BAC Information

Click to search

BAC

Clone NameB6Ng01-181G21
Chromosome8 (Build37)
Map Location 104,325,731 - 104,451,244
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneCdh11, EG667618
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181G21.bB6Ng01-181G21.g
ACCGA007594GA007595
length1,2091,108
definitionB6Ng01-181G21.b B6Ng01-181G21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,325,731 - 104,326,950)(104,450,125 - 104,451,244)
sequence
gaattcaatagcttgctttggaaatctagccatagaaagtaatgtcacac
ataaacaacagtttatcgttctatattcatctgagtgctttcttgagctt
tctgcattttagtagccacaaagtagcatgttgagaattgtcccctaaac
agggaaatgagcaattctaaaccaggaaaggagtttttcctctagctgag
cattctagaagaatcaggactatagcataacacccccatgtcacacccct
gccgatgaaatcgggtgctttaaaatataaagattctgttcttccttggg
aaaaaacaatgtttaaattttccagctgacatgttatagtgttttatttc
atgtcgcgttgtttcagccatggcaaatgatgggaagcttcaatgctaac
atggtacaaaacctgccgctcctactgagttatctcactgagacatatca
gcttgaaaacatatgtgggctgcagtcaccattctgaagagcggaaataa
tgttcatgggtcccagagataacaatgttcataattcatttctgatggac
agacaagctatcaccgcataatagtaacactacgttctcattttaataaa
attaagacaatagagagatttgttttacatcaatagatagataaaagtga
aatagtcatgtataacctggaaatcataagcaatcagttctggcaataag
ataaaagagctgtgaaatttaacttataacttagatactagatttgaata
atcacaatatatatgacataagatatatgatattatattcttggtctccc
aaaaataaagctaacttcatatcattaaattgcttacaagcttgtttctc
atttagggggaaggtatttcctggagatatgtttccttgcgtgctttgaa
ttaagaattagaaaataaaacatatttttataaatactacactattttac
atcttcattacctctgacttcagttttatagtgattgtaaaaaactgctt
tctctgaaacttagttccttctaacactttcaaacattacagccagtttt
tattatctttaaggatagcttcatcattcactttctctactcgaaacttc
aactgaatattcccactttccaatgccattcttgaatagcagaatgtgct
agctcaggccctctcgatcccatggaaataatgaaacccgaaaatttccc
aactctttt

gaattctgcagataaagcaaaaatgaagtcactgtgaaatatgctgattt
gactacaaagtagttggcttgatttttcacatgtacaacaacttcagctg
gttaacgacttgaatttgaaactgacaaaactcgctaggtgtctcctcta
tggggtagaaagtgtctcagactgaaatgtaagtctgattacaaggtagc
tttgtgatcctgacatataaggagagaaaacaaaaaaagaaatagaaaaa
gaaatgatgtgatcttgatcagtatccattgagagacttaaaaagatctg
caaagccctgcgagtttggagacttcatgtggaatgggtgtcacttttag
ttgaggctagaagtaaacgtaattggaggagagcctggaatcccaggtga
taccagggaggcattttggctagacatgcctcaagtttcatagtattgta
tgatggtgaatcacaacaactgggtacattgttaattggctcttgtgaga
gagcttcatagctgtaaactctctctctctctctctcacacacacacata
catatgtatatatacatacacacatacatatatgtgtatatatattatat
atatgtatatatatacttttaaatgtttaggatagatacagtgaattaaa
tatgtaaatttaaaaaataattatatgaacattttatgagcaattaatgt
tagaaaggattgtatttatttctcacctcccttgatgcaagtaaagcaat
cttccctctcttcatagtcctttgttcagcatctcaattgctcttctcaa
atggcgagggttcaaatgtacagatattttcttatttagcatttggatct
cgattgagacaataaaatgctccatgttttaaactacacctttgggaaat
tgtaaaggaatatgagatcatcttagatgtataaatgtgttgctcttttc
atggcaagcaatgaaaatgaactatcatgagaaactatgaagtgttttca
aatgcagtatgacagagtttcattttcagtccaaccagggcatcatatat
tgatgcaatgtatcactggaaagagaaaaaatctgcacttagaaaggcct
caagttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_104325731_104326950
seq2: B6Ng01-181G21.b_44_1252

