BAC Information

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BAC

Clone NameB6Ng01-178M12
Chromosome8 (Build37)
Map Location 112,934,519 - 113,106,100
singlet/doubletdoublet
Overlap geneHydin, LOC672398
Upstream geneLOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546
Downstream geneVac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59, Znrf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178M12.bB6Ng01-178M12.g
ACCGA005672GA005673
length1,124975
definitionB6Ng01-178M12.b B6Ng01-178M12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,934,519 - 112,935,642)(113,105,131 - 113,106,100)
sequence
gaattcaccatctctcccaacagtggcaccatccgtgcccagggctttac
tgccatcaaggtaaagtgtgcagctgtcagcacacacagccaaacaccca
ccacctttcagatagccactgatatgtcacctaggggtttctgtccaagg
acagtgatagggaatgccgtggggaaaccacacgcaaagctgggccatgt
agggactaagcctctgagatcacagaaccagatgcaaataggttgggcaa
agaaattcacactgctcaggttaccggagtcgctaaggttggagacagtg
ttcagccaattctagcaagacagtcctcaattagctgagtagagagacaa
atttccatggaaagaggaacaaagctatccagtggctcccactccccagt
cctcttggggtcctgacatgagacttgcttctggcctggatatggcccca
ctcatcatcacgatctcagccctagcctctcctcagaggtagtctgacca
attgttggaaccagataagatctctttccaggcaaaaagagccttctctt
tctccagcttgagattccaggagctgatggggagagggactccagtatct
tggggactattgtttcaataatctaatggccaaaaggagatcccaagtgt
ctttagaataaccttgttctcaccagaccagacaaaccccagttaaatgg
atatccactgagtctaacatgaatgcagaaccagtatcttcataggagcc
gtggcttctagttatttctagtacaatccctgttccatacagacaacaca
cccactgactctaatagaggagtggaagaacccggagtctggctttcaga
ttcaggtcctccacagccatacacatccggccttatgccaagctgacagc
taggccaatcagttcgcagtataaatctggatcctggcaaatgtgggtgc
catgtgcctttccactagagctttggatttaagttccacgggaagaagag
atacgaaggttgcccagcaccctactttggtctgaaatcagaccagtgag
gtggccattagtggtgcctcatgtgccccagcaggcttactttcatagta
acaagaaagcttcagtcttctctc
gaattcaaacgatacaactcagactcactggacattcttcccaccgatgc
ccacactggtgaactcaatcacacgggtattaggttcgagaggcccagcg
cctggtcctcggagctctgggttgcgccgatgaccactgatgtagtccga
ctccttcaggtcaaagtggcagaacggcaggacgcttcgcccttttgtta
tcaaaataggaccttgttctccaagtgggaggttgggaattctgaaatga
gagggttatttttaattttgatttttctatcccgttgtccctttcttagc
tggttggaaataaatattctgtttaccagaatgtgagttccatgtgagca
gagggtgggtttgtcttggtcagtcacaccatattttgccttgactggca
cattctatatagtagcataataggcactaatgaatttactgttaaatgga
caagtgggctgactctgaggaacctagatgtaagtaccctctgtgtatgt
ggctctaagtttttccctcctatcagtggttatgtaaacaacgtgcttgc
cctttgggttcactcctaggcatccaatagattatagagaaggacctgga
aaccctaaccaagttattctaagacccttggagaaggtgatgcatatgaa
cagactcagccttggggctgagctgaggtggctctagtgtggcagaggtc
tctctggtataagatcaggggttcaggggaactctggcacttcaggtagg
cctctgccatcctagggcaagacttagagaagcttctacaaggcaggtgt
tctttctggaaaatttccttggaagaaggtgccatatctgggacgctctc
tgatacatgttatttgtttaccttttttttctctctctctcactggacac
cagaccagacggggtctgccaacccaatatttccttcccgtctttgttta
ttggaggttattgtgggccaggcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_112934519_112935642
seq2: B6Ng01-178M12.b_46_1169

seq1  GAATTCACCATCTCTCCCAACAGTGGCACCATCCGTGCCCAGGGCTTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATCTCTCCCAACAGTGGCACCATCCGTGCCCAGGGCTTTAC  50

seq1  TGCCATCAAGGTAAAGTGTGCAGCTGTCAGCACACACAGCCAAACACCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCAAGGTAAAGTGTGCAGCTGTCAGCACACACAGCCAAACACCCA  100

seq1  CCACCTTTCAGATAGCCACTGATATGTCACCTAGGGGTTTCTGTCCAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTTTCAGATAGCCACTGATATGTCACCTAGGGGTTTCTGTCCAAGG  150

seq1  ACAGTGATAGGGAATGCCGTGGGGAAACCACACGCAAAGCTGGGCCATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGATAGGGAATGCCGTGGGGAAACCACACGCAAAGCTGGGCCATGT  200

