BAC Information

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BAC

Clone NameB6Ng01-178N16
Chromosome8 (Build37)
Map Location 124,443,108 - 124,619,401
singlet/doubletdoublet
Overlap geneCar5a, Banp
Upstream geneLOC100042333, Foxf1a, Mthfsd, Foxc2, Foxl1, 1700018B08Rik, Fbxo31, Map1lc3b, Zcchc14, Jph3, Klhdc4, Slc7a5, BC048644
Downstream geneGm22, Zfpm1, Trhr2, 5830416A07Rik, Il17c, Cyba, Mvd, Snai3, Rnf166, 2310061F22Rik, Cdt1, Aprt, Galns, Trappc2l, Pabpnl1, Cbfa2t3h, C230057M02Rik, A530010L16Rik, BC021611, LOC100043225, Cdh15, Ankrd11, Spg7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178N16.bB6Ng01-178N16.g
ACCGA005727GA005728
length882619
definitionB6Ng01-178N16.b B6Ng01-178N16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,618,529 - 124,619,401)(124,443,108 - 124,443,725)
sequence
gaattccatctagtgtatttttttccgtacatttttcatctccaaatatc
caaggttttctgcatgttttatttctctccacacatgatctcagcctcct
cttctttgccaaacacacagagtgtgtttctagggctgttttagcatctc
tgtctgtgaagtcctgtcacttgatggagttctaatcggttggtctccca
ttgtgagtctttgctttctgcacgtctggttatttttgatggaatgccag
ctactgggatgtctatcatggctctgtggcttctgccatcctcctgcaca
gctctgggccttatcctgctgggctgtcacttggcatcaggtccttctga
ggcttgtgtatggaggggccagagcagtcttgggctaaccctaatttgct
atcaatactgagaccatcttctctgaagattcagcctcacacctgtgtgc
tctaaggtctctccaccttgggtggtgggagcgagccacctcagccccct
tggactgccctttcccagccatcagaaacttcatcacacagcgatcagtc
cgcaacacattcagttgctctatagatccttggagttggctgttcttcct
ctccagggctctgaattagaattctaattcagcctggaacactccagttt
ctaggggctctgtcctctagggccttagtccctctatcccattgcccact
gtgcaggaatggcgtagccatctaataagcctttctcttctttggctgcc
caaccttgtgatgtttattgttcaacagtggttgtgccctgtgttcttta
gtaggaggagaggtaccatattctacttctccattccagtcaccaccctc
tctccaatgggtcagttgaggttcccagaaga
gaattcctgatcctcctgcctcctcctcctcctcctgagtgccaaaatta
ctgacatgagcaaggatgttctgtgcgtcctgtgttatggctggctgaga
agcatccaccatgtgactaggctgtgtttcatctgcatccacccatgttg
gccacttggcctgcttctcccttgtggctatcttaaaagtacttccagaa
tgggagggggtgggcgccggtggcttcgggcaactttcagttctcagggt
gagtacacatacatgagattgctgggccaggtggactctcttgtttgttt
ttgtttttcttcttttagttttaaggacccatagtgtgttttcaacagtt
gttgcaccaataaatcttacagttttaaaacagcagcctgccactgggta
cactggtgcacactttaaatctcagcccttgggaggtagaggcaggtgga
tctcttgagttaaggccagcctggtccacagagaaaccctgtctcaaaca
aaaacaaacaaacccatctgccttgtctctctcgagcagcctgacatata
aagtgtacatgctatggggcccttccccccaaccctcatgttctttccct
gtcactgggagcaggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_124618529_124619401
seq2: B6Ng01-178N16.b_49_929 (reverse)

seq1  TCTTCTGGGTACCTC-ACTGACCC-TTGGAGAGA-GGTGGTGACTTGGAT  47
      ||||||||| ||||| |||||||| ||||||||| |||||||||| | ||
seq2  TCTTCTGGGAACCTCAACTGACCCATTGGAGAGAGGGTGGTGACTGGAAT  50

seq1  GGAG-AGTAG-ATATGGTACCTCTCCTCCTACTAAAGAACACAGGGCACA  95
      |||| ||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGTAGAATATGGTACCTCTCCTCCTACTAAAGAACACAGGGCACA  100

seq1  ACCACTGTTGAACAATAAACATCACAAGGTT-GGCAGCC-AAGAAGAGAA  143
      ||||||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  ACCACTGTTGAACAATAAACATCACAAGGTTGGGCAGCCAAAGAAGAGAA  150

seq1  AGGCTTATTAGATGGCTACGCCATTCCTGCACAGTGGGCAATGGGATAGA  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTATTAGATGGCTACGCCATTCCTGCACAGTGGGCAATGGGATAGA  200

seq1  -GGACTAAGGCCCTAGAGGACAGAGCCCCTAGAAACTGGAGTGTTCCAGG  242
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTAAGGCCCTAGAGGACAGAGCCCCTAGAAACTGGAGTGTTCCAGG  250

seq1  CTGAATTAGAATTCTAATTCAGAGCCCTGGAGAGGAAGAACAGCCAACTC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTAGAATTCTAATTCAGAGCCCTGGAGAGGAAGAACAGCCAACTC  300

seq1  CAAGGATCTATAGAGCAACTGAATGTGTTGCGGACTGATCGCTGTGTGAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATCTATAGAGCAACTGAATGTGTTGCGGACTGATCGCTGTGTGAT  350

