BAC Information

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BAC

Clone NameB6Ng01-182B09
Chromosome8 (Build37)4 (Build37)
Map Location 41,542,414 - 41,543,11835,861,519 - 35,862,654
singlet/doubletsingletsinglet
Overlap geneZdhhc2
Upstream geneLOC434304, Msr1, EG621431, LOC100039072, LOC666959, EG632166, Fgf20, 2900075B16Rik
Downstream geneCnot7, Vps37a, Mtmr7, LOC100039179, Adam24, LOC667019, LOC100039170, LOC436137, Adam25, EG667041, LOC667052, LOC384806, Adam39, LOC384808, EG667077, Slc7a2, Pdgfrl, Mtus1, Fgl1, Pcm1, Asah1, Frg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182B09.bB6Ng01-182B09.g
ACCGA008074GA008075
length9681,126
definitionB6Ng01-182B09.b B6Ng01-182B09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,542,414 - 41,543,118)(35,861,519 - 35,862,654)
sequence
gaattcctaggataaagaagtgtgttaactcatttacctaatggcacatt
ccatagataaaagagaaactgaggccatgcagtataggtaaagcagacac
tgtcatggaatatgttatgacacgatgagtaagaatcaacaagatttcac
atttcctgggcccagattccttcctttacttccatacagggtataacagc
aaatatacaacttacttgtatactttaaagactgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgttctggacgaccgtgggagatgagaaatct
tgttcaggtaaaagaaagctgtaaagggaaagtaaaggaacggagacgtg
tttctgaggctgggggatgccatcaaacagaggagctgctccctacaaga
aaactgtagggggtgggggagcagtggaagctagggagaagtgtgcgaga
aagaagggaagaaacaagagaggtataatcgcaagagatctcgaatgaaa
aagcccttaaccttccctgttctctcctgttcctaagaaaatcacaacct
atacgcactacgcaccacctagtgtggacttgtgagcattcatgtctctt
cagtgtgtcacccctggaagatgtaaaatttgtgcgataattgtaataaa
tgtttgaaatcagccatggcgactttagcatgattaacatgtatgcagaa
tgaaaaaacggtaacaaggataggagagtcgaccttccctagcagacctt
aaagatagccctccataaagtcactttaacttaatgccttagaagtaggc
aaaaaataaaaaaagtaaaaaaatccaaaaaacaaacgacaaacaaacaa
caaaaccccaaaaacgcaagaatgagttctaagtagaaaatcttatttac
cctacttgtgtatttgtctgcttactattctaccaccatggcagttttcc
ttgaagtttaaagtttaa
gaattccagcacctggtttttgttcttggtactcttgctactttattaat
gtataaatctcaaagaacgtttatacttattaaaggaaatttgaggaaat
tctgtaattaatggataaatatttatttgtatatacacatatatgaaaca
tgtatatttcatatatatatatataattttaaagtatttataagtattca
atgatgcactaagtttataacaagagtttaaatcttaagcttccagaata
ttgaggcatgaagggaaacatgttttttttcatgtgaggttctgcctgca
aaggacccctgtgcttaagacctccactatacagggctcatcatcctaat
ttccgtctgtctgtccttattctccttctatgcacgtctattatagtccc
catcacaaaacacagatctgaaaaagagccctatattggaagtccctgaa
tggaagttatgtatttaagaaccatggaggtttctctataaagcatgctt
ctttggaataccacaagaagcatcggatcacatgctgaggctgatgaaac
tgtgaatgcataaggcaagatcacccctgggtttcagcaaatacatggtg
tagaaaaacctaggtcctaattgtgtattcagtggtgaggactttcggat
gtcattaccctgtgaaggatgagtgagactatccttagaaaatggaacta
ggagttcctctactctccccaccctctgcggacacatgaattatgaggtc
atctgtgcagcaggattggagtcctcagcttctcctaatctctctgagtc
ttctagccatcagacgtttgtgcacgagagcttcttctgttgtacccatg
ccgactgtgacattttattacagcatgctccagatgaactaagacagcta
gctattcctgacgttaataccttcacgagtagtatcactaccatgaaaaa
caaaaaactttactgagggagtatctacgaagtcagagtacgtcttgcat
cacctgccttgctacagattaagtttacaggatccatcataatactaagc
aatgaattagacaacagtcaatggtatatcgtgccttcgacgcgttgcaa
atccccgttaactggacatgacagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_41542414_41543118
seq2: B6Ng01-182B09.b_307_1004 (reverse)

seq1  TTAAACTTTAAACTTTCAAGGAAAACTGCATTGGTGGGTAGAATAGTAAG  50
      ||||||||||||| |||||||||||||||  |||| ||||||||||||||
seq2  TTAAACTTTAAAC-TTCAAGGAAAACTGCCATGGT-GGTAGAATAGTAAG  48

