BAC Information

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BAC

Clone NameB6Ng01-182M14
Chromosome8 (Build37)
Map Location 47,685,675 - 47,789,076
singlet/doubletdoublet
Overlap geneCcdc111, Casp3
Upstream geneSorbs2, Pdlim3, Ccdc110, 1700029J07Rik, 1810047C23Rik, Ankrd37, Lrp2bp, Snx25, 4933411K20Rik, Slc25a4, LOC621269, LOC100039875, LOC667325, Helt, LOC667337, Acsl1, Mlf1ip
Downstream geneIrf2, Enpp6, Stox2, 4930448N21Rik, D030016E14Rik, Rwdd4a, LOC384819, LOC667422, Ing2, LOC546058
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182M14.bB6Ng01-182M14.g
ACCGA008585GA008586
length1,1011,106
definitionB6Ng01-182M14.b B6Ng01-182M14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,685,675 - 47,686,776)(47,787,956 - 47,789,076)
sequence
gaattccagtagcctcgtctgtcttctgagcaccagacatgcctttgata
cacaaacatgcacgcagacaaaacatccatacacatacaattctgaaaat
aataatttttttagattcacttattattatatcttaagtacactatagct
ttctccggatgcaccagaagaggatgtcagatctcattacagatggttgt
gagccaccatgtggttgctgggatttgaactcaggatcttcggaagagca
gtccagtcggtgctcttaaccactgagccatctctccagccctgaaaaat
aataattaaaaatagcatttctcttagggctggaaagatagcccagtagt
taaaagcactggctactctttcagagaaccaaggtttgattctcagcagc
tataaggtagttcaccaaccacatgtaactccagttccagggaatgcaat
tctgtcttctggcctttgtaggcaccaggctaacatatggtgcacagaca
tacatgaaggcaaaacttccaaatgcatttaaaaaaaaaaaacagtctct
caggactgaaaaagactcctaaaagtcaaaagtcaagcactttatatact
aaccttctctaaaagcataataaaaagcagctttttaagttcctcctcaa
acactagcttctcttagggtttctacggtggtaaaacatcatgaccaaaa
acaactcagggaggaaagggtgtatccagatatggcttgtagtgcatcat
gcaaggaagtcagggcaggaactgatgcaggaggaacatagaaatgctgc
cattggcttactcctcacggcttgctctcacaccatccgggaccaccccc
cacagtgagccaggcccatgcacatcaatcactaaagcaagggaaatggc
cccacaggctctcccaatctcaaattaaattctttccccaaatcacctct
ggcttgtgtccagctgacaaaacactagtgagcatagtagctaaaagtta
cagtttctagtcctagttcttttacactttcattctaagaaaaactcctc
atcctttgatctaatctatgactaatacaagcctgaaagccacacgctcg
g
gaattcagtaatgtagaaacacaactcctgtactatctttaaataaaagg
gaaacccccacaaaagcgggggcttggaaagacacatggctctgtgatta
agagcttgtgctactgttcttgcagaggacgcaggatccgttcccagctc
ccacactggggctcacatctgcctgttactccagtttcagagtacctgac
accctcttctgacctctaagggcatcagacaagcacacagtgcacataca
tagacccaagaaaaacatccatacatatgaaatcaagtaaatcctgagac
agaaatcttcctatcatagatgtttttatttgcgtgaacgtgtgtgactg
tgtcagtgagtgttatatgtgttcatgcctgtggaggccagaagagagca
tcgcatcccttacagcgagagttataggtcactgtgagccatctgatgcg
agtgccgggtcctttggaagagcagcaagtacttttaactgctgagccca
aaacacgaagttttttttttaataactgccccaccaatctcagtcgacat
tttggaagaggaggcagaaagaccataaaagccagagggatcagggaatt
tctttctaagatttatttatttattttatatatatatgagtgctctattt
aaaaaaaaaaaaagatcaaaagagggactcagatggttaagagccaccat
gtagttgctgggaattgaactggggtcctctggaaaagtagccagtgctc
ttaaccactgacccatctcttagcccattaaaaaaaaattgaaattacca
atgggaagggctgaaaggatcagatcagagttactggagactcgatgtct
ctgaatgtcccttgttttataaacctttgttttggaatgctgattctaaa
gtaaaatggagtcaaagtgagaaaagcattctagaagtgaatagcagtat
gatgcaaagccatatagactacaaatgactttccacagtgttctgcatcc
ttataaaaatagacaattgctctattggcatctctagaaatctgttcatt
gctgacttacagtgtggatgcaagaaatgaatggaatgtgaacctctaca
gttaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_47685675_47686776
seq2: B6Ng01-182M14.b_42_1142

