BAC Information

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BAC

Clone NameB6Ng01-182A18
Chromosome8 (Build37)
Map Location 90,117,635 - 90,280,587
singlet/doubletdoublet
Overlap geneZfp423
Upstream geneLonp2, Siah1a, ENSMUSG00000074178, BC004022, LOC666960, EG625298, EG330819, Cbln1, LOC100040294, 4933402J07Rik
Downstream geneLOC100040328, 5033428A16Rik, Heatr3, Papd5, Adcy7, Brd7, LOC100040369, Nkd1, 9130017C17Rik, Nod2, Cyld
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182A18.bB6Ng01-182A18.g
ACCGA008044GA008045
length1,169368
definitionB6Ng01-182A18.b B6Ng01-182A18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,117,635 - 90,118,805)(90,280,215 - 90,280,587)
sequence
ctggaaacccttgggccagttaacagcaaaagagaccctgtccaagcaac
atggaagatgaaaagtcagggttctcctctgacctccacactcatactgt
ggcaagcccaccattgacaacagccccctccccacacacacacaccacag
ttaaaccgtgtgtggaggtgtacatctgtcacctcagcatcagggtgact
aagatgagtttaaggccaacctgggttacacaggtagaccagatctcaag
tagaagctaagaaaaatacaaataaaacagttatactcagacttttggta
acaatgttctggttttctgtttgaaaaacaaaagcctcagccgggcgtgg
tggcgcacgcctttaatcccagcactcgggaggcagaggcaggcgggttt
ctgagttcgaggccagcctggtctacagagtgagttccaggacaaccagg
gctacacagagaaaccctgtctcaaaaaaccaaaaaaaaaaaaaaagaaa
gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaga
aagaaagaaagaaagaaagaaagaaagaaagaaggaaagaaagagaagaa
aaacaaaagcctcaaccttaaaggtggtcttccttcctacctgtcttccc
tcctcttcttccctcccaagcattttccctctagaggccaccaggtggcg
ctcgatcccagcagaagatgctctgctcaaggcacccacagatgtccact
cagctgctaacctagctgtaggcccatccaaaggtggcaggacattccag
actgagctctgggtgtcacatgcatgcagctgttcacaacccagctgagg
gcctctgggcatgtcacttcctcaaggctgtgattccccccaacccccaa
aataggatcaaaaatgtatttcagaccaaggtggtatctatgtataccac
tagacaggacttaaggcaaattgaaaagggacattaaagctgctaactcc
aaggaggggtccctccagtacttgtgacagcagggcacacaatttccgag
gtaaaccccacccctctgagaactgcacatgaacctgactgtgatcaaat
tcttgtgttgccagtcggcaggtttgatgctgcatgaactgcaggcatgt
ttcgtatactgcagtcaca
ctgccccgcctctaggatttgtatcgtggggaggtggggaggattctggg
ccacaccacacctgctgttgctagctgagaagctcagtgagaaccttgga
gctgttaggagactccagaaacgaggccaacagatctgtctcaaatcata
atctcacaggtgtacttcttgagggtgcccttgggccgccggatgagagg
tatcccgggagagtggagatatgtggcaagggcgctctgctctgcaagga
gggttttgtacattttacggctgaggtggggaatctctccctgggaaccc
cttgttcgtcccatcatttagaggtcttgaaaacttttatgtcagccctg
tcctggtgggtggtctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_90117635_90118805
seq2: B6Ng01-182A18.b_37_1205

seq1  CTGGAAACCCTTGGGCCAGTTAACAGCAAAAGAGACCCTGTCCAAGCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAACCCTTGGGCCAGTTAACAGCAAAAGAGACCCTGTCCAAGCAAC  50

seq1  ATGGAAGATGAAAAGTCAGGGTTCTCCTCTGACCTCCACACTCATACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGATGAAAAGTCAGGGTTCTCCTCTGACCTCCACACTCATACTGT  100

seq1  GGCAAGCCCACCATTGACAACAGCCCCCTCCCCACACACACACACCACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCCCACCATTGACAACAGCCCCCTCCCCACACACACACACCACAG  150

seq1  TTAAACCGTGTGTGGAGGTGTACATCTGTCACCTCAGCATCAGGGTGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACCGTGTGTGGAGGTGTACATCTGTCACCTCAGCATCAGGGTGACT  200

seq1  AAGATGAGTTTAAGGCCAACCTGGGTTACACAGGTAGACCAGATCTCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAGTTTAAGGCCAACCTGGGTTACACAGGTAGACCAGATCTCAAG  250

seq1  TAGAAGCTAAGAAAAATACAAATAAAACAGTTATACTCAGACTTTTGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCTAAGAAAAATACAAATAAAACAGTTATACTCAGACTTTTGGTA  300

seq1  ACAATGTTCTGGTTTTCTGTTTGAAAAACAAAAGCCTCAGCCGGGCGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTTCTGGTTTTCTGTTTGAAAAACAAAAGCCTCAGCCGGGCGTGG  350

seq1  TGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGGTTT  400

seq1  CTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAACCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAACCAGG  450

seq1  GCTACACAGAGAAACCCTGTCTCAAAAAACCAAAAAAAAAAAAAAAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACACAGAGAAACCCTGTCTCAAAAAACCAAAAAAAAAAAAAAAGAAA  500

