BAC Information

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BAC

Clone NameB6Ng01-179O15
Chromosome8 (Build37)
Map Location 109,145,419 - 109,146,611
singlet/doubletsinglet
Overlap geneCdh1
Upstream gene2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734
Downstream geneTmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812, Psmd7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179O15.bB6Ng01-179O15.g
ACCGA006502GA006503
length1,1871,199
definitionB6Ng01-179O15.b B6Ng01-179O15.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcctctgaagaaacagactgggaggaagaagcagctcattatga
gaaaaaagggtaccagccaggtaaagtgctagctaatcagttaaggaagc
caaaagcggctggcgaaggccagtttgctgattggcctcagggcagtcgg
cttcaaggtccgccctatgcggagtccccgccctgcgtagtgcgtcagcc
ctgcgcagagagatgcgcagagaggcaatgcgcagagagatgcgcagaga
ggcaatgcgcagagagatgcgcagagaggcagtgcgcagagaggcagtgc
gcagactcattcattcccagagaggaacaaaggaaaatacaacaggcatt
tccagtctttgaaggagccgagggtgggcgtgtccacgctccggtagaat
acttacaaattaaagagcttgccgagtcggtccgtaaatacggaaccaat
gctaattttaccttggtgcagttagacaggcttgccggcatggcactaac
tcctgccgactggcaaacggttgtaaaagccgctctccctagtatgggca
aatatatggaatggagagctctttggcatgaaactgcacaagcgcaggcc
cgagcaaacgcagctgctttgactccagagcagagagattggacttttga
cttgttaacgggtcagggagcttattctgctgatcaaacaaactaccatt
ggggagcttatgcccagatttcttccacggctattagggcctggaaggcg
ctctcccgagcaggtgaaaccactggtcagttaacaaagataatccaggg
acctcaggaatccttctcagattttgtggccagaatgacagaggcagcag
agcgtatttttggagagtcagagcaagctgcgcctctgatagaacagcta
atctatgagcaagccacaaaggagtgccgagcggccatagccccaggaag
aacaaaggcttacaagactggctcaggtctgtcgagagcttgggggatcc
tctcaccaattgcaggcttagcggtcggcatcctcaatcttcagatccgc
ttccattgagcagaaatgatcagagacatgttttttaattgcgaaagcct
gggcattttaggaaagaattgcagagcttcagaatatacagggagggacc
tctcacatcttgtgctctcttacagtgtgtgccagag
gaattcagagttcagtgttatccttggctacatagcacacttgaaacaac
tgtgtgtgtgcaaggcatacagacacacttacacattggcacacttgcac
acacacacacacacacacacacaccttgtctacaacttgaagtggcttct
cctcactccccaagtcaagaaccatcagggagagtttctaaataaaccat
caaaccatcaactaccaacaggtctctggcctccgttccttaagatggac
aggcctgtcagggtctgtgctttgggggcaaacaatgtctctctatgtag
ccctggatgtcctggaactcacagagatctacctgcttctgcctcctgag
tactgggatcaaaggcctgagccaccacatccagcgagagtctacgcttt
taagctttctaggtgaggcactccccagcgtaggcttgagaacgtgcgtt
ctggtccagatgatccttatagtaggaccaaaaagacagtccacagccct
aggccaagaggtagaggcaggcagaccgttaggagtttgaggctatccta
gtctacacagtgagttccagaccgcccaaggctagtaaagaccctgtcaa
aagaaaaagaaacaaaaggggagaaaaaaggaaggaaacctacctagcct
acaagaggtcccatgtccaccctcagggctataaaaataagtgaagttaa
aatgcccagtccttgacagacctcatcccaaatatttacgtcagagtccc
taggaatggatttttccttaggtaccaccaccctgtagaaatacactgag
gagcacagggggtggcacacacctgaaatcccaacagaggcagacagata
cagatgtaaaggctaacccgggagtgtgggggagcagagcttagtaggtt
agcagtaaagttgtttgcctaggagacaggtggctctagacttcattcct
agcactggaggagacagactagcagctcattaaaaggtaaaggcttttcc
caagaattcggcagaaagcccttaacattgataaattacttcagccattt
ccaaggatggagctacagacaaaaggattagaggctggcctccccttccc
atttcatctggctctagtctccctttaagttcacctcatcgttccaccat
acctagcctgcattttctaatcctcagtctcctctgttgtgtgtaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_109145419_109146611
seq2: B6Ng01-179O15.g_63_1261 (reverse)

seq1  TCTTTACAAAC-----AGGAGACTGAGGTTTAG-AAAGGCAGGCTAGGGT  44
      |||||||| ||     |||||||||||| |||| ||| |||||||| |||
seq2  TCTTTACACACAACAGAGGAGACTGAGGATTAGAAAATGCAGGCTA-GGT  49

seq1  AGTGGGTGGAAGGGTGAGGTGAACCTACAGGGGAGACTAAGGAGCCAGAT  94
      |   ||||||| | |||||||||| || | |||||||||  |||||||||
seq2  A--TGGTGGAACGATGAGGTGAACTTA-AAGGGAGACTA--GAGCCAGAT  94

seq1  GAATGGGGAAAGGGAGG-CAGCCTCTTAATCCTTTTGTCTGTAGCTCCAT  143
      |||  ||||| |||||| ||||||| ||||||||||||||||||||||||
seq2  GAAATGGGAAGGGGAGGCCAGCCTC-TAATCCTTTTGTCTGTAGCTCCAT  143

