BAC Information

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BAC

Clone NameB6Ng01-179A12
Chromosome8 (Build37)
Map Location 65,276,405 - 65,426,448
singlet/doubletdoublet
Overlap genenone
Upstream genePalld, BC013672, Anxa10, LOC100040775, LOC384830, LOC100040804, LOC665267
Downstream geneSpock3, LOC384831, EG244495
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179A12.bB6Ng01-179A12.g
ACCGA005861GA005862
length1,096571
definitionB6Ng01-179A12.b B6Ng01-179A12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,425,374 - 65,426,448)(65,276,405 - 65,276,981)
sequence
gaattcacctgtaattaaagtcaagatgagggaatggttaattcaggaat
tctgctacgttactgtgaaagtcactcttcctaagctactttagatggtt
acttacccacatatcaccctcaagattaccaatcagaggcttagaaaacc
atgcagctgcttggcacagaagggaagtggctaattgtagtattctctcc
ggaggtgtgaatgtttgctgaccaaactagagtctatcatgttattaaaa
aggtgttggaagatggggagtaatggacattaagggacttctgaaaagtt
agatattaaccaaaatagatggcttggtgtaaagtaaaatgtgctgatgt
cacattttattttggttatttcaatatgaccaatatttggttgatagtat
atgatcatgccagaaaacaatggtttagccaatttaaccttttagaattg
tgtcttattccaaatctatctgtgagtttacatttaaaaaaagatgaagt
taaacaagatcaaaggtattagagatttgggactaaattaaaaacctata
gataccataatggaaactctcaagatggaaaattctttatcatcatttca
gaattctgttactgaatatcctatgagcctaatgcataattgtgtaccaa
gccagtagtaattattaagattttactttaagagccaaaaaaaaaaaaaa
aaaaattcaagccagaagagaactgggatagagaatgttgacaggcttct
gctggtgtcactattttggtattttttcctttgtttgggtattatttttg
cagttgttgtgttttgctactttttgaggtaaccctgattaagcaactaa
taatatatttgatatacaatttgataaataggtttctcttgtgattttag
ctaaaacattcagtagataaacagactcctaaaagctgtaagggagtatt
gagaaaccatcaatccagtttcaatttacttgtaatttctttaagaacac
catttttccaccattttaaacttgggaggggtgaatctgatttaaataaa
tgaattacctgagcctgatgattcctggaaagtggcccaatgaggc

actgagctataaagtaccaaggtaaagaaaagtgtatatcactaaggcat
acagccatatgtgtagaggagtttcagtggcaatgaaatgtttcagatta
ttggtaaggagtatgtacagtattattgggaattcatcaaataaaatgtg
ttgggctaaatcacaagaaaacaaaacttaaaatttaactctgaaaaaaa
atccacttctgttagttggcattatttcatttcaaaatatttcataagaa
tcatagttgtagcctgttgcatgtagtttttgaaccatgctaccaccttt
accaggaagctgtgactcttttcctgcatatgtcttttcctcctgggacc
tgaaagttccatctgtactttctgtccagcaattggcttctggtcttctt
tattaacaaatcaagattcaattagagaaacagaccttagtatcagcacc
tctctctgcaccatcctgagaacatgggtaatgtctgtcttatcagtttg
ccattgttgtgaagagaccatgaccatagcaactcttacaatggaaagca
cttaactgggggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_65425374_65426448
seq2: B6Ng01-179A12.b_43_1138 (reverse)

seq1  GCCTCATT-GGCCACTTCCCAGG-ATCATCA-GCTCA-GTAATCAATTTA  46
      |||||||| |||||||| ||||| ||||||| ||||| |||||  |||||
seq2  GCCTCATTGGGCCACTTTCCAGGAATCATCAGGCTCAGGTAATTCATTTA  50

seq1  TTT-AATCAGATTCA-CCCTCC--AGTTTAAA--TGTTGAAAAAT-GTGT  89
      ||| ||||||||||| ||||||  ||||||||   || ||||||| ||||
seq2  TTTAAATCAGATTCACCCCTCCCAAGTTTAAAATGGTGGAAAAATGGTGT  100

seq1  TCTTAA--GAATTAC-AGT-AATTG-AACT-GATTGAT-GTTTCTC-ATA  131
      ||||||   |||||| ||| ||||| |||| ||||||| ||||||| |||
seq2  TCTTAAAGAAATTACAAGTAAATTGAAACTGGATTGATGGTTTCTCAATA  150

seq1  CT-CCTTACAGCTTTTA-GAGTCTGTTTATCTACTGAATGTTTTAGCTAA  179
      || |||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTCCCTTACAGCTTTTAGGAGTCTGTTTATCTACTGAATGTTTTAGCTAA  200

seq1  AATCACAAGAGAAA-CTATTTATCAAATTGTATATCAAATATATTATTAG  228
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AATCACAAGAGAAACCTATTTATCAAATTGTATATCAAATATATTATTAG  250

seq1  TTTGCTTAATCAGGGTTACCTCAAAAAGTAGCAAAACACAACAACTGCAA  278
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTGCTTAATCAGGGTTACCTCAAAAAGTAGCAAAACACAACAACTGCAA  299

seq1  AAATAATACCCAAACAAAGGAAAAAATACCAAAATAGTGACACCAGCAGA  328
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATACCCAAACAAAGGAAAAAATACCAAAATAGTGACACCAGCAGA  349

seq1  AGCCTGTCAACATTCTCTATCCCAGTTCTCTTCTGGCTTGAATTTTTTTT  378
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTCAACATTCTCTATCCCAGTTCTCTTCTGGCTTGAATTTTTTTT  399

seq1  TTTTTTTTTTTGGCTCTTAAAGTAAAATCTTAATAATTACTACTGGCTTG  428
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTGGCTCTTAAAGTAAAATCTTAATAATTACTACTGGCTTG  449

