BAC Information

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BAC

Clone NameB6Ng01-182N15
Chromosome8 (Build37)
Map Location 80,291,626 - 80,493,029
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039211, LOC384847, Nr3c2, Arhgap10, LOC100039235, AI931714, Tmem34, Ednra
Downstream geneEG622803, Ttc29, Pou4f2, LOC100039422, Rbmxrt, Slc10a7, LOC100039466, Lsm6, EG666340
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182N15.bB6Ng01-182N15.g
ACCGA008630GA008631
length910848
definitionB6Ng01-182N15.b B6Ng01-182N15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,291,626 - 80,292,528)(80,492,186 - 80,493,029)
sequence
gaattcaatataatatttgtgcaaaacacaaatgaattgtatatacagtt
tgtgacagttagttttaattgtcaacttgacataacccaggatcacatgg
gaaaggaatctcagtgagggatggtctacatcagattggcctgtgggcac
atctaagtgggattgtcttgattgcctgtgtttatgtgaaaatccaggcc
agcataaatagcactgctcccgagacaagaggtcatgcatatggagccaa
gcacaggcaagcaagcaagcaagcaagcaagcaagcaagcaagcaagcaa
gcaagcattcatctctcttcttgaccatggttgcaatgtgatagactata
acctggaagcataagccagggagatcctttttcccctactttaatttttg
tcaggatatgcttatcacagcaacagaaattgaactatattagcatttat
tcctgttaatcctgttgtctacaaaaaaaaaaaaaaacccagtaagaata
agttatcaaatactggatagtgcattttcaggaaatacagggttgtgttc
cttttagtctctgatcacttgttcgccaacagactaattcataaccttga
tgtttctgtctttatgttcagcggtactacttagtatgtgttgttgattc
attggcatgggactcacggtcaacagcattgtagctcatgccttggtgaa
ggctgcctgacacacataccctttcactggcacaccacagcttccttgta
cttagaaatatgaaatggtactttcagcaccagctcaggggtcattttac
atgtcagaatccccacacaaaaagtgcaaaaataaaaaaaaaaaactgtg
gtgtcgttagagtgtgaaaagaacacttggttcatggtgtggaaactggg
attgcgaagt
gaattctttttttctcatcagttatttaaaactatacactttactgtttt
tgtttttgttttgtatttttattgattatttgcaaatttcacatcatgaa
ccctgatcatactcacctctcagccctcccagctctaccccctttgtgac
actccctcccccccaaaagaagaaaatgtccaaattgtgttgctcatgta
ctttctagaacttgtcaaactcccagtggccagatccccaccagaaccca
tcagttgtgagtagctacacttcataattctctttgatggctttctgtct
aggctattacttggcgggtggtggggtgcaaaactatataacttaatctt
atacttttaattggtatctttctgttattgatttctagtttcagtgtaga
aattaagctggaaaatgtgctcagtaaaatttcttggaaatgctttgtaa
aagttcagtcctctgaaactcactgagttgtcttactggaccgggatgtg
gtttgcttgaacgaagacgcattgtcagttaggatgaggtgactgatgtg
tttactgaggcgtctgtatttttaattactttctctgtagttgttacatg
aattactaagaatatcaacattgtcaagtacaactggactttctgggttc
tgtcctgcggtcagttcatactaacaagaacaaagggttgcacctacaac
tgcaaaggtattgtaatactacccaacatacacgaattataatacaatct
gtactggttaaaatatgcttattcttgagcctaaacaaatgtttagatat
ttaaaacattacaaatgtatcctattttagatagacctcatttaatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_80291626_80292528
seq2: B6Ng01-182N15.b_42_951

seq1  GAATTCAATATAATATTTGTGCAAAACACAAATGAATTGTATATACAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATAATATTTGTGCAAAACACAAATGAATTGTATATACAGTT  50

seq1  TGTGACAGTTAGTTTTAATTGTCAACTTGACATAACCCAGGATCACATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAGTTAGTTTTAATTGTCAACTTGACATAACCCAGGATCACATGG  100