seq1  CAGACAAATACACAAGTATGGTTAAATAAGATTTTCTACTTAGAACTCAT  100
      |||||||||||||||||| || ||||||||||||||||||||||||||||
seq2  CAGACAAATACACAAGTA-GGGTAAATAAGATTTTCTACTTAGAACTCAT  97

seq1  TCTTGCGTTTTTTGGGGTTTTTGTTTGTTTGTTTGTCTGTTTGTTTTTTG  150
      ||||||| |||||||||||||   ||||||||||||| ||||||||||||
seq2  TCTTGCG-TTTTTGGGGTTTT--GTTGTTTGTTTGTC-GTTTGTTTTTTG  143

seq1  GATTTTTTTACTTTTTTTATTTTTTTGCCTACTTCTAAGGCATTAAGTT-  199
      ||||||||||||||||||| ||||||||||||||||||||||||||||| 
seq2  GATTTTTTTACTTTTTTTA-TTTTTTGCCTACTTCTAAGGCATTAAGTTA  192

seq1  AAGTGACTTTATGGAGGGCTATCTTTAAGGTCTGCTAGGGAAGGTCGACT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACTTTATGGAGGGCTATCTTTAAGGTCTGCTAGGGAAGGTCGACT  242

seq1  CTCCTATCCTTGTTACCGTTTTTTCATTCTGCATACATGTTAATCATGCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTATCCTTGTTACCGTTTTTTCATTCTGCATACATGTTAATCATGCT  292

seq1  AAAGTCGCCATGGCTGATTTCAAACATTTATTACAATTATCGCACAAATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCGCCATGGCTGATTTCAAACATTTATTACAATTATCGCACAAATT  342

seq1  TTACATCTTCCAGGGGTGACACACTGAAGAGACATGAATGCTCACAAGTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCTTCCAGGGGTGACACACTGAAGAGACATGAATGCTCACAAGTC  392

seq1  CACACTAGGTGGTGCGTAGTGCGTATAGGTTGTGATTTTCTTAGGAACAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTAGGTGGTGCGTAGTGCGTATAGGTTGTGATTTTCTTAGGAACAG  442

seq1  GAGAGAACAGGGAAGGTTAAGGGCTTTTTCATTCGAGATCTCTTGCGATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAACAGGGAAGGTTAAGGGCTTTTTCATTCGAGATCTCTTGCGATT  492

seq1  ATACCTCTCTTGTTTCTTCCCTTCTTTCTCGCACACTTCTCCCTAGCTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTCTCTTGTTTCTTCCCTTCTTTCTCGCACACTTCTCCCTAGCTTC  542

seq1  CACTGCTCCCCCACCCCCTACAGTTTTCTTGTAGGGAGCAGCTCCTCTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTCCCCCACCCCCTACAGTTTTCTTGTAGGGAGCAGCTCCTCTGT  592

seq1  TTGATGGCATCCCCCAGCCTCAGAAACACGTCTCCGTTCCTTTACTTTCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGCATCCCCCAGCCTCAGAAACACGTCTCCGTTCCTTTACTTTCC  642

seq1  CTTTACAGCTTTCTTTTACCTGAACAAGATTTCTCATCTCCCACGGTCGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAGCTTTCTTTTACCTGAACAAGATTTCTCATCTCCCACGGTCGT  692

seq1  CCAGAA  705
      ||||||
seq2  CCAGAA  698

seq1: chr4_35861519_35862654
seq2: B6Ng01-182B09.g_62_1187

seq1  GAATTCCAGCACCTGGTTTTTGTTCTTGGTACTCTTGCTACTTTATTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCACCTGGTTTTTGTTCTTGGTACTCTTGCTACTTTATTAAT  50

seq1  GTATAAATCTCAAAGAACGTTTATACTTATTAAAGGAAATTTGAGGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAATCTCAAAGAACGTTTATACTTATTAAAGGAAATTTGAGGAAAT  100

seq1  TCTGTAATTAATGGATAAATATTTATTTGTATATACACATATATGAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAATTAATGGATAAATATTTATTTGTATATACACATATATGAAACA  150

seq1  TGTATATTTCATATATATATATATAATTTTAAAGTATTTATAAGTATTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATTTCATATATATATATATAATTTTAAAGTATTTATAAGTATTCA  200

seq1  ATGATGCACTAAGTTTATAACAAGAGTTTAAATCTTAGGCTTCCAGAAGA  250
      ||||||||||||||||||||||||||||||||||||| |||||||||| |
seq2  ATGATGCACTAAGTTTATAACAAGAGTTTAAATCTTAAGCTTCCAGAATA  250

seq1  TTGAGGCATGAAGGGAAACATGTTTTTTTTCATGTGAGGTTCTGCCTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCATGAAGGGAAACATGTTTTTTTTCATGTGAGGTTCTGCCTGCA  300