seq1  GAATTCCAGTAGCCTCGTCTGTCTTCTGAGCACCAGACATGCCTTTGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTAGCCTCGTCTGTCTTCTGAGCACCAGACATGCCTTTGATA  50

seq1  CACAAACATGCACGCAGACAAAACATCCATACACATACAATTCTGAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACATGCACGCAGACAAAACATCCATACACATACAATTCTGAAAAT  100

seq1  AATAATTTTTTTAGATTCACTTATTATTATATCTTAAGTACACTATAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTTTTTAGATTCACTTATTATTATATCTTAAGTACACTATAGCT  150

seq1  TTCTCCGGATGCACCAGAAGAGGATGTCAGATCTCATTACAGATGGTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCGGATGCACCAGAAGAGGATGTCAGATCTCATTACAGATGGTTGT  200

seq1  GAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGATCTTCGGAAGAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGATCTTCGGAAGAGCA  250

seq1  GTCCAGTCGGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCTGAAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGTCGGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCTGAAAAAT  300

seq1  AATAATTAAAAATAGCATTTCTCTTAGGGCTGGAAAGATAGCCCAGTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTAAAAATAGCATTTCTCTTAGGGCTGGAAAGATAGCCCAGTAGT  350

seq1  TAAAAGCACTGGCTACTCTTTCAGAGAACCAAGGTTTGATTCTCAGCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCACTGGCTACTCTTTCAGAGAACCAAGGTTTGATTCTCAGCAGC  400

seq1  TATAAGGTAGTTCACCAACCACATGTAACTCCAGTTCCAGGGAATGCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGTAGTTCACCAACCACATGTAACTCCAGTTCCAGGGAATGCAAT  450

seq1  TCTGTCTTCTGGCCTTTGTAGGCACCAGGCTAACATATGGTGCACAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTCTGGCCTTTGTAGGCACCAGGCTAACATATGGTGCACAGACA  500

seq1  TACATGAAGGCAAAACTTCCAAATGCATTTAAAAAAAAAAAACAGTCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGAAGGCAAAACTTCCAAATGCATTTAAAAAAAAAAAACAGTCTCT  550

seq1  CAGGACTGAAAAAGACTCCTAAAAGTCAAAAGTCAAGCACTTTATATACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTGAAAAAGACTCCTAAAAGTCAAAAGTCAAGCACTTTATATACT  600

seq1  AACCTTCTCTAAAAGCATAATAAAAAGCAGCTTTTTAAGTTCCTCCTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTCTCTAAAAGCATAATAAAAAGCAGCTTTTTAAGTTCCTCCTCAA  650

seq1  ACACTAGCTTCTCTTAGGGTTTCTACGGTGGTAAAACATCATGACCAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAGCTTCTCTTAGGGTTTCTACGGTGGTAAAACATCATGACCAAAA  700

seq1  ACAACTCAGGGAGGAAAGGGTGTATCCAGATATGGCTTGTAGTGCATCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTCAGGGAGGAAAGGGTGTATCCAGATATGGCTTGTAGTGCATCAT  750