seq1  GAAAGGAATCTCAGTGAGGGATGGTCTACATCAGATTGGCCTGTGGGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAATCTCAGTGAGGGATGGTCTACATCAGATTGGCCTGTGGGCAC  150

seq1  ATCTAAGTGGGATTGTCTTGATTGCCTGTGTTTATGTGAAAATCCAGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGTGGGATTGTCTTGATTGCCTGTGTTTATGTGAAAATCCAGGCC  200

seq1  AGCATAAATAGCACTGCTCCCGAGACAAGAGGTCATGCATATGGAGCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAAATAGCACTGCTCCCGAGACAAGAGGTCATGCATATGGAGCCAA  250

seq1  GCACAGGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAA  300

seq1  GCAAGCATTCATCTCTCTTCTTGACCATGGTTGCAATGTGATAGACTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCATTCATCTCTCTTCTTGACCATGGTTGCAATGTGATAGACTATA  350

seq1  ACCTGGAAGCATAAGCCAGGGAGATCCTTTTTCCCCTACTTTAATTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGAAGCATAAGCCAGGGAGATCCTTTTTCCCCTACTTTAATTTTTG  400

seq1  TCAGGATATGCTTATCACAGCAACAGAAATTGAACTATATTAGCATTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATATGCTTATCACAGCAACAGAAATTGAACTATATTAGCATTTAT  450

seq1  TCCTGTTAATCCTGTTGTCTACAAAAAAAAAAAAAAACCCAGTAAGAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTAATCCTGTTGTCTACAAAAAAAAAAAAAAACCCAGTAAGAATA  500

seq1  AGTTATCAAATACTGGATAGTGCATTTTCAGGAAATACAGGGTTGTGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATCAAATACTGGATAGTGCATTTTCAGGAAATACAGGGTTGTGTTC  550

seq1  CTTTTAGTCTCTGATCACTTGTTCGCCAACAGACTAATTCATAACCTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGTCTCTGATCACTTGTTCGCCAACAGACTAATTCATAACCTTGA  600

seq1  TGTTTCTGTCTTTATGTTCAGCGGTACTACTTAGTATGTGTTGTTGATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTGTCTTTATGTTCAGCGGTACTACTTAGTATGTGTTGTTGATTC  650

seq1  ATTGGCATGGGACTCACGGTCAACAGCATTGTAGCTCATGCCTTGGTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCATGGGACTCACGGTCAACAGCATTGTAGCTCATGCCTTGGTGAA  700

seq1  GGCTGCCTGACACACATACCC-TTCACTGGCACACCACAGCTTCCTTGTA  749
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGCTGCCTGACACACATACCCTTTCACTGGCACACCACAGCTTCCTTGTA  750

seq1  CTTAGAAATATGAAATGGTAC-TTCAGCACCAGCTCAGGGGTCATTTTAC  798
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTTAGAAATATGAAATGGTACTTTCAGCACCAGCTCAGGGGTCATTTTAC  800

seq1  ATGTCAGAATCCCCACAC-AAAAGTGCAAAAAT-AAAAAAAAAAACTGTG  846
      |||||||||||||||||| |||||||||||||| ||||||||||||||||
seq2  ATGTCAGAATCCCCACACAAAAAGTGCAAAAATAAAAAAAAAAAACTGTG  850

seq1  GTGTCGTTAGAGTGTG-AAAGAACACTT-GTTCATGGTGTGGAAACT-GG  893
      |||||||||||||||| ||||||||||| |||||||||||||||||| ||
seq2  GTGTCGTTAGAGTGTGAAAAGAACACTTGGTTCATGGTGTGGAAACTGGG  900

seq1  ATTGTGAAGT  903
      |||| |||||
seq2  ATTGCGAAGT  910

seq1: chr8_80492186_80493029
seq2: B6Ng01-182N15.g_67_914 (reverse)

