BAC Information

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BAC

Clone NameB6Ng01-185J11
Chromosome8 (Build37)
Map Location 34,327,425 - 34,506,745
singlet/doubletdoublet
Overlap geneWrn, Purg
Upstream geneEG546052, LOC100042715, LOC628408, EG628412
Downstream geneLOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2, Rbpms, LOC100042769, Dctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66, LOC619780, LOC666718, EG234159
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185J11.bB6Ng01-185J11.g
ACCGA010661GA010662
length1,1361,170
definitionB6Ng01-185J11.b B6Ng01-185J11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,327,425 - 34,328,553)(34,505,602 - 34,506,745)
sequence
gaattctttctcctctaagttccttttgtcagggtattttatcacagcag
cagaaataaagactgtgggctaaaaccctctgaaactacaagacaaaaat
aaatatttctccattttaagctttccatcaggggcttttaatacagtaac
catcacttataaaaagatgatacaattttccttgttaaacttttctttaa
tttttttgtttttccattctattattagaggggatgagaaaagcatgcat
accatatttatgtgtggtgagaggataacctactgaagtcaaatctcttc
ttcctccaagtggatcccaggaattgaactcaggttgttaagtttggcca
caggcaatgtaagcaatctcaccaaacccaaaccatggcttaaaggacaa
agagagacaggtagctagtagacctaaagtctgggcaaaaaggacatagt
agttacttttctgtggctgtgataaaacaccattactgacataaacataa
cttatagaatgaagggcttttggggggcttcaggttccaaaaggataata
tcccatgacatgggagcagagacagtaggcagctgggagttcacatcttg
gaccagaaaccagaataaagaaaacattcaaaatagcataagtcttttga
aacttgaaagtatggccccagtgacacacgtcctccatcaagaccacatc
tcctaggcctcccagtcaccaactggggaccagggattcaaatgccagag
actttacagggacacaacatagggcttccagtgactaaaagaaagcatca
aaacagtgaagggaaaagaaaacgggccaatgagtggctggaaccagtct
caggacccagcaactctggtggtgtcgggaaccatctaggatatgctagc
aggggaccttcctggaggtggcccacttcttttgcatgatctaccatggg
tgagcttctaggaggtaaggtcccaaggagattttaattcccaggaactg
cttctgcagttgatatgcctttcctattccttgtaaatttaatattacat
aatacttgggtattcgccctccccctttgagccagactcttgcagatcaa
caagcttggaactgtccttgtagtgatgatgtatag
gaattctctttttacacctatgcatggtaagctttttaggacatttacta
aacagcaatggatttcctcctgttagagctcaagattatgaaattattgg
tacaaatcttactgctagtctgaagaacatgaaggccaatacagcagact
ctgaagcaaatgagtaagtggcaagaaacgctctggacttaggtagctgt
atacattgttatccttattgttggtgcattgttttgtggttctatgctta
gatctgttgtgaagttttggcatttcaagtgtgtatttttaggtaaagct
gcagtttgacagtagctgaggaaaaaatctcatcctaatgacaaatggaa
agaaccaacaaactaaactgctctctcatgtcccacttagatcccagaca
ccaagagaagcaattgagaactgaaaatacatctgcttttttgaggagag
ggaggagaaaacagagaaagaactttgtctacaatagtcaattaattcca
tggaatttgttcaaaatagaccagctaaattgctactgcaaaccaccact
gggccaaagataggcaatcacatggcttgtttcaggaaagtagaattttt
aagacaatcaaaatatttatgtgcttatgttctataagctataggtatgc
tgctcttaaatgctgtctttgatagtccgttgagaaaggcatcactctct
aacactgtttgttggctggtgctggcacggcacagtggaggacttagtgt
ctacagcaatgccctcgtgaccattgcgtatctagttctccactcatgaa
ctacacaacagacctatcttgctgcagctaggtaagtggcccttccgtga
gttcaccatcataggttattaatatggccaagggaggagaggatcaaagt
caagtacttcattctctgggacactgaacgaacagttagcaacataccac
ttagctacttgttatttctaataattaatttcaggaaatggcatttggac
atggtttaatgtaatgtgtaataatagtgtaatggctaggttttaaaaaa
ttcctatgtcatgcagaatgtacagatgatattggaattatattacaagg
taaccaggcacacttccttccaactctctggaggaactttcacataatac
tgttcccctctcgaaacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_34327425_34328553
seq2: B6Ng01-185J11.b_44_1179