seq1  GAATTCAATAGCTTGCTTTGGAAATCTAGCCATAGAAAGTAATGTCACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAGCTTGCTTTGGAAATCTAGCCATAGAAAGTAATGTCACAC  50

seq1  ATAAACAACAGTTTATCGTTCTATATTCATCTGAGTGCTTTCTTGAGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAACAGTTTATCGTTCTATATTCATCTGAGTGCTTTCTTGAGCTT  100

seq1  TCTGCATTTTAGTAGCCACAAAGTAGCATGTTGAGAATTGTCCCCTAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATTTTAGTAGCCACAAAGTAGCATGTTGAGAATTGTCCCCTAAAC  150

seq1  AGGGAAATGAGCAATTCTAAACCAGGAAAGGAGTTTTTCCTCTAGCTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAATGAGCAATTCTAAACCAGGAAAGGAGTTTTTCCTCTAGCTGAG  200

seq1  CATTCTAGAAGAATCAGGACTATAGCATAACACCCCCATGTCACACCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTAGAAGAATCAGGACTATAGCATAACACCCCCATGTCACACCCCT  250

seq1  GCCGATGAAATCGGGTGCTTTAAAATATAAAGATTCTGTTCTTCCTTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGATGAAATCGGGTGCTTTAAAATATAAAGATTCTGTTCTTCCTTGGG  300

seq1  AAAAAACAATGTTTAAATTTTCCAGCTGACATGTTATAGTGTTTTATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAATGTTTAAATTTTCCAGCTGACATGTTATAGTGTTTTATTTC  350

seq1  ATGTCGCGTTGTTTCAGCCATGGCAAATGATGGGAAGCTTCAATGCTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCGCGTTGTTTCAGCCATGGCAAATGATGGGAAGCTTCAATGCTAAC  400

seq1  ATGGTACAAAACCTGCCGCTCCTACTGAGTTATCTCACTGAGACATATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTACAAAACCTGCCGCTCCTACTGAGTTATCTCACTGAGACATATCA  450

seq1  GCTTGAAAACATATGTGGGCTGCAGTCACCATTCTGAAGAGCGGAAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAAAACATATGTGGGCTGCAGTCACCATTCTGAAGAGCGGAAATAA  500

seq1  TGTTCATGGGTCCCAGAGATAACAATGTTCATAATTCATTTCTGATGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATGGGTCCCAGAGATAACAATGTTCATAATTCATTTCTGATGGAC  550

seq1  AGACAAGCTATCACCGCATAATAGTAACACTACGTTCTCATTTTAATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGCTATCACCGCATAATAGTAACACTACGTTCTCATTTTAATAAA  600

seq1  ATTAAGACAATAGAGAGATTTGTTTTACATCAATAGATAGATAAAAGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGACAATAGAGAGATTTGTTTTACATCAATAGATAGATAAAAGTGA  650

seq1  AATAGTCATGTATAACCTGGAAATCATAAGCAATCAGTTCTGGCAATAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTCATGTATAACCTGGAAATCATAAGCAATCAGTTCTGGCAATAAG  700

seq1  ATAAAAGAGCTGTGAAATTTAACTTATAACTTAGATACTAGATTTGAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGAGCTGTGAAATTTAACTTATAACTTAGATACTAGATTTGAATA  750

seq1  ATCACAATATATATGACATAAGATATATGATATTATATTCTTGGTCTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAATATATATGACATAAGATATATGATATTATATTCTTGGTCTCCC  800

