BAC Information

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BAC

Clone NameB6Ng01-184O02
Chromosome8 (Build37)
Map Location 112,008,919 - 112,111,430
singlet/doubletdoublet
Overlap genePmfbp1, Dhx38, Txnl4b, Hp
Upstream geneAtbf1, 4922502B01Rik, Gm1943, LOC100042829
Downstream geneDhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546, Hydin, LOC672398
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184O02.bB6Ng01-184O02.g
ACCGA010145GA010146
length1,139631
definitionB6Ng01-184O02.b B6Ng01-184O02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,008,919 - 112,010,080)(112,110,801 - 112,111,430)
sequence
gaattcaggagagaaccaggttcctgctttctactggcaacatctggcat
tttgtagctctgcacctttgatctttgcggataccaaagcccttcacagc
ccacaccgcattaccaatggacgcagcagccacttgttaggaaatatggc
cggatgcctctcttcacccttgttttccgtgttgcaatatggaaatggtt
cttggttctgggaggaaagatttcattgtggatctcaaatattccaccac
caccccccacacaccacccccgtctctatctgtctctcttccctctctct
tctctctctcttctctctctgtctatctctctcttagtttcttcaaatcc
tgctttttttttaaaggctaaatgtacttcataaccacttcttaataaac
agcacttcatttatatttccaattcttccgtaggctcatttctgtccccc
agccccagacctcccattgcagagagatatgaaaactctcttctgcccct
gggagccaagaatctgcattgccgatgaggttgcaaattcagacacaata
aacagaattaagaaaaaccgagctggcatttgacagaaattgtaaaatga
cactcagaaatgttgctcttgtggaaattactgatattaaaatataaatc
agtgtcttgtgtttcccgtagcaccaggggcctctattaggttatacagt
ttgattgctgagctgaacctaagagacttggcagttccgtgttgaagtta
tcacgaagtctttaacccctttcctgccggagagcaggcatctaggaaca
atagcctgctggagctatcccaactgcccctaacagtcctcatctttttc
tctgggatgtttaaaagcttggagaagatagagaagggctaagatagaag
aaaaagagggaggatttagaaaatcctttctcaagatagaatcttgtata
atgccaggctgaaggcagataaggaaacaaaagacagttctaccctcctg
aagccagaaggaggacgaaaggagaggaaataaagaaaaaaaatcccata
taaaatataacaccagtcacacttgtggggtttttttttctttgtcatct
ggtaccattctgtagtgacctatactgtccaatgttcga
gaattcagtgggagccgagggaccactgaccgcctagtcttgacttctat
tgtgtcgagtgagtcttggcagtcaggtgacattcctgtaagaaccttgt
ggctagataggtgggaaataaagccactgcacctggaccagggtacttgg
ctgagaggtgtttgtgcaggaggagcctagtgggaatgacctgacatggc
acccagcagggctgtgaaagacagggaaatgacacacacacacacacaca
cacacacacaaaagcaacctttcggcagggttgggaaggacctgggaacg
gacagcagggtcagctctcagggagggcaggaccttcaggagtgggaggg
aactcagccattcacattcctcaaatgactaggaggggggctgtgggtgt
ggaaaatcccagctggagagtaccctacaggaaattcaaaagaggacaga
ggtcttgtcgacctgttggcttgggtccaggagtgaggctgttcaaagga
ccagaactggctctacctgctccagtcagagtcaccgagcagtgccctgg
ctccggcaatttcagttactctggatgtggagtctggtttttgttattgt
tcttttcttcattccctcctcctcctcctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_112008919_112010080
seq2: B6Ng01-184O02.b_46_1184

seq1  GAATTCAGGAGAGAACCAGGTTCCTGCTTTCTACTGGCAACATCTGGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAGAGAACCAGGTTCCTGCTTTCTACTGGCAACATCTGGCAT  50

seq1  TTTGTAGCTCTGCACCTTTGATCTTTGCGGATACCAAAGCCCTTCACAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGCTCTGCACCTTTGATCTTTGCGGATACCAAAGCCCTTCACAGC  100