seq1  GAATTCTTTCTCCTCTAAGTTCCTTTTGTCAGGGTATTTTATCACAGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTCCTCTAAGTTCCTTTTGTCAGGGTATTTTATCACAGCAG  50

seq1  CAGAAATAAAGACTGTGGGCTAAAACCCTCTGAAACTACAAGACAAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATAAAGACTGTGGGCTAAAACCCTCTGAAACTACAAGACAAAAAT  100

seq1  AAATATTTCTCCATTTTAAGCTTTCCATCAGGGGCTTTTAATACAGTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTCTCCATTTTAAGCTTTCCATCAGGGGCTTTTAATACAGTAAC  150

seq1  CATCACTTATAAAAAGATGATACAATTTTCCTTGTTAAACTTTTCTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTTATAAAAAGATGATACAATTTTCCTTGTTAAACTTTTCTTTAA  200

seq1  TTTTTTTGTTTTTCCATTCTATTATTAGAGGGGATGAGAAAAGCATGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGTTTTTCCATTCTATTATTAGAGGGGATGAGAAAAGCATGCAT  250

seq1  ACCATATTTATGTGTGGTGAGAGGATAACCTACTGAAGTCAAATCTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATTTATGTGTGGTGAGAGGATAACCTACTGAAGTCAAATCTCTTC  300

seq1  TTCCTCCAAGTGGATCCCAGGAATTGAACTCAGGTTGTTAAGTTTGGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCAAGTGGATCCCAGGAATTGAACTCAGGTTGTTAAGTTTGGCCA  350

seq1  CAGGCAATGTAAGCAATCTCACCAAACCCAAACCATGGCTTAAAGGACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAATGTAAGCAATCTCACCAAACCCAAACCATGGCTTAAAGGACAA  400

seq1  AGAGAGACAGGTAGCTAGTAGACCTAAAGTCTGGGCAAAAAGGACATAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGACAGGTAGCTAGTAGACCTAAAGTCTGGGCAAAAAGGACATAGT  450

seq1  AGTTACTTTTCTGTGGCTGTGATAAAACACCATTACTGACATAAACATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTTTTCTGTGGCTGTGATAAAACACCATTACTGACATAAACATAA  500

seq1  CTTATAGAATGAAGGGCTTTTGGGGGGCTTCAGGTTCCAAAAGGATAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAGAATGAAGGGCTTTTGGGGGGCTTCAGGTTCCAAAAGGATAATA  550

seq1  TCCCATGACATGGGAGCAGAGACAGTAGGCAGCTGGGAGTTCACATCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGACATGGGAGCAGAGACAGTAGGCAGCTGGGAGTTCACATCTTG  600

seq1  GACCAGAAACCAGAATAAAGAAAACATTCAAAATAGCATAAGTCTTTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGAAACCAGAATAAAGAAAACATTCAAAATAGCATAAGTCTTTTGA  650

seq1  AACTTGAAAGTATGGCCCCAGTGACACACGTCCTCCATCAAGACCACATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGAAAGTATGGCCCCAGTGACACACGTCCTCCATCAAGACCACATC  700

seq1  TCCTAGGCCTCCCAGTCACCAACTGGGGACCAGGGATTCAAATGCCAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGGCCTCCCAGTCACCAACTGGGGACCAGGGATTCAAATGCCAGAG  750

seq1  ACTTTACAGGGACACAACATAGGGCTTCCAGTGACTAAAAGAAAGCATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACAGGGACACAACATAGGGCTTCCAGTGACTAAAAGAAAGCATCA  800

seq1  AAACAGTGAAGGGAAAAGAAAACGGGCCAATGAGTGGCTGGAACCAGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTGAAGGGAAAAGAAAACGGGCCAATGAGTGGCTGGAACCAGTCT  850

