BAC Information

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BAC

Clone NameB6Ng01-186A20
Chromosome8 (Build37)
Map Location 110,049,084 - 110,186,178
singlet/doubletdoublet
Overlap geneWwp2, Psmd7
Upstream geneCdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1, Nob1, LOC100042812
Downstream geneLOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186A20.bB6Ng01-186A20.g
ACCGA011000GA011001
length1,099720
definitionB6Ng01-186A20.b B6Ng01-186A20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,185,088 - 110,186,178)(110,049,084 - 110,049,681)
sequence
gaattcaagtagtcattattctcttctttcaagcatctactggttattaa
ctacatggcaggcacatgctagatattaaaaatgagagaagtagcctccg
tcctcagggctctgataaggtagaggagcttaaagccagcacttgcggtg
agccttgatgccctttagaagaaacaggattggaatatcacagtgccgta
gaaagtgattggttctgctagaaggataaagaaacctagctagttcccaa
ggctcaggtcacaagctggctcttgactaagagttggtgaaacaaactct
gttagcagatgccaaaggagggactagatctcaaagttcaacaggataaa
atctgtaagatttggccataggttataggtagaaagcatgagaggggcgg
aatatgatcacagcttctagtactgatgttgctaccacatccattgctgt
tcaccactcccatacctgcccggcaccaaaccaagtcaccgaacacgaag
gaaaaccagaagccagtgctactctctgggtgcaatgtgtctctgccaag
acctggtgagatctggctgcaatgtagcaagagttggcgcattaagagat
cagtgtcctttctcttgagaccacattagttcttatcaattctgatcggt
tgtgatgaagtgagttcctacggctgtctctgtctgtcttctgcgcatgc
tcactggccattctcacgccccacgtgtcatttgccgtattagagcagca
tgagaggcccttgccagatccagcttcccgatcttgaagtctacctccag
aagcaagcgctaaataaacctttactccttcaatgaccctgtctgtctac
agtcgtctgtgatagctacctaaagcagacaacactaggaagaagatgaa
agagaggtgctgaggagagctgtgggtaaggcaggctgctgtctatggga
gaagccacaaaaagatgcttcttaaggaagccatagctgaaggtggtatt
cttgaaggcctaagaaagatggaaggaaatatatccggaaagtagaaaca
gagctaaaccttgcagaacaaacttggtgtgcgggaacacagaagaaga
gaattcctgcaccatagaccatcagtgtcagtgggaaacccccctcaaac
tgcttcctccggttggcttgtggggtcactcttctttgggcggccattgt
gcagtcttgctaaaaatcattgtcagctctttttcattgagccaatctaa
gaaatttgattgacatctttttttttttaagatttattttatttattata
tgtaagtacactgtagctgtcttcagacatcagaagagggcatcaggtct
tgttacagatggttgtgagccaccatgtggtttctgggaattgaactcag
gacctccggaagagcagtcagtgctcttaactgctgaaccatctctccag
tccaattgacatctttttgtggtttgaattttaatttctttgagtattat
tgaaactttagtattttgcttctttatgaattaccttatttaatttttgt
tccacttttctatttggctatttgtgtttctctctttttgtatatatgta
tgtgtgtatgcatgcatgtaattatgtatgtatgtatgcaggtatgtaat
ctgcaggatttgtttacttatgataggatcccatatagcttaggatggcc
tagaacttgttctgtagcctaggagtctgactgggactctttatctcctg
tctctgcctcttgagtactatggcttcatggattttattgttgttgtttg
tttgtttgtttgtttgtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_110185088_110186178
seq2: B6Ng01-186A20.b_45_1143 (reverse)

seq1  TCTTC-TCTGTG-TCCCGCACACCAGGTTTGTTCTGCAAGGTTTAGCTCT  48
      ||||| |||||| |||||||||||| ||||||||||||||||||||||||
seq2  TCTTCTTCTGTGTTCCCGCACACCAAGTTTGTTCTGCAAGGTTTAGCTCT  50