seq1  TGATT-AATGA-GTCTATCTTAAATA-GATACTTTTGTATTGTTTTAAAT  47
      ||||| ||||| |||||||| ||||| ||||| |||||| ||||||||||
seq2  TGATTAAATGAGGTCTATCTAAAATAGGATACATTTGTAATGTTTTAAAT  50

seq1  ATCTAAACCTTTGTTTAGGCTCAAGAATAAGCATATTTTAACCAGTACAG  97
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAACATTTGTTTAGGCTCAAGAATAAGCATATTTTAACCAGTACAG  100

seq1  ATTGTATTATAATTCGTGTATGTTGGGTAGTATTACAATACCTTTGCAGT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATTATAATTCGTGTATGTTGGGTAGTATTACAATACCTTTGCAGT  150

seq1  TGTAGGTGCAACCCTTTGTTCTTGTTAGTATGAACTGACCGCAGGACAGA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTGCAACCCTTTGTTCTTGTTAGTATGAACTGACCGCAGGACAGA  200

seq1  ACCCAGAAAGTCCAGTTGTACTTGACAATGTTGATATTCTTAGTAATTCA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGAAAGTCCAGTTGTACTTGACAATGTTGATATTCTTAGTAATTCA  250

seq1  TGTAACAACTACAGAGAAAGTAATTAAAAATACAGACGCCTCAGT-AACA  296
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGTAACAACTACAGAGAAAGTAATTAAAAATACAGACGCCTCAGTAAACA  300

seq1  CATCAGTCACCTCATCCTAACTGACAATGCGTCTTCGTTCAAGCAAACCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTCACCTCATCCTAACTGACAATGCGTCTTCGTTCAAGCAAACCA  350

seq1  CATCCCGGTCCAGTAAGACAACTCAGTGAGTTTCAGAGGACTGAACTTTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCGGTCCAGTAAGACAACTCAGTGAGTTTCAGAGGACTGAACTTTT  400

seq1  ACAAAGCATTTCCAAGAAATTTTACTGAGCACATTTTCCAGCTTAATTTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCATTTCCAAGAAATTTTACTGAGCACATTTTCCAGCTTAATTTC  450

seq1  TACACTGAAACTAGAAATCAATAACAGAAAGATACCAATTAAAAGTATAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGAAACTAGAAATCAATAACAGAAAGATACCAATTAAAAGTATAA  500

seq1  GATTAAGTTATATAGTTTTGCACCCCACCACCCGCCAAGTAATAGCCTAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAGTTATATAGTTTTGCACCCCACCACCCGCCAAGTAATAGCCTAG  550

seq1  ACAGAAAGCCATCAAAGAGAATTATGAAGTGTAGCTACTCACAACTGATG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAGCCATCAAAGAGAATTATGAAGTGTAGCTACTCACAACTGATG  600

seq1  GGTTCTGGTGGGGATCTGGCCACTGGGAGTTTGACAAGTTCTAGAAAGTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGGTGGGGATCTGGCCACTGGGAGTTTGACAAGTTCTAGAAAGTA  650

seq1  CATGAGCAACACAATTTGGACATTTTCTTCTTTTGGGGGGGAGGGAGTGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGCAACACAATTTGGACATTTTCTTCTTTTGGGGGGGAGGGAGTGT  700

seq1  CACAAAGGGGGTAGAGCTGGGAGGGCTGAGAGGTGAGTATGATCAGGGTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGGGGGTAGAGCTGGGAGGGCTGAGAGGTGAGTATGATCAGGGTT  750

seq1  CATGATGTGAAATTTGCAAATAATCAATAAAAATACAAAACAAAAACAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGTGAAATTTGCAAATAATCAATAAAAATACAAAACAAAAACAAA  800

seq1  AACAGTAAAGTGTATAGTTTTAAATAACTGATGAGAAAAAAAGAATTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTAAAGTGTATAGTTTTAAATAACTGATGAGAAAAAAAGAATTC  848