BAC Information

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BAC

Clone NameB6Ng01-180O20
ChromosomeX (Build37)8 (Build37)
Map Location 107,330,699 - 107,331,21932,050,765 - 32,051,989
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSh3bgrl, EG622976, LOC100042831, LOC213474, LOC245573
Downstream geneEG634340, LOC668530, LOC100043316, Pou3f4, Cylc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180O20.bB6Ng01-180O20.g
ACCGA007231GA007232
length9931,141
definitionB6Ng01-180O20.b B6Ng01-180O20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(107,330,699 - 107,331,219)(32,050,765 - 32,051,989)
sequence
gaattcctgatctttccaagacttttatcatgaatgggtgttggattttg
tcaaatgatttctcagcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatatactggattacgttgatggatttccgtatattgaaca
atccctgcatccctgggatgaaacctacttggtcaggatggatgattgtt
ttgatgtgttcttggattcgggtagcaagaactttattgaggatttttcc
atcgatattcataagggaaattggtctgaagttctctatctttgttgggt
ctttttgtggtttaggtatcagagtaattgtggcttcatagaatgagttg
ggtagagttccttctacttctattttgtggaatagtttgtgcagaactgg
aggtagatctttttgatggtctgatagaactctgcactaaacccatctgg
tcctgtgctttttttggttgggagactattaatgactgcttctatttctt
aggggatataggactgtttagatcattaacctgatcttgatttaactttg
gtacctggtatatgtctagaaacttgtccatttcatcccggttttccagt
tttgttgagtatagccttttgtagaaggatctgatggtgttttggatctt
taggatctgttgtttatgtctcccttttcatttctgattttgctaattag
gatgctttccctgtgctctctagtgagtctggctaagggttttatctatc
ttgttgattttctcaaagaaccagctcctcgtttgggttgattctttgaa
tagttcttcttgttttccacttggttgatttcatccctgagtttgattat
ttctctgccgtctattccttcttggtgaattttccttccttgttttctag
agcttttagatgtgttgccagctgctagtggtgcttctctcaagtttctt
tttggaggcacttcacagctatgagttttcttcttagaagtgc
gaattctcctggatttgtttttgccaattacatagagagttcagaacaaa
gcagactgtgtctgcagttgtataaatctggcccatgtgggtaactggag
catgaacgattgtaacgccataaagaaagcaggatgagagtaccttccct
cctcgagtctgtaccctctaatggcaatattaatcatgatatcattatag
tcctcctcctcagccccacaatcatcaatttggaaaatgtttcttttggt
gacagctccttattacaacatggtattaactggatccacactgactttct
gcctcctttcgctaaccagctgtggagcagtaaatatccacaagcaaaat
attgactctgagggccaggacttgggaaactgatccacaaatgaactgag
ggcagctgcaaacatagagtccccagcattggtgctaactaacttgcaag
tggtgtccagttttagagttcttgggatctcactcaaatgcaggaccttg
ggatgtagctcggttgtagaatgcatgcctaaaaggaatatggcccgaga
ttctgtctccagcaatgaaagaaaagaaaataaagtacaatgggacaaga
aagagttaaaagctagagtctggctttttgcgagcttaatctaggtcaca
gatattttcatcctgaagagtctttgtctggttcattatttaaaaacaaa
aagaatgcaactaccaccaagagaataaccacatggactccctcaacgtc
tgattaaaaactctaactaccctaaattcctattgtggttattggagaac
aaagctgtctcagcattctgggggtctcttaaagtacatttcaaagcact
ttagtttgtgactttctgcaaattagcactctcacgcttttctccctaga
cagaccaaggcaattacattccatcagccacagttgtttctgtttcttcc
cttaagagtctccaactggcagcgaaagtgccaaatgacctgttgaattt
gggtgtgtatctttctgttgcttttttttttttaatcagttagccttgtc
ttctgggcataaacaaagtcaatgtgttttgggttgcctttggttttaga
tctattcaagttagcccttcaaggactcttagcctccctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_107330699_107331219
seq2: B6Ng01-180O20.b_506_1028 (reverse)

seq1  GCATTTCTAAGAAGAAAACTCATAGCTCTG-AGTGCCTCCAAAAAGAAAC  49
      ||| ||||||||||||||||||||||| || |||||||||||||||||||
seq2  GCACTTCTAAGAAGAAAACTCATAGCTGTGAAGTGCCTCCAAAAAGAAAC  50

