BAC Information

Click to search

BAC

Clone NameB6Ng01-184F18
Chromosome8 (Build37)
Map Location 44,063,922 - 44,262,658
singlet/doubletdoublet
Overlap geneTriml1, LOC622082
Upstream geneZfp353, EG620772, LOC628212
Downstream geneEG622117, LOC100039417, Zfp42, Adam26b, Adam26a, EG384813, Adam34, EG384814, LOC100039472, LOC547011, LOC622263
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184F18.bB6Ng01-184F18.g
ACCGA009757GA009758
length1,0891,183
definitionB6Ng01-184F18.b B6Ng01-184F18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,261,569 - 44,262,658)(44,063,922 - 44,065,093)
sequence
gaattctaaagaagtaggcactaatgccagtaaaggaatggacttgttag
caaggtcagagcagacaaagggcaaaagctgccttcctccaggcccttat
gtaggcttccagcagaaggtatggatcagttaatttgagatgtagtcaag
ttgacaaccaagaacagccatgacagttgcctttgaagtcagtgggtgct
catttatacttgccacatttattttgcttatactttgtttgtttgcttat
ttgttttgaggcaggtttcctgtggtcttgaatttgaaggaggtctcata
tatcccaggctggccttgagtttgcaatgctgctgaggctggtctggaac
tcctgatccttctgattggatcttccaagtgctgcagttaatgcctaggg
ccagctggttactgcagcaggcctcaggaccccgaagcacacacgtggaa
agacaactgaccgcattgtcagaagggattgtcaaaactcctggatttgg
agaaaacaaagtttcccgaaactgcttaactaactggtattatatcagca
acagtcagtttgagtagatggtttttcttgaaaaaaaaaataaggttttt
ctcattttgttgaacaaaatctgggtgctagtctcagagaattgaatgta
gctggggtgatttatgaaggtcagggttactgaaaatggaaaattcagta
ttgttctttaaactgtcctcattgcatgaaaaaaaataagcaaaggtggt
caggagacaaacgacaacaaaatcagagttaggtactgtcttctctccaa
tcacaacaaggtaaatctaacatgatattagcctgcgtattattctgaag
tagcgtgaacaaaggcttttctttaacatccttaattccttgtctgaatt
tcacactgctcagcttaggggggagggggctctctctgcccaagtgacca
tgaactctcactcgagtggagaaaggatttttttttttttgtatctgtaa
atggtaaggtggaggtgtagaacggggggacacggcaatatgatttattc
atgctagtagctgttcggaacttgtgataaaagtcaaag

gaattctctgtttaaccctgaaggttgatgtgttcatcattcaaggagta
gcttgatttctaacacactgcaggcttcgaggctgaagaaaatactgaga
taaaacattgccctaaaccacagttactttggattccaggaagatccaac
ctggaagaagagaccaacatgaatatgaaggtaatcacccataaggaata
gactgcacatttgaacagaagtgattacccactttgtctctttgtccctt
ccaaaaacaaggtctttgttggcctaaataatagtcccagaactaaaata
atactcaatcagatgatatcatgattagaactattttgaattatccagac
atttgccttgtttatatctgaaatattttcctcttttttttttcattata
atgggttgcttaaagcctttcttccccctgcaagtttgttactatattat
agatgctgccctggtgaagaggattataaatccttcaatccttcctatcc
tacctacttccttcccaaaactgctaaatttctagcataaggcaaccaca
aggtagggtgggacaacaggaataatttttcctcaatcaccaccttatag
ctatttagcattttcactaaactgctaaactcagacactttttccttcta
aattctgagactgcattccaacataagctggagataacccccatctgcaa
taaggaatttcctttgtccatcggattctgctgaatctcctattccagct
cccactgtttgagtggcaggcagtgctaaaggctatttgacccgaaatct
tttttcagtgtattctctactaaacctggaaagaatctttattatttaaa
acatctgtcctgtacttttgagcaagttctccccactgcccttcccctct
atcaccctacctcgaattaactccctttgttctcctagacgagttcactt
ctactttccatgtcaactgatgtatataatttatgtgtgtgcataaaacc
ctgggacacatgaaggaaggaaagcatggagatatttggggaggactgac
ttcgttaacttactatgattgtcctcagtgtctctaccttttctgcagag
agaacacagcttcattcgtccaggtcctggaaaatattctttcatgaatc
caaaccgacatgcctttatggccattcgttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_44261569_44262658
seq2: B6Ng01-184F18.b_46_1134 (reverse)