seq1  AAAAATAAAGCTAACTTCATATCATTAAATTGCTTACAAGCTTGTTTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAAGCTAACTTCATATCATTAAATTGCTTACAAGCTTGTTTCTC  850

seq1  ATTTAGGGGGAAGGTATTTCCTGGAGATATGTTTCCTTGCGTGCTTTGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGGGGAAGGTATTTCCTGGAGATATGTTTCCTTGCGTGCTTTGAA  900

seq1  TTAAGAATTAGAAAATAAAAACATATTTTTATAAATACTACACTATTTTA  950
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTAAGAATTAGAAAAT-AAAACATATTTTTATAAATACTACACTATTTTA  949

seq1  CATCTTCATTACCTCTGACTTCAAGTTTTATAGTGATTGTAAAAAACTGC  1000
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CATCTTCATTACCTCTGACTTC-AGTTTTATAGTGATTGTAAAAAACTGC  998

seq1  TTTCTCTGAAACTTAGTTCCTTCTAACACTTTCAAACATTACAGCCAAGT  1050
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTCTCTGAAACTTAGTTCCTTCTAACACTTTCAAACATTACAGCC-AGT  1047

seq1  TTTTATTATCTTTAAGGATAGCTCCAATCATTCAC-TTCTCTACTCAGAA  1099
      ||||||||||||||||||||||| | ||||||||| |||||||||| |||
seq2  TTTTATTATCTTTAAGGATAGCTTC-ATCATTCACTTTCTCTACTC-GAA  1095

seq1  ACTTCAACTGGAATAATTTCCACTTTCAAATGCCAT--CTGAGTAGCCAA  1147
      ||||||||| |||| ||| |||||||| ||||||||   ||| ||| || 
seq2  ACTTCAACT-GAAT-ATTCCCACTTTCCAATGCCATTCTTGAATAG-CAG  1142

seq1  GATGTGCTAGCTCAG--CCTCTCCAAATTTCCCAATGAAATAATTAGAAA  1195
       ||||||||||||||  |||||| |    |||||  ||||||||  ||||
seq2  AATGTGCTAGCTCAGGCCCTCTCGA----TCCCATGGAAATAAT--GAAA  1186

seq1  CCCAAAAAAATTTCCAAACTCTTTT  1220
      |||   ||||||||| |||||||||
seq2  CCC--GAAAATTTCCCAACTCTTTT  1209


seq1: chr8_104450125_104451244
seq2: B6Ng01-181G21.g_60_1167 (reverse)

seq1  TAAATTTGAGGCTTTTCTAAAAGTTGGCAGATTTTTTTCTCCTTTTCAGT  50
      |||| ||||||| |||||  ||||  ||||| |||||||| |||| ||||
seq2  TAAACTTGAGGCCTTTCT--AAGT--GCAGA-TTTTTTCT-CTTTCCAGT  44

seq1  GATACATTTCCATTAAATATATGATGGCCCTTGTTGTGACTGAAAATGAA  100
      |||||||| |   | |||||||||| ||||| |||| |||||||||||||
seq2  GATACATTGC--ATCAATATATGAT-GCCCTGGTTG-GACTGAAAATGAA  90

seq1  ACTCTGTCATACTGGCATTTGAAAACACTTCATAGTTTCTCATTGATAGG  150
      ||||||||||||| |||||||||||||||||||||||||||| ||||| |
seq2  ACTCTGTCATACT-GCATTTGAAAACACTTCATAGTTTCTCA-TGATA-G  137

seq1  TTCATTTTCATTGCTTGCCATGAAAAGAGCAACACATTTATACATCTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTCATTGCTTGCCATGAAAAGAGCAACACATTTATACATCTAAG  187

seq1  ATGATCTCATATTCCTTTACAATTT-CCAAAGGTGTAGTTTAAAACATGG  249
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATGATCTCATATTCCTTTACAATTTCCCAAAGGTGTAGTTTAAAACATGG  237