seq1  TAGAGAG-AGCACAAACTAGCAGCTTGACAAAACAGCTAAAAGCTCTAGA  98
      | ||||| |||||  ||||||||| || ||| ||| ||||||||||||||
seq2  TTGAGAGAAGCAC-CACTAGCAGC-TGGCAACACATCTAAAAGCTCTAGA  98

seq1  ATAAAAGGAA-GCAAATTCAGCCAAGAA-GAGTAGATGGCAG-GAAATAA  145
      | | |||||| | ||||||| ||||||| || |||| ||||| |||||||
seq2  AAACAAGGAAGGAAAATTCA-CCAAGAAGGAATAGACGGCAGAGAAATAA  147

seq1  TCAAACTCAGGAGTGAAAGCAACCAAGTGG-AAACAAGAAGAACTATTCA  194
      |||||||||||  ||||| ||||||||||| |||||||||||||||||||
seq2  TCAAACTCAGGGATGAAATCAACCAAGTGGAAAACAAGAAGAACTATTCA  197

seq1  AAGAATCAACCAAAAAAAGGAGCTGGTTCTTTGAGAAAACCAACAAGATA  244
      ||||||||||| |||  |||||||||||||||||||||| ||||||||||
seq2  AAGAATCAACCCAAACGAGGAGCTGGTTCTTTGAGAAAATCAACAAGATA  247

seq1  GAT-AAACCCTTAGCCAGACACACTAGAGGGCACAGGGACAGCATACTAA  293
      ||| |||||||||||||||| |||||||| ||||||||| ||||| ||||
seq2  GATAAAACCCTTAGCCAGACTCACTAGAGAGCACAGGGAAAGCATCCTAA  297

seq1  TTAACAAAATCAGAAATGAAAAGGGAGACATAAA-AACAGATCCTGAAGA  342
      ||| |||||||||||||||||||||||||||||| |||||||||| ||| 
seq2  TTAGCAAAATCAGAAATGAAAAGGGAGACATAAACAACAGATCCTAAAG-  346

seq1  AATCCAAAACACCATCAGATCTTTCTATAAAAGGCTATACTTAACAAAAC  392
       |||||||||||||||||||| ||||| ||||||||||||| ||||||||
seq2  -ATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAAC  395

seq1  TGGAAAACCTGGAAAAAATGGACAAATTTCTAGACAGATACCAGGTACCA  442
      ||||||||| |||  |||||||||| |||||||||| |||||||||||||
seq2  TGGAAAACCGGGATGAAATGGACAAGTTTCTAGACATATACCAGGTACCA  445

seq1  AAGTTAAATCAGGATCAGGTTAATGATCTAAACAGTCCTATATCCCCTAC  492
      ||||||||||| ||||||||||||||||||||||||||||||||||||| 
seq2  AAGTTAAATCAAGATCAGGTTAATGATCTAAACAGTCCTATATCCCCTA-  494

seq1  AGAAATAGAAGCAGTCATTAATACTCTCC  521
      ||||||||||||||||||||||| |||||
seq2  AGAAATAGAAGCAGTCATTAATAGTCTCC  523

seq1: chr8_32050765_32051989
seq2: B6Ng01-180O20.g_72_1212

seq1  GAATTCTCCTGGATTTGTTTTTGCCAATTACATAGAGAGTTCAGAACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGGATTTGTTTTTGCCAATTACATAGAGAGTTCAGAACAAA  50

seq1  GCAGACTGTGTCTGCAGTTGTATAAATCTGGCCCATGTGGGTAACTGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACTGTGTCTGCAGTTGTATAAATCTGGCCCATGTGGGTAACTGGAG  100

seq1  CATGAACGATTGTAACGCCATAAAGAAAGCAGGATGAGAGTACCTTCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACGATTGTAACGCCATAAAGAAAGCAGGATGAGAGTACCTTCCCT  150

seq1  CCTCGAGTCTGTACCCTCTAATGGCAATATTAATCATGATATCATTATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGAGTCTGTACCCTCTAATGGCAATATTAATCATGATATCATTATAG  200

seq1  TCCTCCTCCTCAGCCCCACAATCATCAATTTGGAAAATGTTTCTTTTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCCTCAGCCCCACAATCATCAATTTGGAAAATGTTTCTTTTGGT  250

seq1  GACAGCTCCTTATTACAACATGGTATTAACTGGATCCACACTGACTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTCCTTATTACAACATGGTATTAACTGGATCCACACTGACTTTCT  300

seq1  GCCTCCTTTCGCTAACCAGCTGTGGAGCAGTAAATATCCACAAGCAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTTTCGCTAACCAGCTGTGGAGCAGTAAATATCCACAAGCAAAAT  350

