BAC Information

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BAC

Clone NameB6Ng01-187H16
Chromosome8 (Build37)
Map Location 3,935,308 - 3,936,472
singlet/doubletsinglet
Overlap genenone
Upstream geneEG664801, EG209786, D630014A15Rik, Insr, A430078G23Rik, Arhgef18, Pex11c, 1700019B03Rik, Zfp358, Mcoln1, Pnpla6, C330021F23Rik, 2310057J16Rik, Xab2, Pcp2, Stxbp2, Retn, 1810033B17Rik, LOC664858, Trappc5, Fcer2a, Clec4g, Cd209a, LOC664870, Cd209e, Cd209d, Cd209b
Downstream geneCd209c, LOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g, B130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187H16.bB6Ng01-187H16.g
ACCGA012049GA012050
length1,1501,201
definitionB6Ng01-187H16.b B6Ng01-187H16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcaactctctgcagtacatagacctgctggcatccagagttac
aacttgatcagggatgaagaaccagtcttcctgtctctgaaagaactgat
cactgtccagatctcctgctcaggcagcattgctttctttacccagacat
ggtgggtccacaggttggccactgcaacttagtgtttaaatgagggccca
tagttcattctgctgtgctgactggtcctgaagacagaagctctgattta
cattacctaaagctctcctgaggacttcctgcagaatcgggtatcagact
caggctgggactggctttgttaagaggagaatggaaagccagaagaaagg
gtatggctgatggaactagtatagaggtcccatactagttgtgtgacagg
ctcaggtacaagatttccctgttcacagtatcttcatgtgtcagtctggg
agacactgagggcaatgtaattgttatttgtctctgtaacttaagatgtg
aatactgggttagagaatctgttcccctaccaagtgagacatggggaata
atttttcttccctataaatagggatggagttttcctgattaggtatacac
agcagaagacagagcagcaggctctggccactcttatgtacaggtgcatc
cttatcctatatgcaaattaactctgatggggtctgtgtgccatctgagg
gaaaaggtactatttgagtctggagctgtcctgccatgtaaatgtattgt
aaatgtaacccattttacttaaatatagaattctctataactagcttttt
tatataactgattttaaatattactttatatcaaacaaactttaatttta
catttaaacttgttttaagttaacctattttaggcctaactttaacaaca
tatccagaatgactttataaagggaactataacttgatctctatctccaa
tcctgtcctggtaataagttccttttgtactaacatggctgcaaacataa
ctctgaggcattaaagacataaagacagagtgactgctgatatttacttt
tatggctatacctttgttcaacaagtttacaatatatagtagctctcaca
gatagaattaattattagtaattaattaattattattcagaaatgaacac

gaattcttgccggcaagataatagctcgggcaagaagtggtgccgagaaa
cctgggaatttatcatcaccaggcgctgataggagacccccccctttcac
ggggcgggttcagaactacgggacactttacagctctgcaaggtacgtac
agtcttgaaatttctccagagttagacacccttttgattattttcacggc
gattattccttcccttttggtttcgttttgcttccaccactggaactgct
gactggttctcagtcgtggtcaggcctggacagcgaccagtattgctgac
tggttctcagtcacagtcaggcctggacagtgaccagtatgggaatctcc
cactctgtagtaaaggccttatggtcgatcttgaagcagtgtggcctgaa
aattgccactaagactatagagggatttgtcagggagatagactgtgtgg
caccatggtatgcttgctcagggtcattaactgtcgcctcatgggacaaa
ctgaaaggagatctagttagggaacagcagaacggcaaacttaaaggagg
gaccatgccattgtggaaactggtaagatcgtgcttaacagacgaggatt
gtaagcaaattgttgaggcagggcagaagatcctggaggaagttcaagac
agtctatcagaggcagagtggggagagagagtaagagttgaaacgaaaca
aggtgcactgaagaataaaggcctttccatggaccttgagcccaaggaaa
agataatgtagagaaagaatgcccggggtgagtttagaaaaggagaaaag
agaaaaacaaaggataatataaaatataaagatataaaggataatataaa
atataaagatacaaaggataatataaaatataaagatacaaaggataata
taaattaagtcaatttaccctcctctcgaggactttgactaaagagcagc
cttcattaaaggcttaaagatagctctcaggacactgtgcctctctcatt
atctggcagtattcccagagagagataagagtagagtctgaacatgagag
agaagaaaaatagtttaagaaaagcagttatccccttgtttgggatcttt
agcaaaaagagaaaaattgaaaatatagctaattcagctttctggaacag
aaaggaatgggagaacgtccttaactttctctctggctctccatatagtg
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_3935308_3936472
seq2: B6Ng01-187H16.b_51_1200 (reverse)

seq1  GTGTTCATTTCTAAAATAAATAAATAAATAAATAAATAAATAAATAAATT  50
      ||||||||||||  |||||   ||| ||| ||| | |||   ||| ||||
seq2  GTGTTCATTTCT-GAATAA--TAATTAATTAATTACTAA--TAATTAATT  45