seq1  AGCATTTTATTGTCTCAATCGAGATCCAAATGCTAAATAAGAAAATATCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTTATTGTCTCAATCGAGATCCAAATGCTAAATAAGAAAATATCT  287

seq1  GTACATTTGAACCCTCGCCATTTGAGAAGAGCAATTGAGATGCTGAACAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATTTGAACCCTCGCCATTTGAGAAGAGCAATTGAGATGCTGAACAA  337

seq1  AGGACTATGAAGAGAGGGAAGATTGCTTTACTTGCATCAAGGGAGGTGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTATGAAGAGAGGGAAGATTGCTTTACTTGCATCAAGGGAGGTGAG  387

seq1  AAATAAATACAATCCTTTCTAACATTAATTGCTCATAAAATGTTCATATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATACAATCCTTTCTAACATTAATTGCTCATAAAATGTTCATATA  437

seq1  ATTATTTTTTAAATTTACATATTTAATTCACTGTATCTATCCTAAACATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTTTAAATTTACATATTTAATTCACTGTATCTATCCTAAACATT  487

seq1  TAAAAGTATATATATACATATATATAATATATATACACATATATGTATGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTATATATATACATATATATAATATATATACACATATATGTATGT  537

seq1  GTGTATGTATATATACATATGTATGTGTGTGTGTGAGAGAGAGAGAGAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGTATATATACATATGTATGTGTGTGTGTGAGAGAGAGAGAGAGA  587

seq1  GAGTTTACAGCTATGAAGCTCTCTCACAAGAGCCAATTAACAATGTACCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTACAGCTATGAAGCTCTCTCACAAGAGCCAATTAACAATGTACCC  637

seq1  AGTTGTTGTGATTCACCATCATACAATACTATGAAACTTGAGGCATGTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTGTGATTCACCATCATACAATACTATGAAACTTGAGGCATGTCT  687

seq1  AGCCAAAATGCCTCCCTGGTATCACCTGGGATTCCAGGCTCTCCTCCAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAAATGCCTCCCTGGTATCACCTGGGATTCCAGGCTCTCCTCCAAT  737

seq1  TACGTTTACTTCTAGCCTCAACTAAAAGTGACACCCATTCCACATGAAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTTTACTTCTAGCCTCAACTAAAAGTGACACCCATTCCACATGAAGT  787

seq1  CTCCAAACTCGCAGGGCTTTGCAGATCTTTTTAAGTCTCTCAATGGATAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAACTCGCAGGGCTTTGCAGATCTTTTTAAGTCTCTCAATGGATAC  837

seq1  TGATCAAGATCACATCATTTCTTTTTCTATTTCTTTTTTTGTTTTCTCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAAGATCACATCATTTCTTTTTCTATTTCTTTTTTTGTTTTCTCTC  887

seq1  CTTATATGTCAGGATCACAAAGCTACCTTGTAATCAGACTTACATTTCAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATGTCAGGATCACAAAGCTACCTTGTAATCAGACTTACATTTCAG  937

seq1  TCTGAGACACTTTCTACCCCATAGAGGAGACACCTAGCGAGTTTTGTCAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGACACTTTCTACCCCATAGAGGAGACACCTAGCGAGTTTTGTCAG  987

seq1  TTTCAAATTCAAGTCGTTAACCAGCTGAAGTTGTTGTACATGTGAAAAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATTCAAGTCGTTAACCAGCTGAAGTTGTTGTACATGTGAAAAAT  1037

seq1  CAAGCCAACTACTTTGTAGTCAAATCAGCATATTTCACAGTGACTTCATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCAACTACTTTGTAGTCAAATCAGCATATTTCACAGTGACTTCATT  1087

seq1  TTTGCTTTATCTGCAGAATTC  1120
      |||||||||||||||||||||
seq2  TTTGCTTTATCTGCAGAATTC  1108


| Home | SequenceCutter | Blast | Download |