BAC Information

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BAC

Clone NameB6Ng01-183N01
Chromosome8 (Build37)
Map Location 79,745,764 - 79,852,861
singlet/doubletdoublet
Overlap geneNr3c2, Arhgap10
Upstream geneLOC100039185, EG631594, LOC666226, LOC100039211, LOC384847
Downstream geneLOC100039235, AI931714, Tmem34, Ednra, EG622803, Ttc29
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183N01.bB6Ng01-183N01.g
ACCGA009347GA009348
length1,091502
definitionB6Ng01-183N01.b B6Ng01-183N01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,745,764 - 79,746,834)(79,852,355 - 79,852,861)
sequence
gaattctagaggaccttttctagccttcatgtttattaggcctgggaaat
acccacagtgttttcatttgagtaaatccttgaatcaacattgtggtgtt
ttcctcaaaggaactaattgctgcaccacatactggctctgtccttccag
cctagttctggtcacttagtggaaaagagaacatttttcttgattctcaa
acaagtaagaattgattacatatacatggaaattgtgcgtccaaagctca
cattgtttgctggctcccaggacacatgtccacagctcccaggacacaca
cagattcccacagctcccaggacacacacacatgtccacagctcccagga
cacacacacacacatgtccacagctcccaggacatacacacacacacaca
cacacacacacacacacacacacatgtccactgctcccaggacacacaca
cacatgtccacagctcccaggactgacacatacatatgcccacagctccc
aagccacatctccacagttcctaggacacatatccacagtttctcggaca
catggatttcttccacatggtacacatatgtgtgggcagaactgtgccaa
ggtgggggaaaagaacattctccaaaacacacactgacagttgagtgctt
ggccaacagcttttatgactcagaacccctctgaacatcaatctttcccc
aaaacgatgtttcaaggagcacagctgtgggaagaccccaggaagtaggg
tgtgttgtgcattgctgatgtttgggtatgggatgtaaaaactaggtagg
ttttttattctattagagaaaatggacattcatttttaaattattactaa
gagaggtaagacatctcctgtggtataagaagcatgtctaatgaacttta
tttgtttcattttctaggcattcttcagaagttaaggagtgtttatggta
tggccttgtggaattttagaaatacaaaagattgtgagccactatcctct
tgaagccaaaatttgccctttttttctatttaaggtatttgtagagttac
agtctttatttttggttataccaatgtcaccaaaattgtga
atcagtcaaaagagaatctgcctcaggtaactggcttttaacatgtggcc
tcttggagagaggaaaacaaggattccactgttcaggccttacgctgtgg
tggtctgtcacagcagccttgtccaaacaaagatgacactccttccaggt
gacagaaagacaaaactagtgtagagaagaaaacggacatcatacatggg
gcggcatggaaggagatgtcgcctgtgaggccgttagagcagcagctgtt
gaccaagctacccatttatggtgttagtataatggaaaccaaccagccag
agtgggcggtatgggcggtgcagatgtgctctggtaggaggtaggtgggg
ctgtgggttaagaatctattttataaaaagtcctggtctgaagaagagga
gagaaacttattgacattttattttttgctacatttaattaaatagttag
gaagactggagttccaaaatgaaatagttcatgggatggtttgtaaggaa
gg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_79745764_79746834
seq2: B6Ng01-183N01.b_48_1138

seq1  GAATTCTAGAGGACCTTTTCTAGCCTTCATGTTTATTAGGCCTGGGAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAGGACCTTTTCTAGCCTTCATGTTTATTAGGCCTGGGAAAT  50

seq1  ACCCACAGTGTTTTCATTTGAGTAAATCCTTGAATCAACATTGTGGTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACAGTGTTTTCATTTGAGTAAATCCTTGAATCAACATTGTGGTGTT  100

seq1  TTCCTCAAAGGAACTAATTGCTGCACCACATACTGGCTCTGTCCTTCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAAAGGAACTAATTGCTGCACCACATACTGGCTCTGTCCTTCCAG  150

seq1  CCTAGTTCTGGTCACTTAGTGGAAAAGAGAACATTTTTCTTGATTCTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTTCTGGTCACTTAGTGGAAAAGAGAACATTTTTCTTGATTCTCAA  200

seq1  ACAAGTAAGAATTGATTACATATACATGGAAATTGTGCGTCCAAAGCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTAAGAATTGATTACATATACATGGAAATTGTGCGTCCAAAGCTCA  250

seq1  CATTGTTTGCTGGCTCCCAGGACACATGTCCACAGCTCCCAGGACACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTTGCTGGCTCCCAGGACACATGTCCACAGCTCCCAGGACACACA  300

seq1  CAGATTCCCACAGCTCCCAGGACACACACACATGTCCACAGCTCCCAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCCCACAGCTCCCAGGACACACACACATGTCCACAGCTCCCAGGA  350

seq1  CACACACACACACATGTCCACAGCTCCCAGGACATACACACACACACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACATGTCCACAGCTCCCAGGACATACACACACACACACA  400

seq1  CACACACACACACACACACACACATGTCCACTGCTCCCAGGACACACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACATGTCCACTGCTCCCAGGACACACACA  450

seq1  CACATGTCCACAGCTCCCAGGACTGACACATACATATGCCCACAGCTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTCCACAGCTCCCAGGACTGACACATACATATGCCCACAGCTCCC  500

seq1  AAGCCACATCTCCACAGTTCCTAGGACACATATCCACAGTTTCTCGGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACATCTCCACAGTTCCTAGGACACATATCCACAGTTTCTCGGACA  550