seq1  ATTGACTCTGAGGGCCAGGACTTGGGAAACTGATCCACAAATGAACTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTCTGAGGGCCAGGACTTGGGAAACTGATCCACAAATGAACTGAG  400

seq1  GGCAGCTGCAAACATAGAGTCCCCAGCATTGGTGCTAACTAACTTGCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTGCAAACATAGAGTCCCCAGCATTGGTGCTAACTAACTTGCAAG  450

seq1  TGGTGTCCAGTTTTAGAGTTCTTGGGATCTCACTCAAATGCAGGACCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCCAGTTTTAGAGTTCTTGGGATCTCACTCAAATGCAGGACCTTG  500

seq1  GGATGTAGCTCGGTTGTAGAATGCATGCCTAAAAGGAATATGGCCCGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTAGCTCGGTTGTAGAATGCATGCCTAAAAGGAATATGGCCCGAGA  550

seq1  TTCTGTCTCCAGCAATGAAAGAAAAGAAAATAAAGTACAATGGGACAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCTCCAGCAATGAAAGAAAAGAAAATAAAGTACAATGGGACAAGA  600

seq1  AAGAGTTAAAAGCTAGAGTCTGGCTTTTTGCGAGCTTAATCTAGGTCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTAAAAGCTAGAGTCTGGCTTTTTGCGAGCTTAATCTAGGTCACA  650

seq1  GATATTTTCATCCTGAAGAGTCTTTGTCTGGTTCATTATTTAAAAACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTTCATCCTGAAGAGTCTTTGTCTGGTTCATTATTTAAAAACAAA  700

seq1  AAGAATGCAACTACCACCAAGAGAATAACCACATGGACTCCCTCAACGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGCAACTACCACCAAGAGAATAACCACATGGACTCCCTCAACGTC  750

seq1  TGATTAAAAACTCTAACTACCCTAAATTCCTATTGTGGTTATTGGAGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAAAAACTCTAACTACCCTAAATTCCTATTGTGGTTATTGGAGAAC  800

seq1  AAAGCTGTCTCAGCATTCTGGGGGTCTCTTAAAGTACATTTCAAAGCACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGTCTCAGCATTCTGGGGGTCTCTTAAAGTACATTTCAAAGCACT  850

seq1  TTAGTTTGTGAC-TTCTGCAAATTAGCACTCTCACGCTTTTCTCCCTAGA  899
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTGTGACTTTCTGCAAATTAGCACTCTCACGCTTTTCTCCCTAGA  900

seq1  CAGACCAAGGCAATTACATTCCA-CAGCCACAGTTGTTTCTG-TTCCTCC  947
      ||||||||||||||||||||||| |||||||||||||||||| ||| |||
seq2  CAGACCAAGGCAATTACATTCCATCAGCCACAGTTGTTTCTGTTTCTTCC  950

seq1  CTT-AGAGTCTCCAACTGGCAGGCGAAAGTGCCAGATGACCTGTTG-ATT  995
      ||| ||||||||||||||||| |||||||||||| ||||||||||| |||
seq2  CTTAAGAGTCTCCAACTGGCA-GCGAAAGTGCCAAATGACCTGTTGAATT  999

seq1  TGTGTGTGTATC-TTCTGTTGCTTTTTTTTTTTT-ATCAG-TAGCCCTG-  1041
      || ||||||||| ||||||||||||||||||||| ||||| ||||| || 
seq2  TGGGTGTGTATCTTTCTGTTGCTTTTTTTTTTTTAATCAGTTAGCCTTGT  1049

seq1  CCTCTGGGCATAAACAA--GCCATGTG-TTTGGGTTGGCTTTGGTTTAAG  1088
      | |||||||||||||||   | ||||| ||||||||| ||||||||| | 
seq2  CTTCTGGGCATAAACAAAGTCAATGTGTTTTGGGTTGCCTTTGGTTTTA-  1098

seq1  GATCTATCAGAGTTAG-CCTTCAA-GACTCTTAGC--TCCTCTTCTTAGC  1134
      |||||||   |||||| ||||||| ||||||||||   |||||       
seq2  GATCTATTCAAGTTAGCCCTTCAAGGACTCTTAGCCTCCCTCT-------  1141

seq1  TGTTTGCTTGTTTCCAGTGCTCTGACTGGGAGCCTGGCCTAAATAGGAAG  1184
                                                        
seq2  --------------------------------------------------  1141

seq1  CCCAGGACCTACATGGCAAAAGGAAAGATTCTACTCCCTCT  1225
                                               
seq2  -----------------------------------------  1141