seq1  CTTTGACTTTTATCAC-AGTCCCG-ACAGCTAACTAGCACTGATAAAATC  48
      |||||||||||||||| ||| ||| |||||| ||||||| |||  |||||
seq2  CTTTGACTTTTATCACAAGTTCCGAACAGCT-ACTAGCA-TGAATAAATC  48

seq1  ATTATTGCCGTGT-CCCCCTTTCTA-ACACTCACCTTACCATTTTAACAA  96
      | ||||||||||| ||||| ||||| ||   |||||||||||||  ||| 
seq2  A-TATTGCCGTGTCCCCCCGTTCTACACCTCCACCTTACCATTT--ACAG  95

seq1  GAATACAAAAAAAAAAATCCTTTCT-CACTCGAGTGAGAGTTTCATGGTC  145
        | | ||||||||||||||||||| |||||||||||||| |||||||||
seq2  ATACAAAAAAAAAAAAATCCTTTCTCCACTCGAGTGAGAG-TTCATGGTC  144

seq1  ACTTGGGCAGAGAGAGCCCCCTCCCCCCTAAGCTGAGCAGTGTGAAATTC  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGCAGAGAGAGCCCCCTCCCCCCTAAGCTGAGCAGTGTGAAATTC  194

seq1  AGACAAGGAATTAAGGATGTTAAAGAAAAGCCTTTGTTCACGCTACTTCA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGGAATTAAGGATGTTAAAGAAAAGCCTTTGTTCACGCTACTTCA  244

seq1  GAATAATACGCAGGCTAATATCATGTTAGATTTACCTTGTTGTGATTGGA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATACGCAGGCTAATATCATGTTAGATTTACCTTGTTGTGATTGGA  294

seq1  GAGAAGACAGTACCTAACTCTGATTTTGTTGTCGTTTGTCTCCTGACCAC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGACAGTACCTAACTCTGATTTTGTTGTCGTTTGTCTCCTGACCAC  344

seq1  CTTTGCTTATTTTTTTTCATGCAATGAGGACAGTTTAAAGAACAATACTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTTATTTTTTTTCATGCAATGAGGACAGTTTAAAGAACAATACTG  394

seq1  AATTTTCCATTTTCAGTAACCCTGACCTTCATAAATCACCCCAGCTACAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCCATTTTCAGTAACCCTGACCTTCATAAATCACCCCAGCTACAT  444

seq1  TCAATTCTCTGAGACTAGCACCCAGATTTTGTTCAACAAAATGAGAAAAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCTCTGAGACTAGCACCCAGATTTTGTTCAACAAAATGAGAAAAA  494

seq1  CCTTATTTTTTTTTTCAAGAAAAACCATCTACTCAAACTGACTGTTGCTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTTTTTTTTTCAAGAAAAACCATCTACTCAAACTGACTGTTGCTG  544

seq1  ATATAATACCAGTTAGTTAAGCAGTTTCGGGAAACTTTGTTTTCTCCAAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATACCAGTTAGTTAAGCAGTTTCGGGAAACTTTGTTTTCTCCAAA  594

seq1  TCCAGGAGTTTTGACAATCCCTTCTGACAATGCGGTCAGTTGTCTTTCCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGAGTTTTGACAATCCCTTCTGACAATGCGGTCAGTTGTCTTTCCA  644

