BAC Information

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BAC

Clone NameB6Ng01-179C16
Chromosome8 (Build37)
Map Location 83,537,326 - 83,538,375
singlet/doubletsinglet
Overlap geneUsp38, EG70793
Upstream geneHhip, LOC546075, Gypa, Frem3, Smarca5, Gab1, LOC666237, LOC100039496, LOC234501, LOC100039518
Downstream geneLOC236010, LOC384852, Inpp4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179C16.bB6Ng01-179C16.g
ACCGA005962GA005963
length1,1351,069
definitionB6Ng01-179C16.b B6Ng01-179C16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgagccccatcttttaagggggttatttgatt
ttctggagtccaccctcttgagttctttatatatattggatagtagtccc
ctatctgatttaagataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgccttggagaagctttgcagtctca
tgaggtcccatttgtcaatcctccatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtgcccatatcttcgaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataggaatggattgattcac
attcttctacatgataacaaccagttgtgccagcaccatttgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtcactataccagtaccatgcagtttttatcacaattgc
tctgtagtacacctttaggtcaggcatggtgattccaccagaggtacttt
tatccttgagaagagttttttgctatcctaggttttttgttattccagat
gaatctgccgattgctctttctaattcgttgaagaattgagttggaattt
tgatggggattgcattgaatctgtagattgcttttggcaagatagccatt
tttacaatgttgatcctaccaatccatgagcatgggagatctttccatct
tctgaggtctttctttaatctttcctcagagacgtgaaggtttttatcat
acagatcttttcacttccttagttagagtcacaccaagatatttttattg
ttatttgtgactattgaagaagggggttgtttcccttaattttcttttcc
tcagcctgtttaattctttgtgtagaagaaagaccaattgaccttgaggt
taatttcatatccaggctaccttccccgaagctgtttatccagttttagg
agtctccttgggtggaaatttatagaatctaccct
gaattccaaaactggagcagaggtggtgtaattaaatgacttgttcagtg
acaaaggtctttggacttaggcatcctcaatgttttggctccagcgtacc
attctgaacaaggcagtgaagaggagtaacattttgcataagggtattta
gttttgctctccatcaagaacgtctcttactggaggagttactctaataa
aataggctacctggcctctttcagtacccccaaacagaatgcttccgggg
gggaaaaaagcgcactgtgttgatgagacacacgtgttgaatttccaaga
cacacttttctgaaataatgacccttacctgtggaagagatgcttgcaaa
aacttcttgcagagaaggtagcagcgtggagggctcagccttccaaatat
tctgtagtaaggtactcactttcgttacctgggagacatactcccgtagt
tccttctcctgagtggacacgcactggaaatgacctatcgttcgaaccag
ctgttgacagaaggtaactgacagtttccctttggggacgcactgcacga
aatcggtcaggaggtcgctcagccgggcacagagcactggctccggcctc
tcgcaaaccattcgcaggacctccacctggagcaggctgaagagatccag
caccgacgggcagctcataatcagcttcaggccgttgtgaatgtagtcca
ggatggcgacgtccttcctgtccactgagtggtagccctgctgaaggagg
cccaacacgaaagtcttgtttgaagaaggactcgaactccggccggtggt
accgcgcgtaggcctccagcacctggtgggcccacttgtcgctggaaagg
gtcctggccctcccaggattgaggcgggttcgtcaggtcaaaacatgggc
ctcgcactgcgcctcgtcgagcaattgcttccgcgaacttccacccacct
ttccgcacaatcattcggcttgaaggggcagcgggtgcgaggagcttcac
aaggcctttccagaatcttgtccatcgtcgccactcttgcaaggccaagg
tccctggggaataaagagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_83537326_83538375
seq2: B6Ng01-179C16.g_65_1133

seq1  GAATTCCAAAACTGGAGCAGAGGTGGTGTAATTAAATGACTTGTTCAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAACTGGAGCAGAGGTGGTGTAATTAAATGACTTGTTCAGTG  50

seq1  ACAAAGGTCTTTGGACTTAGGCATCCTCAATGTTTTGGCTCCAGCGTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGTCTTTGGACTTAGGCATCCTCAATGTTTTGGCTCCAGCGTACC  100

seq1  ATTCTGAACAAGGCAGTGAAGAGGAGTAACATTTTGCATAAGGGTATTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAACAAGGCAGTGAAGAGGAGTAACATTTTGCATAAGGGTATTTA  150

seq1  GTTTTGCTCTCCATCAAGAACGTCTCTTACTGGAGGAGTTACTCTAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCTCTCCATCAAGAACGTCTCTTACTGGAGGAGTTACTCTAATAA  200