seq1  CAGGACCCAGCAACTCTGGTGGTGTCGGGAACCATCTAGGATATGCTAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCCAGCAACTCTGGTGGTGTCGGGAACCATCTAGGATATGCTAGC  900

seq1  AGGGGACCTTCCTGGAGGTGGCCCACTTCTTTTGCATGATCTACCATGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGACCTTCCTGGAGGTGGCCCACTTCTTTTGCATGATCTACCATGGG  950

seq1  TGAGC-TCTAGGAGGTAAGGTCCCAAGGAGA-TTTAATTCCCAGG-ACTG  997
      ||||| ||||||||||||||||||||||||| ||||||||||||| ||||
seq2  TGAGCTTCTAGGAGGTAAGGTCCCAAGGAGATTTTAATTCCCAGGAACTG  1000

seq1  CTTCTTGCAGTTGATATGCCTTTCCTA-TCCTTGTAAAATTAATATTACA  1046
      |||| |||||||||||||||||||||| |||||||||| |||||||||||
seq2  CTTC-TGCAGTTGATATGCCTTTCCTATTCCTTGTAAATTTAATATTACA  1049

seq1  TAATACTTGGGTATTCGCCCT-CCCCTTTGAG-CAGACTTCTGCAGATCA  1094
      ||||||||||||||||||||| |||||||||| ||||||  |||||||||
seq2  TAATACTTGGGTATTCGCCCTCCCCCTTTGAGCCAGACTCTTGCAGATCA  1099

seq1  ACAAAGCTGG-ACTGT-CTTGTAGTGATGATGTATAG  1129
      ||||   ||| ||||| ||||||||||||||||||||
seq2  ACAAGCTTGGAACTGTCCTTGTAGTGATGATGTATAG  1136

seq1: chr8_34505602_34506745
seq2: B6Ng01-185J11.g_65_1234 (reverse)

seq1  TTTGTTT--TGAGGGGAACAGTTATATGTG-AAGT--CTC---AGAGTT-  41
      |||||||   ||||||||||||  |||||| ||||  |||   |||||| 
seq2  TTTGTTTCGAGAGGGGAACAGTATTATGTGAAAGTTCCTCCAGAGAGTTG  50

seq1  GAAGG-AGTGTGGCTTGTT-TCTTGT-ATAT-ATTCTATAATCATCTTGT  87
      ||||| |||||| || |||  ||||| |||| |||| |  |||||| |||
seq2  GAAGGAAGTGTGCCTGGTTACCTTGTAATATAATTCCAATATCATC-TGT  99

seq1  ACATTCTGCATGACATAGGAATTTTTTAAAACCTAG-CATTACACTATTA  136
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACATTCTGCATGACATAGGAATTTTTTAAAACCTAGCCATTACACTATTA  149

seq1  TTACACATTACA-TAAACATTGTCCAAATGCCA-TTCCTGAAA-TAATTA  183
      |||||||||||| |||||  ||||||||||||| ||||||||| ||||||
seq2  TTACACATTACATTAAACCATGTCCAAATGCCATTTCCTGAAATTAATTA  199

seq1  -TAG-AATA--CAGT-GCTAAGTGGTATGTGGCT-ACTG-TCG-TCAGTG  225
       ||| ||||   ||| |||||||||||||| ||| |||| ||| ||||||
seq2  TTAGAAATAACAAGTAGCTAAGTGGTATGTTGCTAACTGTTCGTTCAGTG  249

seq1  TCCCAGAGAATGAAGTAC-TGACTTTGATCCTCTCCT-CCTTGGCCATAT  273
      |||||||||||||||||| |||||||||||||||||| ||||||||||||
seq2  TCCCAGAGAATGAAGTACTTGACTTTGATCCTCTCCTCCCTTGGCCATAT  299

seq1  TAAATAACCTATGATGGTGAACTCACGG-AGGGCCACTTACCTAGCTGCA  322
      | |||||||||||||||||||||||||| |||||||||||||||||||||
seq2  T-AATAACCTATGATGGTGAACTCACGGAAGGGCCACTTACCTAGCTGCA  348