seq1  GCAAGGAAGTCAGGGCAGGAACTGATGCAGGAGGAACATAGAAATGCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGAAGTCAGGGCAGGAACTGATGCAGGAGGAACATAGAAATGCTGC  800

seq1  CATTGGCTTACTCCTCACGGCTTGCTCTCACACCATCCGGGACCACCCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGCTTACTCCTCACGGCTTGCTCTCACACCATCCGGGACCACCCCC  850

seq1  CACAGTGAGCCAGGCCCATGCACATCAATCACTAAAGCAA-GGAAATGG-  898
      |||||||||||||||||||||||||||||||||||||||| |||||||| 
seq2  CACAGTGAGCCAGGCCCATGCACATCAATCACTAAAGCAAGGGAAATGGC  900

seq1  CCCACAGGCTCTCCCAAATCTCAAATTAAATTCTTTCCCCAAATCA-CTC  947
      ||||||||||||||| |||||||||||||||||||||||||||||| |||
seq2  CCCACAGGCTCTCCC-AATCTCAAATTAAATTCTTTCCCCAAATCACCTC  949

seq1  TGGCTTGTGTCCAGCTGACAAAACACTAGTGAGCATAGTAGCTAAAAGTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGTGTCCAGCTGACAAAACACTAGTGAGCATAGTAGCTAAAAGTT  999

seq1  ACAGTTTCTAGTTCTAGTTCTTTTACAACTTTCATTCTTAGAAAAACT-C  1046
      |||||||||||| ||||||||||||| ||||||||||| ||||||||| |
seq2  ACAGTTTCTAGTCCTAGTTCTTTTAC-ACTTTCATTCTAAGAAAAACTCC  1048

seq1  TCATTCCTTTTGAATCTAAATCTATGACTAATAC-AGCCTGAAAG-CACA  1094
      ||| ||||||   |||| |||||||||||||||| |||||||||| ||||
seq2  TCA-TCCTTT--GATCT-AATCTATGACTAATACAAGCCTGAAAGCCACA  1094

seq1  CGGCTCGG  1102
      | ||||||
seq2  C-GCTCGG  1101

seq1: chr8_47787956_47789076
seq2: B6Ng01-182M14.g_62_1167 (reverse)

seq1  ATTAAAATGTAGAGG-TCACATTCCATTCTATTCTCTGCATCCCAAACAC  49
      ||| || |||||||| |||||||||||||  |||| |||||||   ||||
seq2  ATT-AACTGTAGAGGTTCACATTCCATTCATTTCT-TGCATCC---ACAC  45

seq1  TTGTTAGCTCAGGCCAATG-ACAGAATTTCTAAGAGATGCCAAATAGAGC  98
       ||| || ||||  ||||| |||| |||||| ||||||||| ||||||||
seq2  -TGTAAG-TCAG--CAATGAACAG-ATTTCT-AGAGATGCC-AATAGAGC  88

seq1  ATTTGTCTATTTTTATAAGGGAATGCAGAACACTGTGGAAAAGTCATTTT  148
      | ||||||||||||||||||  |||||||||||||||| |||||||||| 
seq2  AATTGTCTATTTTTATAAGG--ATGCAGAACACTGTGG-AAAGTCATTT-  134

seq1  GTTAGTCTATATGGCTTTTGCAATCATACTGCTATTCACTTCTAGAATGC  198
        ||||||||||||| ||||| ||||||||||||||||||||||||||||
seq2  -GTAGTCTATATGGC-TTTGC-ATCATACTGCTATTCACTTCTAGAATGC  181

seq1  TTTTCTCACTTTGACTCCATTTTACTTTAGAATCAGCATTCCAAAAC-AA  247
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTTCTCACTTTGACTCCATTTTACTTTAGAATCAGCATTCCAAAACAAA  231

seq1  GGTTTATAAAACAAGGGACATTCAGAGACATCGAGTCTCCAGTAACTCTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTATAAAACAAGGGACATTCAGAGACATCGAGTCTCCAGTAACTCTG  281

