BAC Information

Click to search

BAC

Clone NameB6Ng01-182C16
Chromosome8 (Build37)
Map Location 48,056,592 - 48,275,111
singlet/doubletdoublet
Overlap geneEnpp6, Stox2
Upstream gene1700029J07Rik, 1810047C23Rik, Ankrd37, Lrp2bp, Snx25, 4933411K20Rik, Slc25a4, LOC621269, LOC100039875, LOC667325, Helt, LOC667337, Acsl1, Mlf1ip, Ccdc111, Casp3, Irf2
Downstream gene4930448N21Rik, D030016E14Rik, Rwdd4a, LOC384819, LOC667422, Ing2, LOC546058, Cdkn2aip, LOC100039801, Cldn22, Wwc2, LOC100040113, Dctd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182C16.bB6Ng01-182C16.g
ACCGA008136GA008137
length1,0291,057
definitionB6Ng01-182C16.b B6Ng01-182C16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,056,592 - 48,057,624)(48,274,063 - 48,275,111)
sequence
gaattctttccacagacatcacaaagacctgggagccgagaggatgtcct
agagccacctaggcagtgggtctcagaagaagcaccttctagagtcctgg
ctgccttggggttcagctcatcacattcctggcagccccatcaggtttgg
ggaaggttttgttacattagatttttctaaaacccaatttaatactaaac
tcatgaagtaactagtgtacatttaaagaaataatacattctctctgcga
cctgtatgccacacttgctcttttataacataagatctgtgggcgctgca
tgaaggtggcctaatgtcagtgtttgggtctagaaatggtcactattttt
attaagatgaaaaaattctctgtgaaattttttatctgaaagtgttttga
agccacggatctcttcagagaacaggctcccagtacataatggagcgttg
tggtccagtcccttacatagagaggacagcctgggatcaataatgaccaa
atgtcccaagtagagaaatgttgtcccagagagtaaaatttaggccattt
tagccccccatgaccctgtgcaaggagacgtagggtgactattaacattt
gtcaaggaaggaaattggcaccccctcctgcatctgacggcgaggctcca
tggagacaggtgcttgctgtgatctgacagcaagcagcagaaatcattac
tggtagtgcaaaaggtctcgtccagaccgctttataagaaaggagtttat
caaaggtactgcacagaaatgcagccagaagcaagcaaaggcaggcactg
acgagccctctcctccttcttagatgataagcaaaagaatgtgatgttct
taatttactggaaaaagggaaggagcaggcaggaagccaaaagaaagttt
atttttcaaaataataataatttaaatcctgctatatatccagaactgtg
tgctctataactctaagaagacctgagggataatgactctttaggaagat
ggtcctacccgtgtctttctctagtcact
gaattcctaattttgccgttttatattaggaccctttggttagaaatgag
gtgacgagcttgctttctatataattccctaggttcgccacgttaccttc
caaatgcatgaaagagtataaaaagagaatactggattttagagttttca
actggagtggtattccagtgagagatcactgtcatgtggctgctgtgcca
tccctgtgaggggtgtgaattcgaaggaggccatttatggggatctaccc
ttaaaattattcattaagcgattatgattctaccaagaaaaatggttttc
ctctcttcacttgaaggttttagtgattacccagaagttacggttagcca
tgttttcagtctagtttgtagaaactaaagaatattaaaatgcgtgcttg
catgcacacacacacacaacttgaactgtgctgtgtgaaaagtaatattt
aaaataaaacatcttgacatgaaaaggtcgctgtttcaaatgtgagacct
ccccccaactggctgagaaacatccacacaattaccagagagactccagg
cagccatggacatgtgctctggaaaactctgtgccagaaagaggatggac
agcaagcagaatcagtgaatctcccatctaggaagtcctaaatacacttt
taagacagtctttccacatagttctgactgtcctggaactcactatgtag
accaggctggcctcaaactcatgaaatttacctgttctgcctcccaagtg
ctgggattaaagatgtgtaccaccacacctggcctaaatagctcctttaa
aaggttgtgttccatttttttttttcaaaattaaattgataaatatttca
ttagtaaaaagcccatcttctgttggattttcatcagtatatccagatcc
ctctgtgtgaacgtcaccaaacactgctcatgattacagctgtagttgaa
atctaattctttgcaagaaatttagagtactgtgcctatccatccctacc
gatgcaattacgatgtagctcagaagtgatcagccgcatccttatcccca
ggacata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_48056592_48057624
seq2: B6Ng01-182C16.b_44_1072

seq1  GAATTCTTTCCACAGACATCACAAAGACCTGGGAGCCGAGAGGATGTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCACAGACATCACAAAGACCTGGGAGCCGAGAGGATGTCCT  50

seq1  AGAGCCACCTAGGCAGTGGGTCTCAGAAGAAGCACCTTCTAGAGTCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCACCTAGGCAGTGGGTCTCAGAAGAAGCACCTTCTAGAGTCCTGG  100