seq1  GGTTCTTCCTTCCGGGATATATTTTCCTCCCATC-TTCTTA-GCCCTCA-  95
      | |||| | |||| ||||||| |||||| ||||| |||||| ||| ||| 
seq2  GTTTCTACTTTCC-GGATATA-TTTCCTTCCATCTTTCTTAGGCCTTCAA  98

seq1  -GATACCACC-TCAGCTATGGCTTCCTT-AGAAGCATC-TTTTGTGGC-T  140
        |||||||| ||||||||||||||||| ||||||||| ||||||||| |
seq2  GAATACCACCTTCAGCTATGGCTTCCTTAAGAAGCATCTTTTTGTGGCTT  148

seq1  CTCCCATAGACAGCAGCCTGCC-TACCCACAGCTCCTCCTCAGCACCTCT  189
      |||||||||||||||||||||| ||||||||||| |||||||||||||||
seq2  CTCCCATAGACAGCAGCCTGCCTTACCCACAGCT-CTCCTCAGCACCTCT  197

seq1  CTTTCATCTTCTTCCTAGTGTTGTCTGCTTTAGGTAGCTATCACAGACGA  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATCTTCTTCCTAGTGTTGTCTGCTTTAGGTAGCTATCACAGACGA  247

seq1  CTGTAGACAGACAGGGTCATTGAAGGAGTAAAGGTTTATTTAGCGCTTGC  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGACAGACAGGGTCATTGAAGGAGTAAAGGTTTATTTAGCGCTTGC  297

seq1  TTCTGGAGGTAGACTTCAAGATCGGGAAGCTGGATCTGGCAAGGGCCTCT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGGTAGACTTCAAGATCGGGAAGCTGGATCTGGCAAGGGCCTCT  347

seq1  CATGCTGCTCTAATACGGCAAATGACACGTGGGGCGTGAGAATGGCCAGT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGCTCTAATACGGCAAATGACACGTGGGGCGTGAGAATGGCCAGT  397

seq1  GAGCATGCGCAGAAGACAGACAGAGACAGCCGTAGGAACTCACTTCATCA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATGCGCAGAAGACAGACAGAGACAGCCGTAGGAACTCACTTCATCA  447

seq1  CAACCGATCAGAATTGATAAGAACTAATGTGGTCTCAAGAGAAAGGACAC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCGATCAGAATTGATAAGAACTAATGTGGTCTCAAGAGAAAGGACAC  497

seq1  TGATCTCTTAATGCGCCAACTCTTGCTACATTGCAGCCAGATCTCACCAG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCTTAATGCGCCAACTCTTGCTACATTGCAGCCAGATCTCACCAG  547

seq1  GTCTTGGCAGAGACACATTGCACCCAGAGAGTAGCACTGGCTTCTGGTTT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGCAGAGACACATTGCACCCAGAGAGTAGCACTGGCTTCTGGTTT  597

seq1  TCCTTCGTGTTCGGTGACTTGGTTTGGTGCCGGGCAGGTATGGGAGTGGT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCGTGTTCGGTGACTTGGTTTGGTGCCGGGCAGGTATGGGAGTGGT  647

seq1  GAACAGCAATGGATGTGGTAGCAACATCAGTACTAGAAGCTGTGATCATA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCAATGGATGTGGTAGCAACATCAGTACTAGAAGCTGTGATCATA  697

seq1  TTCCGCCCCTCTCATGCTTTCTACCTATAACCTATGGCCAAATCTTACAG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGCCCCTCTCATGCTTTCTACCTATAACCTATGGCCAAATCTTACAG  747

seq1  ATTTTATCCTGTTGAACTTTGAGATCTAGTCCCTCCTTTGGCATCTGCTA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATCCTGTTGAACTTTGAGATCTAGTCCCTCCTTTGGCATCTGCTA  797

seq1  ACAGAGTTTGTTTCACCAACTCTTAGTCAAGAGCCAGCTTGTGACCTGAG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTTTGTTTCACCAACTCTTAGTCAAGAGCCAGCTTGTGACCTGAG  847