seq1  ATCTGATCCTTTCAGCCCTTCCCATTGGTAATTTCAATTTTTTTTTAATG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATCCTTTCAGCCCTTCCCATTGGTAATTTCAATTTTTTTTTAATG  331

seq1  GGCTAAGAGATGGGTCAGTGGTTAAGAGCACTGGCTACTTTTCCAGAGGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAGAGATGGGTCAGTGGTTAAGAGCACTGGCTACTTTTCCAGAGGA  381

seq1  CCCCAGTTCAATTCCCAGCAACTACATGGTGGCTCTTAACCATCTGAGTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTTCAATTCCCAGCAACTACATGGTGGCTCTTAACCATCTGAGTC  431

seq1  CCTCTTTTGAT-TTTTTTTTTTTTTAAATAGAGCACTCATATATATATAA  496
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTTGATCTTTTTTTTTTTTTAAATAGAGCACTCATATATATATAA  481

seq1  AATAAATAAATAAATCTTAGAAAGAAATTCCCTGATCCCTCTGGCTTTTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAATAAATCTTAGAAAGAAATTCCCTGATCCCTCTGGCTTTTA  531

seq1  TGGTCTTTCTGCCTCCTCTTCCAAAATGTCGACTGAGATTGGTGGGGCAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTTCTGCCTCCTCTTCCAAAATGTCGACTGAGATTGGTGGGGCAG  581

seq1  TTATTAAAAAAAAAACTTCGTGTTTTGGGCTCAGCAGTTAAAAGTACTTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAAAAAAAAACTTCGTGTTTTGGGCTCAGCAGTTAAAAGTACTTG  631

seq1  CTGCTCTTCCAAAGGACCCGGCACTCGCATCAGATGGCTCACAGTGACCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTTCCAAAGGACCCGGCACTCGCATCAGATGGCTCACAGTGACCT  681

seq1  ATAACTCTCGCTGTAAGGGATGCGATGCTCTCTTCTGGCCTCCACAGGCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTCTCGCTGTAAGGGATGCGATGCTCTCTTCTGGCCTCCACAGGCA  731

seq1  TGAACACATATAACACTCACTGACACAGTCACACACGTTCACGCAAATAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACATATAACACTCACTGACACAGTCACACACGTTCACGCAAATAA  781

seq1  AAACATCTATGATAGGAAGATTTCTGTCTCAGGATTTACTTGATTTCATA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCTATGATAGGAAGATTTCTGTCTCAGGATTTACTTGATTTCATA  831

seq1  TGTATGGATGTTTTTCTTGGGTCTATGTATGTGCACTGTGTGCTTGTCTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGATGTTTTTCTTGGGTCTATGTATGTGCACTGTGTGCTTGTCTG  881

seq1  ATGCCCTTAGAGGTCAGAAGAGGGTGTCAGGTACTCTGAAACTGGAGTAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTTAGAGGTCAGAAGAGGGTGTCAGGTACTCTGAAACTGGAGTAA  931

seq1  CAGGCAGATGTGAGCCCCAGTGTGGGAGCTGGGAACGGATCCTGCGTCCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGATGTGAGCCCCAGTGTGGGAGCTGGGAACGGATCCTGCGTCCT  981

seq1  CTGCAAGAACAGTAGCACAAGCTCTTAATCACAGAGCCATGTGTCTTTCC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGAACAGTAGCACAAGCTCTTAATCACAGAGCCATGTGTCTTTCC  1031

seq1  AAGCCCCCGCTTTTGTGGGGGTTTCCCTTTTATTTAAAGATAGTACAGGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCCGCTTTTGTGGGGGTTTCCCTTTTATTTAAAGATAGTACAGGA  1081

seq1  GTTGTGTTTCTACATTACTGAATTC  1121
      |||||||||||||||||||||||||
seq2  GTTGTGTTTCTACATTACTGAATTC  1106