seq1  GTACACAATTATGCATTAGGCTCATAGGATATTCAGTAACAGAATTCTGA  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACAATTATGCATTAGGCTCATAGGATATTCAGTAACAGAATTCTGA  499

seq1  AATGATGATAAAGAATTTTCCATCTTGAGAGTTTCCATTATGGTATCTAT  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGATAAAGAATTTTCCATCTTGAGAGTTTCCATTATGGTATCTAT  549

seq1  AGGTTTTTAATTTAGTCCCAAATCTCTAATACCTTTGATCTTGTTTAACT  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTTAATTTAGTCCCAAATCTCTAATACCTTTGATCTTGTTTAACT  599

seq1  TCATCTTTTTTTAAATGTAAACTCACAGATAGATTTGGAATAAGACACAA  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTTTTTTAAATGTAAACTCACAGATAGATTTGGAATAAGACACAA  649

seq1  TTCTAAAAGGTTAAATTGGCTAAACCATTGTTTTCTGGCATGATCATATA  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAAGGTTAAATTGGCTAAACCATTGTTTTCTGGCATGATCATATA  699

seq1  CTATCAACCAAATATTGGTCATATTGAAATAACCAAAATAAAATGTGACA  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAACCAAATATTGGTCATATTGAAATAACCAAAATAAAATGTGACA  749

seq1  TCAGCACATTTTACTTTACACCAAGCCATCTATTTTGGTTAATATCTAAC  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACATTTTACTTTACACCAAGCCATCTATTTTGGTTAATATCTAAC  799

seq1  TTTTCAGAAGTCCCTTAATGTCCATTACTCCCCATCTTCCAACACCTTTT  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGAAGTCCCTTAATGTCCATTACTCCCCATCTTCCAACACCTTTT  849

seq1  TAATAACATGATAGACTCTAGTTTGGTCAGCAAACATTCACACCTCCGGA  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACATGATAGACTCTAGTTTGGTCAGCAAACATTCACACCTCCGGA  899

seq1  GAGAATACTACAATTAGCCACTTCCCTTCTGTGCCAAGCAGCTGCATGGT  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATACTACAATTAGCCACTTCCCTTCTGTGCCAAGCAGCTGCATGGT  949

seq1  TTTCTAAGCCTCTGATTGGTAATCTTGAGGGTGATATGTGGGTAAGTAAC  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAGCCTCTGATTGGTAATCTTGAGGGTGATATGTGGGTAAGTAAC  999

seq1  CATCTAAAGTAGCTTAGGAAGAGTGACTTTCACAGTAACGTAGCAGAATT  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAAAGTAGCTTAGGAAGAGTGACTTTCACAGTAACGTAGCAGAATT  1049

seq1  CCTGAATTAACCATTCCCTCATCTTGACTTTAATTACAGGTGAATTC  1075
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATTAACCATTCCCTCATCTTGACTTTAATTACAGGTGAATTC  1096


seq1: chr8_65276405_65276981
seq2: B6Ng01-179A12.g_63_639

seq1  GAATTCACTGAGCTATAAAGTACCAAGGTAAAGAAAAGTGTATATCACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGAGCTATAAAGTACCAAGGTAAAGAAAAGTGTATATCACTA  50

seq1  AGGCATACAGCCATATGTGTAGAGGAGTTTCAGTGGCAATGAAATGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATACAGCCATATGTGTAGAGGAGTTTCAGTGGCAATGAAATGTTTC  100

seq1  AGATTATTGGTAAGGAGTATGTACAGTATTATTGGGAATTCATCAAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATTGGTAAGGAGTATGTACAGTATTATTGGGAATTCATCAAATAA  150

seq1  AATGTGTTGGGCTAAATCACAAGAAAACAAAACTTAAAATTTAACTCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTTGGGCTAAATCACAAGAAAACAAAACTTAAAATTTAACTCTGA  200

seq1  AAAAAAATCCACTTCTGTTAGTTGGCATTATTTTATTTCAAAATATTTCA  250
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAAAAAATCCACTTCTGTTAGTTGGCATTATTTCATTTCAAAATATTTCA  250

seq1  TAAGAATCATAGTTGTAGCCTGTTGCATGTAGTTTTTGAACCATGCTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATCATAGTTGTAGCCTGTTGCATGTAGTTTTTGAACCATGCTACC  300

seq1  ACCTTTACCAGGAAGCTGTGACTCTTTTCCTGCATATGTCTTTTCCTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTACCAGGAAGCTGTGACTCTTTTCCTGCATATGTCTTTTCCTCCT  350

seq1  GGGACCTGAAAGTTCCATCTGTACTTTCTGTCCAGCAATTGGCTTCTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCTGAAAGTTCCATCTGTACTTTCTGTCCAGCAATTGGCTTCTGGT  400

seq1  CTTCTTTATTAACAAATCAAGATTCAATTAGAGAAACAGACCTTAGTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTATTAACAAATCAAGATTCAATTAGAGAAACAGACCTTAGTATC  450

seq1  AGCACCTCTCTCTGCACCATCCTGAGAACATGGGTAATGTCTGTCTTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCTCTCTCTGCACCATCCTGAGAACATGGGTAATGTCTGTCTTATC  500

seq1  AGTTTGCCATTGTTGTGAAGAGACCATGACCATAGCAACTCTTACAATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCCATTGTTGTGAAGAGACCATGACCATAGCAACTCTTACAATGG  550

seq1  AAAGCACTTAACTGGGGGGGGGGGGGG  577
      |||||||||||||||||||||||||||
seq2  AAAGCACTTAACTGGGGGGGGGGGGGG  577


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