seq1  CTTTGGAAAT-GCTG-AGTAATTAATCAATTGTTAAAGGGCTTTCTGCCG  191
      | |||||||| |||| ||||||| ||||| |||| |||||||||||||||
seq2  CCTTGGAAATGGCTGAAGTAATTTATCAA-TGTT-AAGGGCTTTCTGCCG  191

seq1  AATTC-TGGGGAAAGCCTTTA-CTTTTAATGAGCTGCTAGTCTGTCT-CT  238
      ||||| |||| |||||||||| ||||||||||||||||||||||||| ||
seq2  AATTCTTGGGAAAAGCCTTTACCTTTTAATGAGCTGCTAGTCTGTCTCCT  241

seq1  TCAGTGCTGGGAATG-AGTCTAGAGCCACCTGTCTCCTAGGCAAAC-ACT  286
       ||||||| |||||| |||||||||||||||||||||||||||||| |||
seq2  CCAGTGCTAGGAATGAAGTCTAGAGCCACCTGTCTCCTAGGCAAACAACT  291

seq1  TTACTGCTAAACTACTAAGCTCTGCTCCCCCACACT-CCGGGTTAGCCTT  335
      |||||||||| ||||||||||||||||||||||||| |||||||||||||
seq2  TTACTGCTAACCTACTAAGCTCTGCTCCCCCACACTCCCGGGTTAGCCTT  341

seq1  TACATCTGTATCTGTCTGCCTCTGTTGGGATTTCAGGTGTGTGCCACCCC  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCTGTATCTGTCTGCCTCTGTTGGGATTTCAGGTGTGTGCCACCCC  391

seq1  CTGTGCTCCTCAGTGTATTTCTACAGGGTGGTGGTACCTAAGGAAAAATC  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTCCTCAGTGTATTTCTACAGGGTGGTGGTACCTAAGGAAAAATC  441

seq1  CATTCCTAGGGACTCTGACGTAAATATTTGGGATGAGGTCTGTCAAGGAC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTAGGGACTCTGACGTAAATATTTGGGATGAGGTCTGTCAAGGAC  491

seq1  TGGGCATTTTAACTTCACTTATTTTTATAGCCCTGAGGGTGGACATGGGA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATTTTAACTTCACTTATTTTTATAGCCCTGAGGGTGGACATGGGA  541

seq1  CCTCTTGTAGGCTAGGTAGGTTTCCTTCCTTTTTTCTCCCCTTTTGTTTC  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGTAGGCTAGGTAGGTTTCCTTCCTTTTTTCTCCCCTTTTGTTTC  591

seq1  TTTTTCTTTTGACAGGGTCTTTACTAGCCTTGGGCGGTCTGGAACTCACT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTTGACAGGGTCTTTACTAGCCTTGGGCGGTCTGGAACTCACT  641

seq1  GTGTAGACTAGGATAGCCTCAAACTCCTAACGGTCTGCCTGCCTCTACCT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGACTAGGATAGCCTCAAACTCCTAACGGTCTGCCTGCCTCTACCT  691

seq1  CTTGGCCTAGGGCTGTGGACTGTCTTTTTGGTCCTACTATAAGGATCATC  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCCTAGGGCTGTGGACTGTCTTTTTGGTCCTACTATAAGGATCATC  741

seq1  TGGACCAGAACGCACGTTCTCAAGCCTACGCTGGGGAGTGCCTCACCTAG  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCAGAACGCACGTTCTCAAGCCTACGCTGGGGAGTGCCTCACCTAG  791

seq1  AAAGCTTAAAAGCGTAGACTCTCGCTGGATGTGGTGGCTCAGGCCTTTGA  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTAAAAGCGTAGACTCTCGCTGGATGTGGTGGCTCAGGCCTTTGA  841

seq1  TCCCAGTACTCAGGAGGCAGAAGCAGGTAGATCTCTGTGAGTTCCAGGAC  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTACTCAGGAGGCAGAAGCAGGTAGATCTCTGTGAGTTCCAGGAC  891

seq1  ATCCAGGGCTACATAGAGAGACATTGTTTGCCCCCAAAGCACAGACCCTG  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGGCTACATAGAGAGACATTGTTTGCCCCCAAAGCACAGACCCTG  941

seq1  ACAGGCCTGTCCATCTTAAGGAACGGAGGCCAGAGACCTGTTGGTAGTTG  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCCTGTCCATCTTAAGGAACGGAGGCCAGAGACCTGTTGGTAGTTG  991

seq1  ATGGTTTGATGGTTTATTTAGAAACTCTCCCTGATGGTTCTTGACTTGGG  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTGATGGTTTATTTAGAAACTCTCCCTGATGGTTCTTGACTTGGG  1041

seq1  GAGTGAGGAGAAGCCACTTCAAGTTGTAGACAAGGTGTGTGTGTGTGTGT  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGGAGAAGCCACTTCAAGTTGTAGACAAGGTGTGTGTGTGTGTGT  1091

seq1  GTGTGTGTGTGCAAGTGTGCCAATGTGTAAGTGTGTCTGTATGCCTTGCA  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGCAAGTGTGCCAATGTGTAAGTGTGTCTGTATGCCTTGCA  1141

seq1  CACACACAGTTGTTTCAAGTGTGCTATGTAGCCAAGGATAACACTGAACT  1185
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAGTTGTTTCAAGTGTGCTATGTAGCCAAGGATAACACTGAACT  1191

seq1  CTGAATTC  1193
      ||||||||
seq2  CTGAATTC  1199