seq1  AGGGACTAAGCCTCTGAGATCACAGAACCAGATGCAAATAGGTTGGGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTAAGCCTCTGAGATCACAGAACCAGATGCAAATAGGTTGGGCAA  250

seq1  AGAAATTCACACTGCTCAGGTTACCGGAGTCGCTAAGGTTGGAGACAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTCACACTGCTCAGGTTACCGGAGTCGCTAAGGTTGGAGACAGTG  300

seq1  TTCAGCCAATTCTAGCAAGACAGTCCTCAATTAGCTGAGTAGAGAGACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCCAATTCTAGCAAGACAGTCCTCAATTAGCTGAGTAGAGAGACAA  350

seq1  ATTTCCATGGAAAGAGGAACAAAGCTATCCAGTGGCTCCCACTCCCCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCATGGAAAGAGGAACAAAGCTATCCAGTGGCTCCCACTCCCCAGT  400

seq1  CCTCTTGGGGTCCTGACATGAGACTTGCTTCTGGCCTGGATATGGCCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGGGGTCCTGACATGAGACTTGCTTCTGGCCTGGATATGGCCCCA  450

seq1  CTCATCATCACGATCTCAGCCCTAGCCTCTCCTCAGAGGTAGTCTGACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCATCACGATCTCAGCCCTAGCCTCTCCTCAGAGGTAGTCTGACCA  500

seq1  ATTGTTGGAACCAGATAAGATCTCTTTCCAGGCAAAAAGAGCCTTCTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGGAACCAGATAAGATCTCTTTCCAGGCAAAAAGAGCCTTCTCTT  550

seq1  TCTCCAGCTTGAGATTCCAGGAGCTGATGGGGAGAGGGACTCCAGTATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGCTTGAGATTCCAGGAGCTGATGGGGAGAGGGACTCCAGTATCT  600

seq1  TGGGGACTATTGTTTCAATAATCTAATGGCCAAAAGGAGATCCCAAGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACTATTGTTTCAATAATCTAATGGCCAAAAGGAGATCCCAAGTGT  650

seq1  CTTTAGAATAACCTTGTTCTCACCAGACCAGACAAACCCCAGTTAAATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAATAACCTTGTTCTCACCAGACCAGACAAACCCCAGTTAAATGG  700

seq1  ATATCCACTGAGTCTAACATGAATGCAGAACCAGTATCTTCATAGGAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCACTGAGTCTAACATGAATGCAGAACCAGTATCTTCATAGGAGCC  750

seq1  GTGGCTTCTAGTTATTTCTAGTACAATCCCTGTTCCATACAGACAACACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTCTAGTTATTTCTAGTACAATCCCTGTTCCATACAGACAACACA  800

seq1  CCCACTGACTCTAATAGAGGAGTGGAAGAACCCGGAGTCTGGC-TTCAGA  849
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCCACTGACTCTAATAGAGGAGTGGAAGAACCCGGAGTCTGGCTTTCAGA  850

seq1  TTCAGGTCCTCCACAGCCATACACATCCGGCCTTATGCCAAGCTGACAGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTCCTCCACAGCCATACACATCCGGCCTTATGCCAAGCTGACAGC  900

seq1  TAGGCCAATCAGGTTCGCAGTATAAATCTGGATCCTGGCAAATGTGGGTG  949
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCAATCA-GTTCGCAGTATAAATCTGGATCCTGGCAAATGTGGGTG  949

seq1  CCATGTGCCTTTCCACTAGAGCTTTGGATTTAAG-TCCACGGGAAG-AGA  997
      |||||||||||||||||||||||||||||||||| ||||||||||| |||
seq2  CCATGTGCCTTTCCACTAGAGCTTTGGATTTAAGTTCCACGGGAAGAAGA  999

seq1  GATACGAAGGGTGCCCAGCACCCTAC-TTGGTCTGAAATCAGAACAGTGA  1046
      |||||||||| ||||||||||||||| |||||||||||||||| ||||||
seq2  GATACGAAGGTTGCCCAGCACCCTACTTTGGTCTGAAATCAGACCAGTGA  1049

seq1  GGTGGCCA-TAGTGGTGCCTCATGGTGCCCCCAGCAGGGTTAC-TTCATA  1094
      |||||||| |||||||||||||| ||| |||||||||| |||| ||||||
seq2  GGTGGCCATTAGTGGTGCCTCAT-GTG-CCCCAGCAGGCTTACTTTCATA  1097

seq1  GTTAACCAAGAAAGGCTTCAGTCTTCTCTC  1124
      ||  | ||||||| ||||||||||||||||
seq2  GT--AACAAGAAA-GCTTCAGTCTTCTCTC  1124