seq1  CTAATCTTGTGAGAGCTACTAATATATTGTAAAC-TGTTGAAACAAAGGT  99
      || ||| ||||||||||||| ||||||||||||| ||||| |||||||||
seq2  CT-ATC-TGTGAGAGCTACT-ATATATTGTAAACTTGTTG-AACAAAGGT  91

seq1  AATTAAGCCATAAAAGTAAATAATCAGCAGTCACTTCTGTCCTTAATGTC  149
      |    |||||||||||||||| |||||||||||| ||||| ||| |||||
seq2  A---TAGCCATAAAAGTAAAT-ATCAGCAGTCAC-TCTGT-CTTTATGTC  135

seq1  CTTAATGCCTCAGAGTTATGTTTGCAGCCATGTTTAGTACAAAAGGAACT  199
       ||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTAATGCCTCAGAGTTATGTTTGCAGCCATG-TTAGTACAAAAGGAACT  184

seq1  TATTACCAGGACAGGATTGGAGATAGAGATCAAGTTATAGTTCCCTTTAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACCAGGACAGGATTGGAGATAGAGATCAAGTTATAGTTCCCTTTAT  234

seq1  AAAGTCATTCTGGATATGTTGTTAAAGTTAGGCCTAAAATAGGTTAACTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCATTCTGGATATGTTGTTAAAGTTAGGCCTAAAATAGGTTAACTT  284

seq1  AAAACAAGTTTAAATGTAAAATTAAAGTTTGTTTGATATAAAGTAATATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAGTTTAAATGTAAAATTAAAGTTTGTTTGATATAAAGTAATATT  334

seq1  TAAAATCAGTTATATAAAAAAGCTAGTTATAGAGAATTCTATATTTAAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCAGTTATATAAAAAAGCTAGTTATAGAGAATTCTATATTTAAGT  384

seq1  AAAATGGGTTACATTTACAATACATTTACATGGCAGGACAGCTCCAGACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGGTTACATTTACAATACATTTACATGGCAGGACAGCTCCAGACT  434

seq1  CAAATAGTACCTTTTCCCTCAGATGGCACACAGACCCCATCAGAGTTAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGTACCTTTTCCCTCAGATGGCACACAGACCCCATCAGAGTTAAT  484

seq1  TTGCATATAGGATAAGGATGCACCTGTACATAAGAGTGGCCAGAGCCTGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATATAGGATAAGGATGCACCTGTACATAAGAGTGGCCAGAGCCTGC  534

seq1  TGCTCTGTCTTCTGCTGTGTATACCTAATCAGGAAAACTCCATCCCTATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGTCTTCTGCTGTGTATACCTAATCAGGAAAACTCCATCCCTATT  584

seq1  TATAGGGAAGAAAAATTATTCCCCATGTCTCACTTGGTAGGGGAACAGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGGAAGAAAAATTATTCCCCATGTCTCACTTGGTAGGGGAACAGAT  634

seq1  TCTCTAACCCAGTATTCACATCTTAAGTTACAGAGACAAATAACAATTAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAACCCAGTATTCACATCTTAAGTTACAGAGACAAATAACAATTAC  684

seq1  ATTGCCCTCAGTGTCTCCCAGACTGACACATGAAGATACTGTGAACAGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCCTCAGTGTCTCCCAGACTGACACATGAAGATACTGTGAACAGGG  734

seq1  AAATCTTGTACCTGAGCCTGTCACACAACTAGTATGGGACCTCTATACTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTGTACCTGAGCCTGTCACACAACTAGTATGGGACCTCTATACTA  784

seq1  GTTCCATCAGCCATACCCTTTCTTCTGGCTTTCCATTCTCCTCTTAACAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATCAGCCATACCCTTTCTTCTGGCTTTCCATTCTCCTCTTAACAA  834

seq1  AGCCAGTCCCAGCCTGAGTCTGATACCCGATTCTGCAGGAAGTCCTCAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTCCCAGCCTGAGTCTGATACCCGATTCTGCAGGAAGTCCTCAGG  884

seq1  AGAGCTTTAGGTAATGTAAATCAGAGCTTCTGTCTTCAGGACCAGTCAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTTAGGTAATGTAAATCAGAGCTTCTGTCTTCAGGACCAGTCAGC  934

seq1  ACAGCAGAATGAACTATGGGCCCTCATTTAAACACTAAGTTGCAGTGGCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGAATGAACTATGGGCCCTCATTTAAACACTAAGTTGCAGTGGCC  984

seq1  AACCTGTGGACCCACCATGTCTGGGTAAAGAAAGCAATGCTGCCTGAGCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGTGGACCCACCATGTCTGGGTAAAGAAAGCAATGCTGCCTGAGCA  1034

seq1  GGAGATCTGGACAGTGATCAGTTCTTTCAGAGACAGGAAGACTGGTTCTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATCTGGACAGTGATCAGTTCTTTCAGAGACAGGAAGACTGGTTCTT  1084

seq1  CATCCCTGATCAAGTTGTAACTCTGGATGCCAGCAGGTCTATGTACTGCA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTGATCAAGTTGTAACTCTGGATGCCAGCAGGTCTATGTACTGCA  1134

seq1  GAGAGTTGAAGAATTC  1165
      ||||||||||||||||
seq2  GAGAGTTGAAGAATTC  1150