seq1  CCACACCGCATTACCAATGGACGCAGCAGCCACTTGTTAGGAAATATGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACCGCATTACCAATGGACGCAGCAGCCACTTGTTAGGAAATATGGC  150

seq1  CGGATGCCTCTCTTCACCCTTGTTTTCCGTGTTGCAATATGGAAATGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATGCCTCTCTTCACCCTTGTTTTCCGTGTTGCAATATGGAAATGGTT  200

seq1  CTTGGTTCTGGGAGGAAAGATTTCATTGTGGATCTCAAATATTCCACCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTCTGGGAGGAAAGATTTCATTGTGGATCTCAAATATTCCACCAC  250

seq1  CACCCCCCACACACCACCCCCGTCTCTATCTGTCTCTCTTCCCTCTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCCACACACCACCCCCGTCTCTATCTGTCTCTCTTCCCTCTCTCT  300

seq1  TCTCTCTCTCTTCTCTCTCTGTCTATCTCTCTCTTAGTTTCTTCAAATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTTCTCTCTCTGTCTATCTCTCTCTTAGTTTCTTCAAATCC  350

seq1  TGCTTTTTTTTTAAAGGCTAAATGTACTTCATAACCACTTCTTAATAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTTTTTTAAAGGCTAAATGTACTTCATAACCACTTCTTAATAAAC  400

seq1  AGCACTTCATTTATATTTCCAATTCTTCCGTAGGCTCATTTCTGTCCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTCATTTATATTTCCAATTCTTCCGTAGGCTCATTTCTGTCCCCC  450

seq1  AGCCCCAGACCTCCCATTGCAGAGAGATATGAAAACTCTCTTCTGCCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCAGACCTCCCATTGCAGAGAGATATGAAAACTCTCTTCTGCCCCT  500

seq1  GGGAGCCAAGAATCTGCATTGCCGATGAGGTTGCAAATTCAGACACAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCAAGAATCTGCATTGCCGATGAGGTTGCAAATTCAGACACAATA  550

seq1  AACAGAATTAAGAAAAACCGAGCTGGCATTTGACAGAAATTGTAAAATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAATTAAGAAAAACCGAGCTGGCATTTGACAGAAATTGTAAAATGA  600

seq1  CACTCAGAAATGTTGCTCTTGTGGAAATTACTGATATTAAAATATAAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGAAATGTTGCTCTTGTGGAAATTACTGATATTAAAATATAAATC  650

seq1  AGTGTCTTGTGTTTCCCGTAGCACCAGGGGCCTCTATTAGGTTATACAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTTGTGTTTCCCGTAGCACCAGGGGCCTCTATTAGGTTATACAGT  700

seq1  TTGATTGCTGAGCTGAACCTAAGAGACTTGGCAGTTCCGTGTTGAAGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGCTGAGCTGAACCTAAGAGACTTGGCAGTTCCGTGTTGAAGTTA  750

seq1  TCACGAAGTCTTTAACCCCTTTCCTGCCGGAGAGCAGGCATCTAGGAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGAAGTCTTTAACCCCTTTCCTGCCGGAGAGCAGGCATCTAGGAACA  800

seq1  ATAGCCTGCTGGAGCTATCCCAACTGCCCCTAACAGTCCTCATCTTTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCTGCTGGAGCTATCCCAACTGCCCCTAACAGTCCTCATCTTTTTC  850

seq1  TCTGGGATGTTTAAAAGCTTGGAGAAGATAGAGAAGGGCTAAGATAAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCTGGGATGTTTAAAAGCTTGGAGAAGATAGAGAAGGGCTAAGAT-AGAA  899

seq1  GAAAAAGAGGGAGGATTTAGAAAATCCTTTCTCAAGATAGAAATCTTGTA  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GAAAAAGAGGGAGGATTTAGAAAATCCTTTCTCAAGATAG-AATCTTGTA  948

seq1  TAATGCCAGGCTGAAGGCAGATAAGGAAACAAAAGACAAGTTCTACCCTC  1000
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TAATGCCAGGCTGAAGGCAGATAAGGAAACAAAAGAC-AGTTCTACCCTC  997