seq1  CGTGTGTGCTTCGGGGTCCTGAGGCCTGCTGCAGTAACCAGCTGGCCCTA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGTGCTTCGGGGTCCTGAGGCCTGCTGCAGTAACCAGCTGGCCCTA  694

seq1  GGCATTAACTGCAGCACTTGGAAGATCCAATCAGAAGGATCAGGAGTTCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTAACTGCAGCACTTGGAAGATCCAATCAGAAGGATCAGGAGTTCC  744

seq1  AGACCAGCCTCAGCAGCATTGCAAACTCAAGGCCAGCCTGGGATATATGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGCCTCAGCAGCATTGCAAACTCAAGGCCAGCCTGGGATATATGA  794

seq1  GACCTCCTTCAAATTCAAGACCACAGGAAACCTGCCTCAAAACAAATAAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCCTTCAAATTCAAGACCACAGGAAACCTGCCTCAAAACAAATAAG  844

seq1  CAAACAAACAAAGTATAAGCAAAATAAATGTGGCAAGTATAAATGAGCAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAAGTATAAGCAAAATAAATGTGGCAAGTATAAATGAGCAC  894

seq1  CCACTGACTTCAAAGGCAACTGTCATGGCTGTTCTTGGTTGTCAACTTGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGACTTCAAAGGCAACTGTCATGGCTGTTCTTGGTTGTCAACTTGA  944

seq1  CTACATCTCAAATTAACTGATCCATACCTTCTGCTGGAAGCCTACATAAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCTCAAATTAACTGATCCATACCTTCTGCTGGAAGCCTACATAAG  994

seq1  GGCCTGGAGGAAGGCAGCTTTTGCCCTTTGTCTGCTCTGACCTTGCTAAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGAGGAAGGCAGCTTTTGCCCTTTGTCTGCTCTGACCTTGCTAAC  1044

seq1  AAGTCCATTCCTTTACTGGCATTAGTGCCTACTTCTTTAGAATTC  1090
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCATTCCTTTACTGGCATTAGTGCCTACTTCTTTAGAATTC  1089


seq1: chr8_44063922_44065093
seq2: B6Ng01-184F18.g_67_1249

seq1  GAATTCTCTGTTTAACCCTGAAGGTTGATGTGTTCATCATTCAAGGAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTTTAACCCTGAAGGTTGATGTGTTCATCATTCAAGGAGTA  50

seq1  GCTTGATTTCTAACACACTGCAGGCTTCGAGGCTGAAGAAAATACTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGATTTCTAACACACTGCAGGCTTCGAGGCTGAAGAAAATACTGAGA  100

seq1  TAAAACATTGCCCTAAACCACAGTTACTTTGGATTCCAGGAAGATCCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACATTGCCCTAAACCACAGTTACTTTGGATTCCAGGAAGATCCAAC  150

seq1  CTGGAAGAAGAGACCAACATGAATATGAAGGTAATCACCCATAAGGAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGAAGAGACCAACATGAATATGAAGGTAATCACCCATAAGGAATA  200

seq1  GACTGCACATTTGAACAGAAGTGATTACCCACTTTGTCTCTTTGTCCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCACATTTGAACAGAAGTGATTACCCACTTTGTCTCTTTGTCCCTT  250

seq1  CCAAAAACAAGGTCTTTGTTGGCCTAAATAATAGTCCCAGAACTAAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAACAAGGTCTTTGTTGGCCTAAATAATAGTCCCAGAACTAAAATA  300

seq1  ATACTCAATCAGATGATATCATGATTAGAACTATTTTGAATTATCCAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCAATCAGATGATATCATGATTAGAACTATTTTGAATTATCCAGAC  350

seq1  ATTTGCCTTGTTTATATCTGAAATATTTTCCTCTTTTTTTTTTCATTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCCTTGTTTATATCTGAAATATTTTCCTCTTTTTTTTTTCATTATA  400

seq1  ATGGGTTGCTTAAAGCCTTTCTTCCCCCTGCAAGTTTGTTACTATATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTGCTTAAAGCCTTTCTTCCCCCTGCAAGTTTGTTACTATATTAT  450