seq1  CATGGATTTCTTCCACATGGTACACATATGTGTGGGCAGAACTGTGCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATTTCTTCCACATGGTACACATATGTGTGGGCAGAACTGTGCCAA  600

seq1  GGTGGGGGAAAAGAACATTCTCCAAAACACACACTGACAGTTGAGTGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGGAAAAGAACATTCTCCAAAACACACACTGACAGTTGAGTGCTT  650

seq1  GGCCAACAGCTTTTATGACTCAGAACCCCTCTGAACATCAATCTTTCCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAACAGCTTTTATGACTCAGAACCCCTCTGAACATCAATCTTTCCCC  700

seq1  AAAACGATGTTTCAAGGAGCACAGCTGTGGGAAGACCCCAGGAAGTAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGATGTTTCAAGGAGCACAGCTGTGGGAAGACCCCAGGAAGTAGGG  750

seq1  TGTGTTGTGCATTGCTGATGTTTGGGTATGGGATGTAAAAACTAGGTAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGTGCATTGCTGATGTTTGGGTATGGGATGTAAAAACTAGGTAGG  800

seq1  -TTTTTATTCTATTAGAGAAAATGGACATTCATTTTTAAATTATTACTAA  849
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATTCTATTAGAGAAAATGGACATTCATTTTTAAATTATTACTAA  850

seq1  GAGAGGTAAGACATCTCCTGTGGTATAAGAAGCATGTCTAATGAAC-TTA  898
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAGAGGTAAGACATCTCCTGTGGTATAAGAAGCATGTCTAATGAACTTTA  900

seq1  TT--GTTCA-TTTCTAGGCATTC-TCAGAAGTTAAGGAGTGTTTATGGTA  944
      ||   |||| ||||||||||||| ||||||||||||||||||||||||||
seq2  TTTGTTTCATTTTCTAGGCATTCTTCAGAAGTTAAGGAGTGTTTATGGTA  950

seq1  TGGCC-TGTGGTATTTAGAAAATACAAAAGATTGTGAG-CACTAT-CTCT  991
      ||||| ||||| ||||   ||||||||||||||||||| |||||| ||||
seq2  TGGCCTTGTGGAATTTTAGAAATACAAAAGATTGTGAGCCACTATCCTCT  1000

seq1  TGAGGC--AAAATTGCCC---TTTTCTATT--AAGTATTGTAAGAGTTAC  1034
      ||| ||  ||| ||||||   |||||||||  | |||||   ||||||||
seq2  TGAAGCCAAAATTTGCCCTTTTTTTCTATTTAAGGTATTTGTAGAGTTAC  1050

seq1  AGT-TTTATTTT--GGTATACAAATGTCA-CAAAAATGTGA  1071
      ||| ||||||||  | ||||| ||||||| ||||| |||||
seq2  AGTCTTTATTTTTGGTTATACCAATGTCACCAAAATTGTGA  1091

seq1: chr8_79852355_79852861
seq2: B6Ng01-183N01.g_69_576 (reverse)

seq1  CCTTCCTTACAAACCATCCCTTTAACTATTTCATTTCTGAACTCCTGTCT  50
      |||||||||||||||||||| | |||||||||||||  ||||||| ||||
seq2  CCTTCCTTACAAACCATCCCATGAACTATTTCATTTTGGAACTCCAGTCT  50

seq1  TCCTGACTATTTAGTTAAATGTAGTTAAATGT-AAATGTCAGTAAGTTTC  99
      |||| |||||||| ||||||||||  |||  | |||||||| ||||||||
seq2  TCCTAACTATTTAATTAAATGTAGCAAAAAATAAAATGTCAATAAGTTTC  100

seq1  TCTCCTCTTCTTCGGACCAGTACTTTTTCTAAAATAGATTCTTAACCCAC  149
      ||||||||||||| |||||| ||||||| |||||||||||||||||||||
seq2  TCTCCTCTTCTTCAGACCAGGACTTTTTATAAAATAGATTCTTAACCCAC  150

seq1  AGCCCCACCTACCTCCTACCAGAGCACATCTGCACCGCCCATACCGCCCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCACCTACCTCCTACCAGAGCACATCTGCACCGCCCATACCGCCCA  200

seq1  CTCTGGCTGGTTGGTTTCCATTATACTAACACCATAAATGGGTAGCTTGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCTGGTTGGTTTCCATTATACTAACACCATAAATGGGTAGCTTGG  250

seq1  TCAACAGCTGCTGCTCTAACGGCCTCACAGGCGACATCTCCTTCCATGCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGCTGCTGCTCTAACGGCCTCACAGGCGACATCTCCTTCCATGCC  300

seq1  GCCCCATGTATGATGTCCGTTTTCTTCTCTACACTAGTTTTGTCTTTCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCATGTATGATGTCCGTTTTCTTCTCTACACTAGTTTTGTCTTTCTG  350

seq1  TCACCTGGAAGGAGTGTCATCTTTGTTTGGACAAGGCTGCTGTGACAGAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGGAAGGAGTGTCATCTTTGTTTGGACAAGGCTGCTGTGACAGAC  400

seq1  CACCACAGCGTAAGGCCTGAACAGTGGAATCCTTGTTTTCCTCTCTCCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACAGCGTAAGGCCTGAACAGTGGAATCCTTGTTTTCCTCTCTCCAA  450

seq1  GAGGCCACATGTTAAAAGCCAGTTACCTGAGGCAGATTCTCTTTTGACTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCACATGTTAAAAGCCAGTTACCTGAGGCAGATTCTCTTTTGACTG  500

seq1  ATGAATTC  507
      ||||||||
seq2  ATGAATTC  508