seq1  AAGGACCCCTGTGCTTAAGACCTCCACTATACAGTGCTCATCAGCCTAAT  350
      |||||||||||||||||||||||||||||||||| |||||||| ||||||
seq2  AAGGACCCCTGTGCTTAAGACCTCCACTATACAGGGCTCATCATCCTAAT  350

seq1  TTCCGTCTGTCTGTCCTTATTCTCCTTCTATGCACGTCTATTATAGTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGTCTGTCTGTCCTTATTCTCCTTCTATGCACGTCTATTATAGTCCC  400

seq1  CATCACAAAACACAAATCTGAAAAAGAGCCCTATATTGGAAGTCCCTGAA  450
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CATCACAAAACACAGATCTGAAAAAGAGCCCTATATTGGAAGTCCCTGAA  450

seq1  TGGAAGTTATGTATTTAAGAACCATGGAGGTTTCTCTATAAAGCATGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTTATGTATTTAAGAACCATGGAGGTTTCTCTATAAAGCATGCTT  500

seq1  CTTTGGAATACCACAAGAAGCATCGGATCACATGCTGAGGCTGATGAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGAATACCACAAGAAGCATCGGATCACATGCTGAGGCTGATGAAAC  550

seq1  TGTGAATGCATAAGGCAAGATCACCCCTGGGTTTCAGCAAATACATGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATGCATAAGGCAAGATCACCCCTGGGTTTCAGCAAATACATGGTG  600

seq1  TAGAAAAACCTAGGTCCTAATTGTGTATTCAGTGGTGAGGCCTTTCGGAT  650
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TAGAAAAACCTAGGTCCTAATTGTGTATTCAGTGGTGAGGACTTTCGGAT  650

seq1  GTCATTAACCTGTGAAGGATGAGTGAGACTATCCTTAGAAAATGGAACTA  700
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTACCCTGTGAAGGATGAGTGAGACTATCCTTAGAAAATGGAACTA  700

seq1  GGAGTTCCTCTACTCTCCCCACCCTCTGCGGACACATGAATTATGAGGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTCCTCTACTCTCCCCACCCTCTGCGGACACATGAATTATGAGGTC  750

seq1  ATCTGTGCAGCAGGATTGGAGTCCTCAGCTTCTCCTAAATCTCTCTTAGT  800
      |||||||||||||||||||||||||||||||||||| ||||||||| |||
seq2  ATCTGTGCAGCAGGATTGGAGTCCTCAGCTTCTCCT-AATCTCTCTGAGT  799

seq1  CTTCTTAGCCATCAGACGTTTGTGCAGGAGAGC-TCTTTTGTTTGTAAGC  849
      |||| ||||||||||||||||||||| |||||| |||| || |||| | |
seq2  CTTC-TAGCCATCAGACGTTTGTGCACGAGAGCTTCTTCTG-TTGT-ACC  846

seq1  CATGCAGACTGTGGCATTTTATTACAG-AAGCTCCAG-TGAACAAAGACA  897
      ||||| ||||||| ||||||||||||| | ||||||| ||||| ||||||
seq2  CATGCCGACTGTGACATTTTATTACAGCATGCTCCAGATGAACTAAGACA  896

seq1  GCTAGCTATTCCTGACGTTAATACCTTCACAATAAGTATTCACTACCATG  947
      |||||||||||||||||||||||||||||| |  |||| |||||||||||
seq2  GCTAGCTATTCCTGACGTTAATACCTTCACGAGTAGTA-TCACTACCATG  945

seq1  AAAAAAAAAAAAACTTTACTGGGGGAGGTATCTACGAAATTCAGAGTAC-  996
       ||||| |||||||||||||| |||| ||||||||| || ||||||||| 
seq2  -AAAAACAAAAAACTTTACTGAGGGA-GTATCTACG-AAGTCAGAGTACG  992

seq1  TCTTTCCTTAATTTGCTTGTTACAAATAAATTTTACA-GTTCCATCATAT  1045
      |||| | | |  |  |||| |||| || || |||||| | ||||||||| 
seq2  TCTTGCATCACCTGCCTTGCTACAGATTAAGTTTACAGGATCCATCATA-  1041

seq1  ATACTTAGCAATTGTATTTTGACAACAATCATATGTAATATGGTGGCTTT  1095
      ||||| ||||||   | || ||||||| ||| |||  |||| ||| ||| 
seq2  ATACTAAGCAAT--GAATTAGACAACAGTCA-ATGGTATATCGTGCCTTC  1088

seq1  GAGGTG-TGCAATATCCTCTTTAAACATGGGACATGACAGAA  1136
      || | | ||||| |||| | |||   |  |||||||||||||
seq2  GACGCGTTGCAA-ATCCCCGTTA---ACTGGACATGACAGAA  1126