGGGAATCAGTGCATT  900

seq1  AAAAAAGAACTCCTGAATATGGGAAGAAG-ATGC-TTTGGGTAAGTTCAA  946
      ||||||||||||||||||||||||||||| |||| |||||||||||||||
seq2  AAAAAAGAACTCCTGAATATGGGAAGAAGAATGCTTTTGGGTAAGTTCAA  950

seq1  AAATTTTGAAGGAAGGACACTGAGGGTAGTCATGATCAGTATGCATTATA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTGAAGGAAGGACACTGAGGGTAGTCATGATCAGTATGCATTATA  1000

seq1  TGTGCATGTATGATA-TTTTCAGGAATAAATATTTAAATAAAAATTACAT  1045
      ||||||||||||||| |||||||||||||||||||||||||||| |||||
seq2  TGTGCATGTATGATATTTTTCAGGAATAAATATTTAAATAAAAA-TACAT  1049

seq1  TTGTTTTATTTGAG-ACAGCTGTATTGGTAATCCCACAACCCTTTGTATT  1094
      ||| |||||||||| ||||||||||  |||||||||||  ||||||||||
seq2  TTG-TTTATTTGAGAACAGCTGTAT--GTAATCCCACA--CCTTTGTATT  1094

seq1  TTATCTGGCTTAGGGAGTA-TTCTATCATGCAAAAGGCAATATGAGGTTG  1143
      |||||||||||| |||||| |||  |||||| |||| ||||||   ||||
seq2  TTATCTGGCTTA-GGAGTATTTCATTCATGC-AAAGCCAATATTGAGTTG  1142

seq1  TTTATTCTT  1152
       ||||||||
seq2  ATTATTCTT  1151


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