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  550

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGGAAAGAAAGAGAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGGAAAGAAAGAGAAGAA  600

seq1  AAACAAAAGCCTCAACCTTAAAGGTGGTCTTCCTTCCTACCTGTCTTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAGCCTCAACCTTAAAGGTGGTCTTCCTTCCTACCTGTCTTCCC  650

seq1  TCCTCTTCTTCCCTCCCAAGCATTTTCCCTCTAGAGGCCACCAGGTGGCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTCTTCCCTCCCAAGCATTTTCCCTCTAGAGGCCACCAGGTGGCG  700

seq1  CTCGATCCCAGCAGAAGATGCTCTGCTCAAGGCACCCACAGATGTCCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGATCCCAGCAGAAGATGCTCTGCTCAAGGCACCCACAGATGTCCACT  750

seq1  CAGCTGCTAACCTAGCTGTAGGCCCATCCAAAGGTGGCAGGACATTCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCTAACCTAGCTGTAGGCCCATCCAAAGGTGGCAGGACATTCCAG  800

seq1  ACTGAGCTCTGGGTGTCACATGCATGCAGCTGTTCACAACCCAGCTGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCTCTGGGTGTCACATGCATGCAGCTGTTCACAACCCAGCTGAGG  850

seq1  GCCTCTGGGCATGTCACTTCCTCAAGGCTGTGATTCCCCCCAACCCCCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGGGCATGTCACTTCCTCAAGGCTGTGATTCCCCCCAACCCCCAA  900

seq1  AATAGGATCAAAAAATGTATTTCAGACCAAGGTGGTATCCATGTATACCA  950
      ||||||||| ||||||||||||||||||||||||||||| ||||||||| 
seq2  AATAGGATC-AAAAATGTATTTCAGACCAAGGTGGTATCTATGTATACC-  948

seq1  ACTAGACAGGACTTAAGGCAAATTGAAAA-GGACATTAAAGCTGCTAACA  999
      ||||||||||||||||||||||||||||| ||||||||||||||||||| 
seq2  ACTAGACAGGACTTAAGGCAAATTGAAAAGGGACATTAAAGCTGCTAACT  998

seq1  CCAAAGGAGGGG-CCCT-CAGTACCTTGTGACAGCAGGGCACACA--TTC  1045
      || ||||||||| |||| ||||| |||||||||||||||||||||  |||
seq2  CC-AAGGAGGGGTCCCTCCAGTA-CTTGTGACAGCAGGGCACACAATTTC  1046

seq1  CGAGGTAAACCCCA-CCCTCTGAGACATGCACATGACCCTGACCTGTGTC  1094
      |||||||||||||| ||||||||||  ||||||||| ||||| |||||  
seq2  CGAGGTAAACCCCACCCCTCTGAGAACTGCACATGAACCTGA-CTGTGAT  1095

seq1  CAAATTC-TGTG-TGCAAGTCGGCAGTTTTTAAATGTCTGCCATGAACAT  1142
      ||||||| |||| ||| ||||||||| |||   ||| ||| ||||||| |
seq2  CAAATTCTTGTGTTGCCAGTCGGCAGGTTT--GATG-CTG-CATGAAC-T  1140

seq1  GCCAGGCAATGTTCGTATACTGCAG-CACA  1171
      | ||||||   |||||||||||||| ||||
seq2  G-CAGGCATGTTTCGTATACTGCAGTCACA  1169

seq1: chr8_90280215_90280587
seq2: B6Ng01-182A18.g_65_438 (reverse)

seq1  GCAGACCACCCACCAGGACA-GGCTGACATAAAAGTGTTCAAGACCTCTA  49
      |||||||||||||||||||| ||||||||||||||| |||||||||||||
seq2  GCAGACCACCCACCAGGACAGGGCTGACATAAAAGTTTTCAAGACCTCTA  50

seq1  AATGATGGGAGGAACAAGGGGTTCCCAGGTAGAGCTTCCCCACCTCAACC  99
      |||||||||| |||||||||||||||||| |||| |||||||||||| ||
seq2  AATGATGGGACGAACAAGGGGTTCCCAGGGAGAGATTCCCCACCTCAGCC  100

seq1  GTAAAATCTACAAAACCCTCCTTGCAGAGCAGAGCGCCCTTGCCACATAT  149
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATGTACAAAACCCTCCTTGCAGAGCAGAGCGCCCTTGCCACATAT  150

seq1  CTCCACTCTCCCGGGATACCTCTCATCCGGCGGCCCAAGGGCACCCTCAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTCTCCCGGGATACCTCTCATCCGGCGGCCCAAGGGCACCCTCAA  200

seq1  GAAGTACACCTGTGAGATTATGATTTGAGACAGATCTGTTGGCCTCGTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTACACCTGTGAGATTATGATTTGAGACAGATCTGTTGGCCTCGTTT  250

seq1  CTGGAGTCTCCTAACAGCTCCAAGGTTCTCACTGAGCTTCTCAGCTAGCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTCTCCTAACAGCTCCAAGGTTCTCACTGAGCTTCTCAGCTAGCA  300

seq1  ACAGCAGGTGTGGTGTGGCCCAGAATCCTCCCCACCTCCCCACGATACAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGGTGTGGTGTGGCCCAGAATCCTCCCCACCTCCCCACGATACAA  350

seq1  ATCCTAGAGGCGGGGCAGGAATTC  373
      ||||||||||||||||||||||||
seq2  ATCCTAGAGGCGGGGCAGGAATTC  374