BAC Information

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BAC

Clone NameB6Ng01-179L03
Chromosome8 (Build37)
Map Location 106,876,012 - 107,006,199
singlet/doubletdoublet
Overlap geneCmtm4, Dync1li2, Ccdc79
Upstream geneLOC100041397, LOC667656, Cdh5, Bean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3
Downstream geneAppbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179L03.bB6Ng01-179L03.g
ACCGA006343GA006344
length1,082367
definitionB6Ng01-179L03.b B6Ng01-179L03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,876,012 - 106,877,091)(107,005,827 - 107,006,199)
sequence
gaattcactacctcactgtgtttgccctttctaggagccaataaatatct
ttaggttttcttgactgcagtcttaccctctgagcctttggcagggaagg
tagagaagactggtacctggcattcagtcgagatcaacagggccaaaata
cactttctccgaagacaagttaatatccatcaagactaccaagtgccaga
gggtgtcaaccccatgtctccacgaacacaccacatgtccccaacaactg
catgtcttgccatgttttctccacccaagaaagtgaagccatctcctcag
gaaatggagacggtgaaggctcacgtacaatgctccaaacctaagcaagc
ggcactggtccacagggggcttaataaacacaaaaatatgcctttttcaa
ttcacagggttgctgtacaaacctcaaatctattaccttctgtttgcaca
gaggcacaacaggaaagatacaggtgtctctgctttcacttatagacagc
catattgtcttcatggcttgtgctcaccacactggctgtaaaggtgaggg
gcctgttcatcacgctatgagagcatgtacaagccacttctggctctacg
ggagctagttaaatagtacaaggaaatacatatacaaaagccacgggaaa
gcttcatagcacaaaggatattaaatagtaaccaagatataaatattaca
atgattctgtcactaagatgcaaattgctctcaagtctcttaggccctaa
gacaccaccacattatcatttattggtattcatggtctcaatgggtctca
ggatcatttctttcagccgacaacacttcctcagaaggcctccttttcat
cacaggataaaacgggtttattgaaagggacttgggaaagcgagcagaaa
ccccatctgaatgcttctttcttccgcctcacttcaaagttggctttttc
ctgaggcccagtgacatgctaaagctcaggtggtcattccaagtggggct
cggatacagatggagtcttgcaaccccatttaacggaatttctcttgagc
cagaagcctgattttgattatattagggtata
ttttggtgaaaatgaaattgaactaaaggacataagcgaaaaagagactc
ttagagagcactggaaggcagcaaaggaaattctatgcagaataaaacaa
tttgaaaaaggagggaaagaggtgagtttttcatttcccagaatatagaa
ctctatgcaaatattttaaaatagtataagaatgtttttctccagttgtt
ttaaaatatttttaatgtaagcctagtggtgtaaattttaagagtaatgc
ttaaggactgaagtttgaacatataacagattttttttttacatttattt
ttatctttatcactaaaaagattctatttttatttgtgtgtgtgtgtgta
agagagagggggtgaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_106876012_106877091
seq2: B6Ng01-179L03.b_45_1126

seq1  GAATTCACTACCTCACTGTGTTTGCCCTTTCTAGGAGCCAATACATATCT  50
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAATTCACTACCTCACTGTGTTTGCCCTTTCTAGGAGCCAATAAATATCT  50

seq1  TTAGGTTTTCTTGACTGCAGTCTTACCCTCTGAGCCTTTGGCAGGGAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTTTCTTGACTGCAGTCTTACCCTCTGAGCCTTTGGCAGGGAAGG  100

seq1  TAGAGAAGACTGGTACCTGGCATTCAGTCGAGATCAACAGGGCCAAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAGACTGGTACCTGGCATTCAGTCGAGATCAACAGGGCCAAAATA  150

seq1  CACTTTCTCCGAAGACAAGTTAATATCCATCAAGACTACCAAGTGCCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCTCCGAAGACAAGTTAATATCCATCAAGACTACCAAGTGCCAGA  200

seq1  GGGTGTCAACCCCATGTCTCCACGAACACACCACATGTCCCCAACAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTCAACCCCATGTCTCCACGAACACACCACATGTCCCCAACAACTG  250

seq1  CATGTCTTGCCATGTTTTCTCCACCCAAGAAAGTGAAGCCATCTCCTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTTGCCATGTTTTCTCCACCCAAGAAAGTGAAGCCATCTCCTCAG  300

seq1  GAAATGGAGACGGTGAAGGCTCACGTACAATGCTCCAAACCTAAGCAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGAGACGGTGAAGGCTCACGTACAATGCTCCAAACCTAAGCAAGC  350

seq1  GGCACTGGTCCACAGGGGGCTTAATAAACACAAAAATATGCCTTTTTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGGTCCACAGGGGGCTTAATAAACACAAAAATATGCCTTTTTCAA  400

seq1  TTCACAGGGTTGCTGTACAAACCTCAAATCTATTACCTTCTGTTTGCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGGGTTGCTGTACAAACCTCAAATCTATTACCTTCTGTTTGCACA  450