seq1  CTGCCTTGGGGTTCAGCTCATCACATTCCTGGCAGCCCCATCAGGTTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTGGGGTTCAGCTCATCACATTCCTGGCAGCCCCATCAGGTTTGG  150

seq1  GGAAGGTTTTGTTACATTAGATTTTTCTAAAACCCAATTTAATACTAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTTTTGTTACATTAGATTTTTCTAAAACCCAATTTAATACTAAAC  200

seq1  TCATGAAGTAACTAGTGTACATTTAAAGAAATAATACATTCTCTCTGCGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAAGTAACTAGTGTACATTTAAAGAAATAATACATTCTCTCTGCGA  250

seq1  CCTGTATGCCACACTTGCTCTTTTATAACATAAGATCTGTGGGCGCTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATGCCACACTTGCTCTTTTATAACATAAGATCTGTGGGCGCTGCA  300

seq1  TGAAGGTGGCCTAATGTCAGTGTTTGGGTCTAGAAATGGTCACTATTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTGGCCTAATGTCAGTGTTTGGGTCTAGAAATGGTCACTATTTTT  350

seq1  ATTAAGATGAAAAAATTCTCTGTGAAATTTTTTATCTGAAAGTGTTTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGATGAAAAAATTCTCTGTGAAATTTTTTATCTGAAAGTGTTTTGA  400

seq1  AGCCACGGATCTCTTCAGAGAACAGGCTCCCAGTACATAATGGAGCGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACGGATCTCTTCAGAGAACAGGCTCCCAGTACATAATGGAGCGTTG  450

seq1  TGGTCCAGTCCCTTACATAGAGAGGACAGCCTGGGATCAATAATGACCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCAGTCCCTTACATAGAGAGGACAGCCTGGGATCAATAATGACCAA  500

seq1  ATGTCCCAAGTAGAGAAATGTTGTCCCAGAGAGTAAAATTTAGGCCATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCCAAGTAGAGAAATGTTGTCCCAGAGAGTAAAATTTAGGCCATTT  550

seq1  TAGCCCCCCATGACCCTGTGCAAGGAGACGTAGGGTGACTATTAACATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCCCCATGACCCTGTGCAAGGAGACGTAGGGTGACTATTAACATTT  600

seq1  GTCAAGGAAGGAAATTGGCACCCCCTCCTGCATCTGACGGCGAGGCTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGAAGGAAATTGGCACCCCCTCCTGCATCTGACGGCGAGGCTCCA  650

seq1  TGGAGACAGGTGCTTGCTGTGATCTGACAGCAAGCAGCAGAAATCATTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACAGGTGCTTGCTGTGATCTGACAGCAAGCAGCAGAAATCATTAC  700

seq1  TGGTAGTGCAAAAGGTCTCGTCCAGACCGCTTTATAAGAAAGGAGTTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTGCAAAAGGTCTCGTCCAGACCGCTTTATAAGAAAGGAGTTTAT  750

seq1  CAAAGGTACTGCACAGAAATGCAGCCAGAAGCAAGCAAAGGCAGGCACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTACTGCACAGAAATGCAGCCAGAAGCAAGCAAAGGCAGGCACTG  800

seq1  ACGAGCCCTCTCCTCCTTCTTAGATGATAAGCAAAAGAATGTGATGTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGCCCTCTCCTCCTTCTTAGATGATAAGCAAAAGAATGTGATGTTCT  850

seq1  TAATTTACTGGAAAAAGGGAAGGAGCAGGCAGGAAGCCAAAAAGAAAGTT  900
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TAATTTACTGGAAAAAGGGAAGGAGCAGGCAGGAAGCC-AAAAGAAAGTT  899

seq1  TATTTTTCAAAATAATAATAATTTAAATCCTGCTATATATCCAGAACTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCAAAATAATAATAATTTAAATCCTGCTATATATCCAGAACTGT  949

seq1  GTGCTCTATAACTTCTAAG-AGACCTGAAGGAATAATGACTCTTTAGGAA  999
      |||||||||||| |||||| ||||||| ||| ||||||||||||||||||
seq2  GTGCTCTATAAC-TCTAAGAAGACCTG-AGGGATAATGACTCTTTAGGAA  997

seq1  GATGGTCCTACCCCGTGTCTTTCTCTAGTTCACT  1033
      |||||||||| ||||||||||||||||| |||||
seq2  GATGGTCCTA-CCCGTGTCTTTCTCTAG-TCACT  1029

seq1: chr8_48274063_48275111
seq2: B6Ng01-182C16.g_63_1119 (reverse)

seq1  TATGTCTTTGGGATAA-GATGCGCTTGATCACTTCTGAGCTACATC-TAA  48
      |||||| | ||||||| ||||||  ||||||||||||||||||||| |||
seq2  TATGTCCTGGGGATAAGGATGCGGCTGATCACTTCTGAGCTACATCGTAA  50