seq1  CTGAAGGCAAGAAAGGAAGGACGAAAGGAAGGAAGAAAATAAAAAGAAAA  1050
      ||||| || ||||  | ||||||||||||    || |||||||    |||
seq2  CTGAA-GCCAGAA--GGAGGACGAAAGGA---GAGGAAATAAA---GAAA  1038

seq1  AAAAATCCCATTATAAAAATATAACACCAGTCACACTTGTGGGGTTTTTT  1100
      |||||||||| ||| |||||||||||||||||||||||||||||||||||
seq2  AAAAATCCCA-TAT-AAAATATAACACCAGTCACACTTGTGGGGTTTTTT  1086

seq1  TTTTTTCTTTTGTCATCTGGTACCATCCTGTAAGGTGACTATTACTGTCC  1150
      |||     |||||||||||||||||| |||||  |||||   |||||| |
seq2  TTT----CTTTGTCATCTGGTACCATTCTGTA--GTGACCTATACTGT-C  1129

seq1  CAATGGTTTCGA  1162
      |||||  |||||
seq2  CAATG--TTCGA  1139

seq1: chr8_112110801_112111430
seq2: B6Ng01-184O02.g_66_696 (reverse)

seq1  GGAGGAGGAGGAGGAGGGAATGAAG-AAAGAACAATAACAAAAACCAGAC  49
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGAGGAGGAGGAGGAGGGAATGAAGAAAAGAACAATAACAAAAACCAGAC  50

seq1  TCCACATCCAGAGTAACTGAAATTGCCGGAGCCAGGGCACTGCTCGGTGA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATCCAGAGTAACTGAAATTGCCGGAGCCAGGGCACTGCTCGGTGA  100

seq1  CTCTGACTGGAGCAGGTAGAGCCAGTTCTGGTCCTTTGAACAGCCTCACT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACTGGAGCAGGTAGAGCCAGTTCTGGTCCTTTGAACAGCCTCACT  150

seq1  CCTGGACCCAAGCCAACAGGTCGACAAGACCTCTGTCCTCTTTTGAATTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGACCCAAGCCAACAGGTCGACAAGACCTCTGTCCTCTTTTGAATTT  200

seq1  CCTGTAGGGTACTCTCCAGCTGGGATTTTCCACACCCACAGCCCCCCTCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAGGGTACTCTCCAGCTGGGATTTTCCACACCCACAGCCCCCCTCC  250

seq1  TAGTCATTTGAGGAATGTGAATGGCTGAGTTCCCTCCCACTCCTGAAGGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCATTTGAGGAATGTGAATGGCTGAGTTCCCTCCCACTCCTGAAGGT  300

seq1  CCTGCCCTCCCTGAGAGCTGACCCTGCTGTCCGTTCCCAGGTCCTTCCCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCTCCCTGAGAGCTGACCCTGCTGTCCGTTCCCAGGTCCTTCCCA  350

seq1  ACCCTGCCGAAAGGTTGCTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGCCGAAAGGTTGCTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  400

seq1  CATTTCCCTGTCTTTCACAGCCCTGCTGGGTGCCATGTCAGGTCATTCCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCCTGTCTTTCACAGCCCTGCTGGGTGCCATGTCAGGTCATTCCC  450

seq1  ACTAGGCTCCTCCTGCACAAACACCTCTCAGCCAAGTACCCTGGTCCAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGCTCCTCCTGCACAAACACCTCTCAGCCAAGTACCCTGGTCCAGG  500

seq1  TGCAGTGGCTTTATTTCCCACCTATCTAGCCACAAGGTTCTTACAGGAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGGCTTTATTTCCCACCTATCTAGCCACAAGGTTCTTACAGGAAT  550

seq1  GTCACCTGACTGCCAAGACTCACTCGACACAATAGAAGTCAAGACTAGGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCTGACTGCCAAGACTCACTCGACACAATAGAAGTCAAGACTAGGC  600

seq1  GGTCAGTGGTCCCTCGGCTCCCACTGAATTC  630
      |||||||||||||||||||||||||||||||
seq2  GGTCAGTGGTCCCTCGGCTCCCACTGAATTC  631