seq1: chr8_113105131_113106100
seq2: B6Ng01-178M12.g_65_1039 (reverse)

seq1  ATGCCTGGCCCACAATAAACT-CAATAAACAAAGACGGGAAGG-AATATT  48
      |||||||||||||||||| || ||||||||||||||||||||| ||||||
seq2  ATGCCTGGCCCACAATAACCTCCAATAAACAAAGACGGGAAGGAAATATT  50

seq1  GGGTTGGCAGACCCGGTCTGGTCTGGTGTCCAGTGAGAGAGAGAGAAAAA  98
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGGTTGGCAGACCCCGTCTGGTCTGGTGTCCAGTGAGAGAGAGAGAAAAA  100

seq1  AAA-GTAAACAAAT-ACATGTATCAGAGAGCGTCCCAGATATGGCACCTT  146
      ||| |||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAAGGTAAACAAATAACATGTATCAGAGAGCGTCCCAGATATGGCACCTT  150

seq1  CTTCC-AGGAAATTTTCCAGAAAGAACACCTGCCTTGTAGAAGCTTCTCT  195
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAGGAAATTTTCCAGAAAGAACACCTGCCTTGTAGAAGCTTCTCT  200

seq1  AAGTCTTGCCCTAGGATGGCAGAGGCCTACCTGAAGTGCCAGAGTTCCCC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTGCCCTAGGATGGCAGAGGCCTACCTGAAGTGCCAGAGTTCCCC  250

seq1  TGAACCCCTGATCTTATACCAGAGAGACCTCTGCCACACTAGAGCCACCT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCCCTGATCTTATACCAGAGAGACCTCTGCCACACTAGAGCCACCT  300

seq1  CAGCTCAGCCCCAAGGCTGAGTCTGTTCATATGCATCACCTTCTCCAAGG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCAGCCCCAAGGCTGAGTCTGTTCATATGCATCACCTTCTCCAAGG  350

seq1  GTCTTAGAATAACTTGGTTAGGGTTTCCAGGTCCTTCTCTATAATCTATT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGAATAACTTGGTTAGGGTTTCCAGGTCCTTCTCTATAATCTATT  400

seq1  GGATGCCTAGGAGTGAACCCAAAGGGCAAGCACGTTGTTTACATAACCAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCCTAGGAGTGAACCCAAAGGGCAAGCACGTTGTTTACATAACCAC  450

seq1  TGATAGGAGGGAAAAACTTAGAGCCACATACACAGAGGGTACTTACATCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGGAGGGAAAAACTTAGAGCCACATACACAGAGGGTACTTACATCT  500

seq1  AGGTTCCTCAGAGTCAGCCCACTTGTCCATTTAACAGTAAATTCATTAGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCTCAGAGTCAGCCCACTTGTCCATTTAACAGTAAATTCATTAGT  550

seq1  GCCTATTATGCTACTATATAGAATGTGCCAGTCAAGGCAAAATATGGTGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATTATGCTACTATATAGAATGTGCCAGTCAAGGCAAAATATGGTGT  600

seq1  GACTGACCAAGACAAACCCACCCTCTGCTCACATGGAACTCACATTCTGG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGACCAAGACAAACCCACCCTCTGCTCACATGGAACTCACATTCTGG  650

seq1  TAAACAGAATATTTATTTCCAACCAGCTAAGAAAGGGACAACGGGATAGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGAATATTTATTTCCAACCAGCTAAGAAAGGGACAACGGGATAGA  700

seq1  AAAATCAAAATTAAAAATAACCCTCTCATTTCAGAATTCCCAACCTCCCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAAAATTAAAAATAACCCTCTCATTTCAGAATTCCCAACCTCCCA  750

seq1  CTTGGAGAACAAGGTCCTATTTTGATAACAAAAGGGCGAAGCGTCCTGCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGAACAAGGTCCTATTTTGATAACAAAAGGGCGAAGCGTCCTGCC  800

seq1  GTTCTGCCACTTTGACCTGAAGGAGTCGGACTACATCAGTGGTCATCGGC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGCCACTTTGACCTGAAGGAGTCGGACTACATCAGTGGTCATCGGC  850

seq1  GCAACCCAGAGCTCCGAGGACCAGGCGCTGGGCCTCTCGAACCTAATACC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCCAGAGCTCCGAGGACCAGGCGCTGGGCCTCTCGAACCTAATACC  900

seq1  CGTGTGATTGAGTTCACCAGTGTGGGCATCGGTGGGAAGAATGTCCAGTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGATTGAGTTCACCAGTGTGGGCATCGGTGGGAAGAATGTCCAGTG  950

seq1  AGTCTGAGTTGTATCGTTTGAATTC  970
      |||||||||||||||||||||||||
seq2  AGTCTGAGTTGTATCGTTTGAATTC  975