seq1  GAAGTTTCTGATGGCTGGGAAAGGGCAGTCCAAGGGGGCTGAGGTGGCTC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTCTGATGGCTGGGAAAGGGCAGTCCAAGGGGGCTGAGGTGGCTC  400

seq1  GCTCCCACCACCCAAGGTGGAGAGACCTTAGAGCACACAGGTGTGAGGCT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCACCACCCAAGGTGGAGAGACCTTAGAGCACACAGGTGTGAGGCT  450

seq1  GAATCTTCAGAGAAGATGGTCTCAGTATTGATAGCAAATTAGGGTTAGCC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTCAGAGAAGATGGTCTCAGTATTGATAGCAAATTAGGGTTAGCC  500

seq1  CAAGACTGCTCTGGCCCCTCCATACACAAGCCTCAGAAGGACCTGATGCC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACTGCTCTGGCCCCTCCATACACAAGCCTCAGAAGGACCTGATGCC  550

seq1  AAGTGACAGCCCAGCAGGATAAGGCCCAGAGCTGTGCAGGAGGATGGCAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACAGCCCAGCAGGATAAGGCCCAGAGCTGTGCAGGAGGATGGCAG  600

seq1  AAGCCACAGAGCCATGATAGACATCCCAGTAGCTGGCATTCCATCAAAAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACAGAGCCATGATAGACATCCCAGTAGCTGGCATTCCATCAAAAA  650

seq1  TAACCAGACGTGCAGAAAGCAAAGACTCACAATGGGAGACCAACCGATTA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGACGTGCAGAAAGCAAAGACTCACAATGGGAGACCAACCGATTA  700

seq1  GAACTCCATCAAGTGACAGGACTTCACAGACAGAGATGCTAAAACAGCCC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCCATCAAGTGACAGGACTTCACAGACAGAGATGCTAAAACAGCCC  750

seq1  TAGAAACACACTCTGTGTGTTTGGCAAAGAAGAGGAGGCTGAGATCATGT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACACACTCTGTGTGTTTGGCAAAGAAGAGGAGGCTGAGATCATGT  800

seq1  GTGGAGAGAAATAAAACATGCAGAAAACCTTGGATATTTGGAGATGAAAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGAGAAATAAAACATGCAGAAAACCTTGGATATTTGGAGATGAAAA  850

seq1  ATGTACGGAAAAAAATACACTAGATGGAATT  873
      |||||||||||||||||||||||||||||||
seq2  ATGTACGGAAAAAAATACACTAGATGGAATT  881

seq1: chr8_124443108_124443725
seq2: B6Ng01-178N16.g_67_685

seq1  GAATTCCTGATCCTCCTGCCTCCTCCTCCTCCTCCTGAGTGCCAAAATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATCCTCCTGCCTCCTCCTCCTCCTCCTGAGTGCCAAAATTA  50

seq1  CTGACATGAGCAAGGATGTTCTGTGCGTCCTGTGTTATGGCTGGCTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATGAGCAAGGATGTTCTGTGCGTCCTGTGTTATGGCTGGCTGAGA  100

seq1  AGCATCCACCATGTGACTAGGCTGTGTTTCATCTGCATCCACCCATGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCACCATGTGACTAGGCTGTGTTTCATCTGCATCCACCCATGTTG  150

seq1  GCCACTTGGCCTGCTTCTCCCTTGTGGCTATCTTAAAAGTACTTCCAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTTGGCCTGCTTCTCCCTTGTGGCTATCTTAAAAGTACTTCCAGAA  200

seq1  TGGGAGGGGGTGGGCGCCGGTGGCTTCGGGCAACTTTCAGTTCTCAGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGGGGTGGGCGCCGGTGGCTTCGGGCAACTTTCAGTTCTCAGGGT  250

seq1  GAGTACACATACATGAGATTGCTGGGCCAGGTGGACTCTCTTGTTTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACACATACATGAGATTGCTGGGCCAGGTGGACTCTCTTGTTTGTTT  300

seq1  TTGTTTTTCTTCTTTTAGTTTTAAGGACCCATAGTGTGTTTTCAACAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTCTTCTTTTAGTTTTAAGGACCCATAGTGTGTTTTCAACAGTT  350

seq1  GTTGCACCAATAAATCTTACAGTTTTAAAACAGCAGCCTGCCACTGGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCACCAATAAATCTTACAGTTTTAAAACAGCAGCCTGCCACTGGGTA  400

seq1  CACTGGTGCACACTTTAAATCTCAGCCCTTGGGAGGTAGAGGCAGGTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGTGCACACTTTAAATCTCAGCCCTTGGGAGGTAGAGGCAGGTGGA  450

seq1  TCTCTTGAGTTAAGGCCAGCCTGGTCCACAGAGAAACCCTGTCTCAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGAGTTAAGGCCAGCCTGGTCCACAGAGAAACCCTGTCTCAAACA  500

seq1  AAAACAAACAAACCCATCTGCCTTGTCTCTCTCGAGCAGCCTGACATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAACAAACCCATCTGCCTTGTCTCTCTCGAGCAGCCTGACATATA  550

seq1  AAGTGTACATGCTATGGGGCCCTTCCCCCCAACCCTCATGTTC-TTCCCT  599
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAGTGTACATGCTATGGGGCCCTTCCCCCCAACCCTCATGTTCTTTCCCT  600

seq1  GTCACTGGGAGCAGGTGGG  618
      |||||||||||||||||||
seq2  GTCACTGGGAGCAGGTGGG  619