seq1  CCTTGGGAACTAGCTAGGTTTCTTTATCCTTCTAGCAGAACCAATCACTT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGAACTAGCTAGGTTTCTTTATCCTTCTAGCAGAACCAATCACTT  897

seq1  TCTACGGCACTGTGATATTCCAATCCTGTTTCTTCTAAAGGGCATCAAGG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACGGCACTGTGATATTCCAATCCTGTTTCTTCTAAAGGGCATCAAGG  947

seq1  CTCACCGCAAGTGCTGGCTTTAAGCTCCTCTACCTTATCAGAGCCCTGAG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCGCAAGTGCTGGCTTTAAGCTCCTCTACCTTATCAGAGCCCTGAG  997

seq1  GACGGAGGCTACTTCTCTCATTTTTAATATCTAGCATGTGCCTGCCATGT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGAGGCTACTTCTCTCATTTTTAATATCTAGCATGTGCCTGCCATGT  1047

seq1  AGTTAATAACCAGTAGATGCTTGAAAGAAGAGAATAATGACTACTTGAAT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATAACCAGTAGATGCTTGAAAGAAGAGAATAATGACTACTTGAAT  1097

seq1  TC  1091
      ||
seq2  TC  1099

seq1: chr8_110049084_110049681
seq2: B6Ng01-186A20.g_62_659

seq1  GAATTCCTGCACCATAGACCATCAGTGTCAGTGGGAAACCCCCCTCAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCACCATAGACCATCAGTGTCAGTGGGAAACCCCCCTCAAAC  50

seq1  TGCTTCCTCCGGTTGGCTTGTGGGGTCACTCTTCTTTGGGCGGCCATTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCTCCGGTTGGCTTGTGGGGTCACTCTTCTTTGGGCGGCCATTGT  100

seq1  GCAGTCTTGCTAAAAATCATTGTCAGCTCTTTTTCATTGAGCCAATCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCTTGCTAAAAATCATTGTCAGCTCTTTTTCATTGAGCCAATCTAA  150

seq1  GAAATTTGATTGACATCTTTTTTTTTTTAAGATTTATTTTATTTATTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTGATTGACATCTTTTTTTTTTTAAGATTTATTTTATTTATTATA  200

seq1  TGTAAGTACACTGTAGCTGTCTTCAGACATCAGAAGAGGGCATCAGGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTACACTGTAGCTGTCTTCAGACATCAGAAGAGGGCATCAGGTCT  250

seq1  TGTTACAGATGGTTGTGAGCCACCATGTGGTTTCTGGGAATTGAACTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACAGATGGTTGTGAGCCACCATGTGGTTTCTGGGAATTGAACTCAG  300

seq1  GACCTCCGGAAGAGCAGTCAGTGCTCTTAACTGCTGAACCATCTCTCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCCGGAAGAGCAGTCAGTGCTCTTAACTGCTGAACCATCTCTCCAG  350

seq1  TCCAATTGACATCTTTTTGTGGTTTGAATTTTAATTTCTTTGAGTATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTGACATCTTTTTGTGGTTTGAATTTTAATTTCTTTGAGTATTAT  400

seq1  TGAAACTTTAGTATTTTGCTTCTTTATGAATTACCTTATTTAATTTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTTTAGTATTTTGCTTCTTTATGAATTACCTTATTTAATTTTTGT  450

seq1  TCCACTTTTCTATTTGGCTATTTGTGTTTCTCTCTTTTTGTATATATGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTTTCTATTTGGCTATTTGTGTTTCTCTCTTTTTGTATATATGTA  500

seq1  TGTGTGTATGCATGCATGTAATTATGTATGTATGTATGCAGGTATGTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATGCATGCATGTAATTATGTATGTATGTATGCAGGTATGTAAT  550

seq1  CTGCAGGATTTGTTTACTTATGATAGGATCCCATATAGCTTAGGATGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGATTTGTTTACTTATGATAGGATCCCATATAGCTTAGGATGG  598