BAC Information

Click to search

BAC

Clone NameB6Ng01-181L17
Chromosome8 (Build37)3 (Build37)
Map Location 60,029,460 - 60,029,73414,347,255 - 14,348,142
singlet/doubletsingletsinglet
Overlap geneGalnt7, LOC100040634
Upstream geneFbxo8, LOC100040431, EG624433, LOC654355, LOC100040515, Hand2, Scrg1, Sap30, Hmgb2, LOC547012
Downstream geneLOC100040711, 4930431L04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181L17.bB6Ng01-181L17.g
ACCGA007814GA007815
length822888
definitionB6Ng01-181L17.b B6Ng01-181L17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(60,029,460 - 60,029,734)(14,347,255 - 14,348,142)
sequence
gaattcactaacttgcttctaatatgcaatgtagcctgctatacctggct
gtagtgtagattcctgtctcagtgggattccctaactttttcatggtaaa
tccaaatatttgctaggccattgtgaattcccttgtctgggtaagactgg
ctactgtcccaagtaaacactctgcagaccagccctggtcttttctggct
ccattctttgtaatgcctagttagtttcactgtctctactagaagtaaat
ttggatgttactgaataggtagccttcttactgaattcctactgaattcc
aagtttgtcagcttcaaggtctttctaggacattggaacactgacaaagg
cttagctatgtcagaattcaaggtttaaaggcacttataataaaataata
ctaaaagagagcacatggatccatacaccagactaacgtggggatagggt
atgagtatatgggttatgagaatgcctggttccaggaggttaagtttcca
tgaaactctttgccttgtgagtgcttccaggcctctcggcctgccaagca
gactacactggagtgtgcatagcattccccttttgccgatgctcccatgt
ttgtaatgggtgtgaaccacaagaaatatgacaaactcattcaagattgt
cagaaaatgaatcctgtatcaccaactgcttatcatccctccccccaagg
gtcacccatgagaactttgacatctcagaagggttcatgaccacggtcca
tgactttactaccactcagcagactgtggatgtcccctctggaaagctgt
ggtgtgatgacatggtgctgcc

gaattccacgaatctttcaaagaagacttaatacgaataatcctcaaatt
attccactaaatagaaacagaaaacatggataagttgattttatgaggtc
acagttatcctgacatgcaaaccacacaaagaactacactctcagcaaag
agatgcagaacattttcctttacggattttgccaaatccaagaaaacatc
aaaaagattctcactacaatcaaataggcttcattccagagatccagaaa
tagttcaatagacaaaaatctaccagtgtaatttaccatacaaataaact
tttaaaaaatatccacataatcgtctcattaggtgctgaaaaaaatataa
ataaataaataaataaataaataaataaataaataaataaaccttcattc
tgtcatctttaaccaatagaaatagatgcagggacctagagccagaactg
gtcaattcttcaaaagaagaggatgaaggattggaggagccaaaagagtc
aatgaaaaactctacagaatccatgaaaaactccacagaatcaactaaaa
tgggcatatagggactcacagactctgagccacaaaccagagagcctgaa
tgggactgatgtagatcctctgcatgtatggtacagttttatggtttggt
cttcttgtgggactcttaacagtgggaacagggacttgtttctgattctg
tttccaggttttgggacctgttcctcctattggattgcctagttcagttt
aataggagaggaggtacctagttacctagtcttactgcaatgttatatgc
catagttggttgatatccatgggaggtcttgtccttttctaaagagaaac
agtaaagtaatggatggccaggagtagatgtggggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_60029460_60029734
seq2: B6Ng01-181L17.b_619_864

seq1  CCCCTTCTGCCGATGCCCCCATGTTTGTGATGGGTGTGAACCACGAGAAA  50
      |||||| ||||||||| ||||||||||| ||||||||||||||| |||||
seq2  CCCCTTTTGCCGATGCTCCCATGTTTGTAATGGGTGTGAACCACAAGAAA  50

seq1  TATGAC-AACTCACTCAAGATTGTCAG-CAATGCATTCTGCACCACCAAC  98
      |||||| |||||| |||||||||||||  |||| || ||| | |||||||
seq2  TATGACAAACTCATTCAAGATTGTCAGAAAATGAATCCTGTATCACCAAC  100

seq1  TGCTTAGCCCCCCTGGCC---AAGGTCATCCATGACAACTTTGGCATTGT  145
      |||||| |  ||||  ||   | ||||| |||||| ||||||| |||   
seq2  TGCTTATCATCCCTCCCCCCAAGGGTCACCCATGAGAACTTTGACATCTC  150

