BAC Information

Click to search

BAC

Clone NameB6Ng01-178J24
Chromosome8 (Build37)
Map Location 38,426,192 - 38,427,123
singlet/doubletsinglet
Overlap genenone
Upstream geneEG544878, 6430573F11Rik, Dlc1, LOC100042892, A730069N07Rik, AI429214, LOC666877, LOC100041616, 1700016D18Rik, LOC641121
Downstream geneLOC621149, Sgcz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178J24.bB6Ng01-178J24.g
ACCGA005563GA005564
length931626
definitionB6Ng01-178J24.b B6Ng01-178J24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgagaatgcttttcaaagaggatgtgtttttcagaggccttggt
tttcatagtctatcctaaagaaacaaagatctagtaggcaaaacacttat
taggtctccttaatcaagaaattttctgaatttcagttgctcaatttata
atatcatgctctttaattctgtgtaaaaatttgctcatatgtggttagat
taccaatttaaggttattaacctagcatcttatcccttttaaattttgga
aagtgttccaaatttaatatgcatagattgtgatatttaaatgataaaaa
taaatctccttactttcctagaataatttatgctagaatatatttcctag
aataatatgtaacctcatttttttaagtgaatttttctttaacaattaca
caagatgtagttccttaggaatccattaacagatctcaagatcaatgccc
tttcaagttcaactcttttcatttctaccctttaaaaaaaatcatatcca
tcttactttgtttatatttcatactaaattcatgcattccccagaagtca
ttgaccaatgatgtgtagatatcatactggacctgtcaccagctatcatc
tgttgaagtagtcaagtggctaaaacctcccaatttttttctttatccaa
actgtgattcaaggataaagtcaagaggtcaacacaaatgatgcctgaga
atttttacagattctgaaaaataaaatgaagacagttgcatcatagggaa
actcctcaattaaatcccaactatgttatttgataacaaaggaagacagt
tagaatgtgcacatctggcaggtaagtggcagagacagagaaatagagaa
aaagttccagacaagatagaaagatagatagatagatagatagatagata
gatagatagatagatagatagatagatagat

gaattcttagagcctaatgaagaaacccatctcagtgggatttcctaact
tctcttatggtaaaccctatctggataagacggtcctttctgtcctagta
aacatctagcagactagccctgctgttggctccgtcttttataatgcaaa
ttagtactgaataggtaacttccttgttgaaatttttactgaataccaag
tagtcagctgcaaggtctttctagggtgttggaacactggtgaggactga
ctgtacgaatatgaaaggcactttattatgataacgctgaaggagagtaa
gtggattttcctcttcattcttggatgacaggtagggaaaagagaggagg
ggtgacaacctgctccttagtacagggccaattggctttttagggtgaga
ggctgtgaaggacttgcccttctaacagtacggtctccaacctctccccc
ccccccattaattaagcttaataaggccacacttaactgaggtgatcaaa
tgattttctcatccttagatgagtgggcttttaccatggctggggggata
ttgacccaattcctcctgtgggtgctgtcacgacccacacttgtagctct
tggtatcttttggggaggggagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_38426192_38427123
seq2: B6Ng01-178J24.b_42_972

seq1  GAATTCTGAGAATGCTTTTCAAAGAGGATGTGTTTTTCAGAGGCCTTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGAATGCTTTTCAAAGAGGATGTGTTTTTCAGAGGCCTTGGT  50

seq1  TTTCATAGTCTATCCTAAAGAAACAAAGATCTAGTAGGCAAAACACTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAGTCTATCCTAAAGAAACAAAGATCTAGTAGGCAAAACACTTAT  100

seq1  TAGGTCTCCTTAATCAAGAAATTTTCTGAATTTCAGTTGCTCAATTTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCTCCTTAATCAAGAAATTTTCTGAATTTCAGTTGCTCAATTTATA  150

seq1  ATATCATGCTCTTTAATTCTGTGTAAAAATTTGCTCATATGTGGTTAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATGCTCTTTAATTCTGTGTAAAAATTTGCTCATATGTGGTTAGAT  200

seq1  TACCAATTTAAGGTTATTAACCTAGCATCTTATCCCTTTTAAATTTTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAATTTAAGGTTATTAACCTAGCATCTTATCCCTTTTAAATTTTGGA  250

seq1  AAGTGTTCCAAATTTAATATGCATAGATTGTGATATTTAAATGATAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTCCAAATTTAATATGCATAGATTGTGATATTTAAATGATAAAAA  300

seq1  TAAATCTCCTTACTTTCCTAGAATAATTTATGCTAGAATATATTTCCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTCCTTACTTTCCTAGAATAATTTATGCTAGAATATATTTCCTAG  350

seq1  AATAATATGTAACCTCATTTTTTTAAGTGAATTTTTCTTTAACAATTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATATGTAACCTCATTTTTTTAAGTGAATTTTTCTTTAACAATTACA  400

seq1  CAAGATGTAGTTCCTTAGGAATCCATTAACAGATCTCAAGATCAATGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGTAGTTCCTTAGGAATCCATTAACAGATCTCAAGATCAATGCCC  450

seq1  TTTCAAGTTCAACTCTTTTCATTTCTACCCTTTAAAAAAAATCATATCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGTTCAACTCTTTTCATTTCTACCCTTTAAAAAAAATCATATCCA  500

seq1  TCTTACTTTGTTTATATTTCATACTAAATTCATGCATTCCCCAGAAGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTTTGTTTATATTTCATACTAAATTCATGCATTCCCCAGAAGTCA  550

seq1  TTGACCAATGATGTGTAGATATCATACTGGACCTGTCACCAGCTATCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCAATGATGTGTAGATATCATACTGGACCTGTCACCAGCTATCATC  600

seq1  TGTTGAAGTAGTCAAGTGGCTAAAACCTCCCAATTTTTTTCTTTATCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAAGTAGTCAAGTGGCTAAAACCTCCCAATTTTTTTCTTTATCCAA  650

seq1  ACTGTGATTCAAGGATAAAGTCAAGAGGTCAACACAAATGATGCCTGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGATTCAAGGATAAAGTCAAGAGGTCAACACAAATGATGCCTGAGA  700

seq1  ATTTTTACAGATTCTGAAAAATAAAATGAAGACAGTTGCATCATAGGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTACAGATTCTGAAAAATAAAATGAAGACAGTTGCATCATAGGGAA  750

seq1  ACTCCTCAATTAAATCCCAACTATGTTATTTGATAACAAAGGAAGACAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTCAATTAAATCCCAACTATGTTATTTGATAACAAAGGAAGACAGT  800

seq1  TAGAATGTGCACATCTGGCAGGTAAGTGGCAGAGACAGAGAAATAGAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGTGCACATCTGGCAGGTAAGTGGCAGAGACAGAGAAATAGAGAA  850

seq1  AAAGTTCCAGACAAAGATAGAAAGATAGATAGATAGATAGATAGATAGAT  900
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCCAGAC-AAGATAGAAAGATAGATAGATAGATAGATAGATAGAT  899

seq1  AGATAGATAGATAGATAGATAGATAGATAGAT  932
      ||||||||||||||||||||||||||||||||
seq2  AGATAGATAGATAGATAGATAGATAGATAGAT  931


| Home | SequenceCutter | Blast | Download |