seq1  GCAAGATAGGTCTGTTGTGTAGTTCATGAGTGGAGAACTAGATACGCAAT  372
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGATAGGTCTGTTGTGTAGTTCATGAGTGGAGAACTAGATACGCAAT  398

seq1  GGTCACGAGGGCATTGCTGTAGACACTAAGTCCTCCACTGTGCCGTGCCA  422
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACGAGGGCATTGCTGTAGACACTAAGTCCTCCACTGTGCCGTGCCA  448

seq1  GCACCAGCCAACAAACAGTGTTAGAGAGTGATGCCTTTCTCAACGGACTA  472
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAGCCAACAAACAGTGTTAGAGAGTGATGCCTTTCTCAACGGACTA  498

seq1  TCAAAGACAGCATTTAAGAGCAGCATACCTATAGCTTATAGAACATAAGC  522
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGACAGCATTTAAGAGCAGCATACCTATAGCTTATAGAACATAAGC  548

seq1  ACATAAATATTTTGATTGTCTTAAAAATTCTACTTTCCTGAAACAAGCCA  572
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAATATTTTGATTGTCTTAAAAATTCTACTTTCCTGAAACAAGCCA  598

seq1  TGTGATTGCCTATCTTTGGCCCAGTGGTGGTTTGCAGTAGCAATTTAGCT  622
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTGCCTATCTTTGGCCCAGTGGTGGTTTGCAGTAGCAATTTAGCT  648

seq1  GGTCTATTTTGAACAAATTCCATGGAATTAATTGACTATTGTAGACAAAG  672
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTATTTTGAACAAATTCCATGGAATTAATTGACTATTGTAGACAAAG  698

seq1  TTCTTTCTCTGTTTTCTCCTCCCTCTCCTCAAAAAAGCAGATGTATTTTC  722
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTCTGTTTTCTCCTCCCTCTCCTCAAAAAAGCAGATGTATTTTC  748

seq1  AGTTCTCAATTGCTTCTCTTGGTGTCTGGGATCTAAGTGGGACATGAGAG  772
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCAATTGCTTCTCTTGGTGTCTGGGATCTAAGTGGGACATGAGAG  798

seq1  AGCAGTTTAGTTTGTTGGTTCTTTCCATTTGTCATTAGGATGAGATTTTT  822
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTTAGTTTGTTGGTTCTTTCCATTTGTCATTAGGATGAGATTTTT  848

seq1  TCCTCAGCTACTGTCAAACTGCAGCTTTACCTAAAAATACACACTTGAAA  872
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGCTACTGTCAAACTGCAGCTTTACCTAAAAATACACACTTGAAA  898

seq1  TGCCAAAACTTCACAACAGATCTAAGCATAGAACCACAAAACAATGCACC  922
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAAACTTCACAACAGATCTAAGCATAGAACCACAAAACAATGCACC  948

seq1  AACAATAAGGATAACAATGTATACAGCTACCTAAGTCCAGAGCGTTTCTT  972
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAAGGATAACAATGTATACAGCTACCTAAGTCCAGAGCGTTTCTT  998

seq1  GCCACTTACTCATTTGCTTCAGAGTCTGCTGTATTGGCCTTCATGTTCTT  1022
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTTACTCATTTGCTTCAGAGTCTGCTGTATTGGCCTTCATGTTCTT  1048

seq1  CAGACTAGCAGTAAGATTTGTACCAATAATTTCATAATCTTGAGCTCTAA  1072
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTAGCAGTAAGATTTGTACCAATAATTTCATAATCTTGAGCTCTAA  1098

seq1  CAGGAGGAAATCCATTGCTGTTTAGTAAATGTCCTAAAAAGCTTACCATG  1122
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGAAATCCATTGCTGTTTAGTAAATGTCCTAAAAAGCTTACCATG  1148

seq1  CATAGGTGTAAAAAGAGAATTC  1144
      ||||||||||||||||||||||
seq2  CATAGGTGTAAAAAGAGAATTC  1170