seq1  -TGCATCCGTAGGGATGGATAGGCACAGTACTCT-AATTTC-TGCAAAGA  95
       |||||| |||||||||||||||||||||||||| |||||| ||||||||
seq2  TTGCATCGGTAGGGATGGATAGGCACAGTACTCTAAATTTCTTGCAAAGA  100

seq1  A-TAGATTTC-ACTACAGCTGTAATCATGAGCAGTGTTT-GTGACGTTCA  142
      | |||||||| |||||||||||||||||||||||||||| ||||||||||
seq2  ATTAGATTTCAACTACAGCTGTAATCATGAGCAGTGTTTGGTGACGTTCA  150

seq1  CACAGAGGGATCTGGATATACTGATGAAAATCCAACAG-AGAT-GGCTTT  190
      |||||||||||||||||||||||||||||||||||||| |||| ||||||
seq2  CACAGAGGGATCTGGATATACTGATGAAAATCCAACAGAAGATGGGCTTT  200

seq1  TTACTAATGAAAATATTTATCAATTTTAATTTTGAAAAAAAAAAATGGAA  240
      ||||||||| ||||||||||||| ||||||||||||||||||||||||||
seq2  TTACTAATG-AAATATTTATCAA-TTTAATTTTGAAAAAAAAAAATGGAA  248

seq1  CACAACCTTTTAAAGGAGCTATTTAGGCCAGGTGTGGTGGTACACATCTT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCTTTTAAAGGAGCTATTTAGGCCAGGTGTGGTGGTACACATCTT  298

seq1  TAATCCCAGCACTTGGGAGGCAGAACAGGTAAATTTCATGAGTTTGAGGC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCAGCACTTGGGAGGCAGAACAGGTAAATTTCATGAGTTTGAGGC  348

seq1  CAGCCTGGTCTACATAGTGAGTTCCAGGACAGTCAGAACTATGTGGAAAG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGTCTACATAGTGAGTTCCAGGACAGTCAGAACTATGTGGAAAG  398

seq1  ACTGTCTTAAAAGTGTATTTAGGACTTCCTAGATGGGAGATTCACTGATT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTTAAAAGTGTATTTAGGACTTCCTAGATGGGAGATTCACTGATT  448

seq1  CTGCTTGCTGTCCATCCTCTTTCTGGCACAGAGTTTTCCAGAGCACATGT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGCTGTCCATCCTCTTTCTGGCACAGAGTTTTCCAGAGCACATGT  498

seq1  CCATGGCTGCCTGGAGTCTCTCTGGTAATTGTGTGGATGTTTCTCAGCCA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCTGCCTGGAGTCTCTCTGGTAATTGTGTGGATGTTTCTCAGCCA  548

seq1  GTTGGGGGGAGGTCTCACATTTGAAACAGCGACCTTTTCATGTCAAGATG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGGGGAGGTCTCACATTTGAAACAGCGACCTTTTCATGTCAAGATG  598

seq1  TTTTATTTTAAATATTACTTTTCACACAGCACAGTTCAAGTTGTGTGTGT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTAAATATTACTTTTCACACAGCACAGTTCAAGTTGTGTGTGT  648

seq1  GTGTGCATGCAAGCACGCATTTTAATATTCTTTAGTTTCTACAAACTAGA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCATGCAAGCACGCATTTTAATATTCTTTAGTTTCTACAAACTAGA  698

seq1  CTGAAAACATGGCTAACCGTAACTTCTGGGTAATCACTAAAACCTTCAAG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAACATGGCTAACCGTAACTTCTGGGTAATCACTAAAACCTTCAAG  748

seq1  TGAAGAGAGGAAAACCATTTTTCTTGGTAGAATCATAATCGCTTAATGAA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGAGGAAAACCATTTTTCTTGGTAGAATCATAATCGCTTAATGAA  798

seq1  TAATTTTAAGGGTAGATCCCCATAAATGGCCTCCTTCGAATTCACACCCC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTAAGGGTAGATCCCCATAAATGGCCTCCTTCGAATTCACACCCC  848

seq1  TCACAGGGATGGCACAGCAGCCACATGACAGTGATCTCTCACTGGAATAC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGGATGGCACAGCAGCCACATGACAGTGATCTCTCACTGGAATAC  898

seq1  CACTCCAGTTGAAAACTCTAAAATCCAGTATTCTCTTTTTATACTCTTTC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCAGTTGAAAACTCTAAAATCCAGTATTCTCTTTTTATACTCTTTC  948

seq1  ATGCATTTGGAAGGTAACGTGGCGAACCTAGGGAATTATATAGAAAGCAA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTTGGAAGGTAACGTGGCGAACCTAGGGAATTATATAGAAAGCAA  998

seq1  GCTCGTCACCTCATTTCTAACCAAAGGGTCCTAATATAAAACGGCAAAAT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGTCACCTCATTTCTAACCAAAGGGTCCTAATATAAAACGGCAAAAT  1048

seq1  TAGGAATTC  1049
      |||||||||
seq2  TAGGAATTC  1057