seq1  AATAGGCTACCTGGCCTCTTTCAGTACCCCCAAAGAGAATGCTTCCGGGG  250
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AATAGGCTACCTGGCCTCTTTCAGTACCCCCAAACAGAATGCTTCCGGGG  250

seq1  GGGAAAAAAGCGCACTGTGTTGATGAGACACACGTGTTGAATTTCCAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAAAGCGCACTGTGTTGATGAGACACACGTGTTGAATTTCCAAGA  300

seq1  CACACTTTTCTGAAATAATGACCCTTACCTGTGGAAGAGATGCTTGCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTTTCTGAAATAATGACCCTTACCTGTGGAAGAGATGCTTGCAAA  350

seq1  AACTTCTTGCAGAGAAGGTAGCAGCGTGGAGGGCTCAGCCTTCCAAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTTGCAGAGAAGGTAGCAGCGTGGAGGGCTCAGCCTTCCAAATAT  400

seq1  TCTGTAGTAAGGTACTCACTTTCGTTACCTGGGAGACATACTCCCGTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGTAAGGTACTCACTTTCGTTACCTGGGAGACATACTCCCGTAGT  450

seq1  TCCTTCTCCTGAGTGGACACGCACTGGAAATGACCTATCGTTCGAACCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCCTGAGTGGACACGCACTGGAAATGACCTATCGTTCGAACCAG  500

seq1  CTGTTGACAGAAGGTAACTGACAGTTTCCCTTTGGGGACGCACTGCACGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGACAGAAGGTAACTGACAGTTTCCCTTTGGGGACGCACTGCACGA  550

seq1  AATCGGTCAGGAGGTCGCTCAGCCGGGCACAGAGCACTGGCTCCGGCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGGTCAGGAGGTCGCTCAGCCGGGCACAGAGCACTGGCTCCGGCCTC  600

seq1  TCGCAAACCATTCGCAGGACCTCCACCTGGAGCAGGCTGAAGAGATCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCAAACCATTCGCAGGACCTCCACCTGGAGCAGGCTGAAGAGATCCAG  650

seq1  CACCGACGGGCAGCTCATAATCAGCTTCAGGCCGTTGTGAATGTAGTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGACGGGCAGCTCATAATCAGCTTCAGGCCGTTGTGAATGTAGTCCA  700

seq1  GGATGGCGACGTCCTTCCTGTCCACTGAGTGGTAGCCCTGCTGAAGGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGCGACGTCCTTCCTGTCCACTGAGTGGTAGCCCTGCTGAAGGAGG  750

seq1  CCCAACACGAAAGTCTTG-TTGAAGAAGGACTCGAACTCCGGCCGGTGGT  799
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCCAACACGAAAGTCTTGTTTGAAGAAGGACTCGAACTCCGGCCGGTGGT  800

seq1  ACCGCGCGTAGGCCTCCAGCACCTGGT-GGCCCACTTGTCGCTGGAAAGG  848
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACCGCGCGTAGGCCTCCAGCACCTGGTGGGCCCACTTGTCGCTGGAAAGG  850

seq1  GTCCTGGCCCT-CCAGGA-TGAGGCGGG-TCGTCAGGTC-AAACAT-GGC  893
      ||||||||||| |||||| ||||||||| |||||||||| |||||| |||
seq2  GTCCTGGCCCTCCCAGGATTGAGGCGGGTTCGTCAGGTCAAAACATGGGC  900

seq1  CTCGCACTGCGCCTCGTCGAGCCAATGC-TCCGCGAAC-TCCA-CCACC-  939
      |||||||||||||||||||||| | ||| ||||||||| |||| ||||| 
seq2  CTCGCACTGCGCCTCGTCGAGCAATTGCTTCCGCGAACTTCCACCCACCT  950

seq1  TTCCGCACAATCA-TCCGCTTG-AGGGGCAGCGGGTGCGAGGAGC-TCAC  986
      ||||||||||||| || ||||| |||||||||||||||||||||| ||||
seq2  TTCCGCACAATCATTCGGCTTGAAGGGGCAGCGGGTGCGAGGAGCTTCAC  1000

seq1  CAGGCC-TTCCAGAATCTTGTCCATCGTCGCCACTC-TGCAAGGCCA--G  1032
       ||||| ||||||||||||||||||||||||||||| ||||||||||  |
seq2  AAGGCCTTTCCAGAATCTTGTCCATCGTCGCCACTCTTGCAAGGCCAAGG  1050

seq1  GCCCTGGGG-ATAAAGAGC  1050
       |||||||| |||||||||
seq2  TCCCTGGGGAATAAAGAGC  1069