seq1  GAGGCACAACAGGAAAGATACAGGTGTCTCTGCTTTCACTTATAGACAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCACAACAGGAAAGATACAGGTGTCTCTGCTTTCACTTATAGACAGC  500

seq1  CATATTGTCTTCATGGCTTGTGCTCACCACACTGGCTGTAAAGGTGAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGTCTTCATGGCTTGTGCTCACCACACTGGCTGTAAAGGTGAGGG  550

seq1  GCCTGTTCATCACGCTATGAGAGCATGTACAAGCCACTTCTGGCTCTACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTTCATCACGCTATGAGAGCATGTACAAGCCACTTCTGGCTCTACG  600

seq1  GGAGCTAGTTAAATAGTACAAGGAAATACATATACAAAAGCCACGGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTAGTTAAATAGTACAAGGAAATACATATACAAAAGCCACGGGAAA  650

seq1  GCTTCATAGCACAAAGGATATTAAATAGTAACCAAGATATAAATATTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATAGCACAAAGGATATTAAATAGTAACCAAGATATAAATATTACA  700

seq1  ATGATTCTGTCACTAAGATGCAAATTGCTCTCAAGTCTCTTAGGCCCTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCTGTCACTAAGATGCAAATTGCTCTCAAGTCTCTTAGGCCCTAA  750

seq1  GACACCACCACATTATCATTTATTGGTATTCATGGTCTCAATGGGTCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCACCACATTATCATTTATTGGTATTCATGGTCTCAATGGGTCTCA  800

seq1  GGATCATTTCTTTCAGCCGACAACACTTCCTCAGAAGGCCTCC-TTTCAT  849
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGATCATTTCTTTCAGCCGACAACACTTCCTCAGAAGGCCTCCTTTTCAT  850

seq1  CACAGGATAAAACGGGTTTATTG-AAGGGACTTGGGAAAGCGAGCAGAAA  898
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CACAGGATAAAACGGGTTTATTGAAAGGGACTTGGGAAAGCGAGCAGAAA  900

seq1  CCCCATCTGAATGCTTCTTTCTTCCGCCTCACTTCAAAGGTGGCTTTTTC  948
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCCCATCTGAATGCTTCTTTCTTCCGCCTCACTTCAAAGTTGGCTTTTTC  950

seq1  CTGAGGCCCAGTGACATGCTAAAGCTCAGGGTGGTCATTCCAAGTGGGGC  998
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTGAGGCCCAGTGACATGCTAAAGCTCA-GGTGGTCATTCCAAGTGGGGC  999

seq1  TCGGATACAGATGGAGTCTTTGCAACCCCATTTAAAGGGAATTCTC-TGA  1047
      |||||||||||||||||| |||||||||||||||| || | ||||| |||
seq2  TCGGATACAGATGGAGTC-TTGCAACCCCATTTAACGGAATTTCTCTTGA  1048

seq1  GGCAGAAAGCCTGATTTTGATTATAT--AGGTATA  1080
      | ||| ||||||||||||||||||||   ||||||
seq2  GCCAG-AAGCCTGATTTTGATTATATTAGGGTATA  1082

seq1: chr8_107005827_107006199
seq2: B6Ng01-179L03.g_65_437 (reverse)

seq1  CTTCACCCCCTCTCTCTTACACACACACACACAAATAAAAATAGAATCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCCCCTCTCTCTTACACACACACACACAAATAAAAATAGAATCTT  50

seq1  TTTAGTGATAAAGATAAAAATAAATGTAAAAAAAAAATCTGTTATATGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGATAAAGATAAAAATAAATGTAAAAAAAAAATCTGTTATATGTT  100

seq1  CAAACTTCAGTCCTTAAGCATTACTCTTAAAATTTACACCACTAGGCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTCAGTCCTTAAGCATTACTCTTAAAATTTACACCACTAGGCTTA  150

seq1  CATTAAAAATATTTTAAAACAACTGGAGAAAAACATTCTTATACTATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAAATATTTTAAAACAACTGGAGAAAAACATTCTTATACTATTTT  200

seq1  AAAATATTTGCATAGAGTTCTATATTCTGGGAAATGAAAAACTCACCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTGCATAGAGTTCTATATTCTGGGAAATGAAAAACTCACCTCT  250

seq1  TTCCCTCCTTTTTCAAATTGTTTTATTCTGCATAGAATTTCCTTTGCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCCTTTTTCAAATTGTTTTATTCTGCATAGAATTTCCTTTGCTGC  300

seq1  CTTCCAGTGCTCTCTAAGAGTCTCTTTTTCGCTTATGTCCTTTAGTTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGTGCTCTCTAAGAGTCTCTTTTTCGCTTATGTCCTTTAGTTCAA  350

seq1  TTTCATTTTCACCAAAAGAATTC  373
      |||||||||||||||||||||||
seq2  TTTCATTTTCACCAAAAGAATTC  373