seq1  GGAAGGGCTCATGACCACAGTCCATGCCATCACTGCCACCCAGAAGACTG  195
       |||||| |||||||||| ||||||| | | ||| |||| ||| ||||||
seq2  AGAAGGGTTCATGACCACGGTCCATGACTTTACTACCACTCAGCAGACTG  200

seq1  TGGATGGCCCCTCTGGAAAGCTGTGGCGTGATGGTCGTGGGGCTGCCCAG  245
      |||||| ||||||||||||||||||| ||||| | | ||| ||||||   
seq2  TGGATGTCCCCTCTGGAAAGCTGTGGTGTGAT-GACATGGTGCTGCC---  246

seq1  AACATCATCCCTGCATCCACTGGTGCTGCC  275
                                    
seq2  ------------------------------  246


seq1: chr3_14347255_14348142
seq2: B6Ng01-181L17.g_67_954

seq1  GAATTCCACGAATCTTTCAAAGAAGACTTAATACGAATAATCCTCAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGAATCTTTCAAAGAAGACTTAATACGAATAATCCTCAAATT  50

seq1  ATTCCACTAAATAGAAACAGAAAACATGGATAAGTTGATTTTATGAGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCACTAAATAGAAACAGAAAACATGGATAAGTTGATTTTATGAGGTC  100

seq1  ACAGTTATCCTGACATGCAAACCACACAAAGAACTACACTCTCAGCAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTATCCTGACATGCAAACCACACAAAGAACTACACTCTCAGCAAAG  150

seq1  AGATGCAGAACATTTTCCTTTACGGATTTTGCCAAATCCAAGAAAACATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCAGAACATTTTCCTTTACGGATTTTGCCAAATCCAAGAAAACATC  200

seq1  AAAAAGATTCTCACTACAATCAAATAGGCTTCATTCCAGAGATCCAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGATTCTCACTACAATCAAATAGGCTTCATTCCAGAGATCCAGAAA  250

seq1  TAGTTCAATAGACAAAAATCTACCAGTGTAATTTACCATACAAATAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCAATAGACAAAAATCTACCAGTGTAATTTACCATACAAATAAACT  300

seq1  TTTAAAAAATATCCACATAATCGTCTCATTAGGTGCTGAAAAAAATATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAATATCCACATAATCGTCTCATTAGGTGCTGAAAAAAATATAA  350

seq1  ATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAACCTTCATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAACCTTCATTC  400

seq1  TGTCATCTTTAACCAATAGAAATAGATGCAGGGACCTAGAGCCAGAACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCTTTAACCAATAGAAATAGATGCAGGGACCTAGAGCCAGAACTG  450

seq1  GTCAATTCTTCAAAAGAAGAGGATGAAGGATTGGAGGAGCCAAAAGAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATTCTTCAAAAGAAGAGGATGAAGGATTGGAGGAGCCAAAAGAGTC  500

seq1  AATGAAAAACTCTACAGAATCCATGAAAAACTCCACAGAATCAACTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAAACTCTACAGAATCCATGAAAAACTCCACAGAATCAACTAAAA  550

seq1  TGGGCATATAGGGACTCACAGACTCTGAGCCACAAACCAGAGAGCCTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATATAGGGACTCACAGACTCTGAGCCACAAACCAGAGAGCCTGAA  600

seq1  TGGGACTGATGTAGATCCTCTGCATGTATGGTACAGTTTTATGGTTTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTGATGTAGATCCTCTGCATGTATGGTACAGTTTTATGGTTTGGT  650

seq1  CTTCTTGTGGGACTCTTAACAGTGGGAACAGGGACTTGTTTCTGATTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGTGGGACTCTTAACAGTGGGAACAGGGACTTGTTTCTGATTCTG  700

seq1  TTTCCAGGTTTTGGGACCTGTTCCTCCTATTGGATTGCCTAGTTCAGGTT  750
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTCCAGGTTTTGGGACCTGTTCCTCCTATTGGATTGCCTAGTTCA-GTT  749

seq1  TAATAGGAGAGGAGGTACCTAGTTACCTAGTCTTACTGCAATGTTATATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGGAGAGGAGGTACCTAGTTACCTAGTCTTACTGCAATGTTATATG  799

seq1  CCATAGTTGGTTGATATCCATGGGAGGTC-TGTCCTTTTCTAAAGAGAAA  849
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCATAGTTGGTTGATATCCATGGGAGGTCTTGTCCTTTTCTAAAGAGAAA  849

seq1  CAGTAAAGTAATGGATGGCCAGGAGTAGATGTGGGGAGG  888
      ||||||||||||||||||||||||||||||||||||| |
seq2  CAGTAAAGTAATGGATGGCCAGGAGTAGATGTGGGGAAG  888


| Home | SequenceCutter | Blast | Download |