seq1  AGATGCTGCCCTGGTGAAGAGGATTATAAATCCTTCAATCCTTCCTATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGCCCTGGTGAAGAGGATTATAAATCCTTCAATCCTTCCTATCC  500

seq1  TACCTACTTCCTTCCCAAAACTGCTAAATTTCTAGCATAAGGCAACCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTACTTCCTTCCCAAAACTGCTAAATTTCTAGCATAAGGCAACCACA  550

seq1  AGGTAGGGTGGGACAACAGGAATAATTTTTCCTCAATCACCACCTTATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGGTGGGACAACAGGAATAATTTTTCCTCAATCACCACCTTATAG  600

seq1  CTATTTAGCATTTTCACTAAACTGCTAAACTCAGACACTTTTTCCTTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTAGCATTTTCACTAAACTGCTAAACTCAGACACTTTTTCCTTCTA  650

seq1  AATTCTGAGACTGCATTCCAACATAAGCTGGAGATAACCCCCATCTGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGAGACTGCATTCCAACATAAGCTGGAGATAACCCCCATCTGCAA  700

seq1  TAAGGAATTTCCTTTGTCCATCGGATTCTGCTGAATCTCCTATTCCAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAATTTCCTTTGTCCATCGGATTCTGCTGAATCTCCTATTCCAGCT  750

seq1  CCCACTGTTTGAGTGGCAGGCAGTGCTAAAGGCTATTTGACCCGAAATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGTTTGAGTGGCAGGCAGTGCTAAAGGCTATTTGACCCGAAATCT  800

seq1  TTTTTCAGTGTATTCTCTACTAAACCTGGAAAGAATCTTTATTATTTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAGTGTATTCTCTACTAAACCTGGAAAGAATCTTTATTATTTAAA  850

seq1  ACATCTGTCCTGTACTTTTGAGCAAGTTCTCCCCACTGCCCTTCCCCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGTCCTGTACTTTTGAGCAAGTTCTCCCCACTGCCCTTCCCCTCT  900

seq1  ATCACCCTACCTCGAATTAACTCCCTTTGTTCTCCTAGACGAGTTCACTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCCTACCTCGAATTAACTCCCTTTGTTCTCCTAGACGAGTTCACTT  950

seq1  CTACTTT-CATGTCAACTGTATGTATATAATTTATGTGTGTGCATAAAA-  998
      ||||||| ||||||||||| ||||||||||||||||||||||||||||| 
seq2  CTACTTTCCATGTCAACTG-ATGTATATAATTTATGTGTGTGCATAAAAC  999

seq1  CCTGGGACACATGAAGGAAGGAAAGCAT-GAGATATTTGGG--AGACTGA  1045
      |||||||||||||||||||||||||||| ||||||||||||   ||||||
seq2  CCTGGGACACATGAAGGAAGGAAAGCATGGAGATATTTGGGGAGGACTGA  1049

seq1  CTTCGTTTACTTACTATGATTGTCTCCAGTTGTCTCTA-CTTTTCTGC--  1092
      ||||||| ||||||||||||||||  ||| |||||||| |||||||||  
seq2  CTTCGTTAACTTACTATGATTGTCCTCAG-TGTCTCTACCTTTTCTGCAG  1098

seq1  AGAGAACACAGCTTCATTC-TTCATGTC--TGAAATAATTCTTTCATGAA  1139
      ||||||||||||||||||| | || |||   ||||  |||||||||||||
seq2  AGAGAACACAGCTTCATTCGTCCAGGTCCTGGAAAATATTCTTTCATGAA  1148

seq1  TACAAACC-ACATTGTCTTTATG--CATTCTTTTTT  1172
      | |||||| ||| || |||||||  ||||| |||||
seq2  TCCAAACCGACA-TGCCTTTATGGCCATTCGTTTTT  1183


| Home | SequenceCutter | Blast | Download |