BAC Information

Click to search

BAC

Clone NameB6Ng01-188J21
Chromosome8 (Build37)
Map Location 75,982,876 - 76,138,276
singlet/doubletdoublet
Overlap genenone
Upstream gene1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a, Nwd1, Sin3b, F2rl3, Large, LOC100039001, LOC666134
Downstream geneCrry-ps, LOC666146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188J21.bB6Ng01-188J21.g
ACCGA012873GA012874
length1,1731,128
definitionB6Ng01-188J21.b B6Ng01-188J21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,982,876 - 75,984,019)(76,137,152 - 76,138,276)
sequence
gaattcttttatattcttgtcctttgcatatcttccttgaagaagtctat
tcaattcatttatttgcatgccttctttgaagaaattgctattcaaatca
tttgtccactaatgagcaagttaggttttcatatattttgttatcaaggg
gcttatttatatgttttggatattaactctttatgagatacatggtttac
caacatttttctctcatctagaatgtagcctttctttataatatgctatg
aagtttggaagtatgcggtctccaggtttgttttttcttaagattatgtt
gaatacttggggccttttatagatctaaattttaggagtacccatcaact
ttatttaaaaaatttctgggatttaataaggaccacgattgatctagaaa
tcactgtggacaaataaatattttaatataatttcaaatatgctatgcta
tgccttcatatagtattcatatctatcctctttcaacaaagtgttgtagt
ttgcaactgatacatctttagcttctttgctaattatggtattattttta
ggcaaggatcatttctcacctctttctcagttctcacagttgttgttggt
agtagatgttccttggcttatgtctaaatgtctcctgactactgcttcct
tcaccttgtattcttttcctccatgagtgaaaacacctttgtgtccacag
tccatagttcctctttatatgagaaccctacagttatattagggtctacc
atatttccatctgacttaatcttgatcatgtttaccaaggctcttcttcc
aaattagtttacagtaaagatagcaggggttatacctacatgatagttag
tatacacgtgataggaaatggatttacccaggagaaaaggtcccaggcat
gcatacctgtggtgtctctttgtttccattagcctctagcatttaaggag
aagtagaacataaaaagtagctctcaaggaagcctttctgtaaaccttta
tctttgatatatcatgatcctggcattcagtcaaactgtttagcccaaga
gcacataagtagctcaagcgatgtaggaagggatggtcctaacccagaga
atatattaatagttttctgatgatatttggaacttatagtaatttttcca
gcaattctcttgaatgtattttt
gaattctgaagactgtcagagacagagtctgtgagagaggcattagtcag
actttccttcagagtctccagcttggaaactcgcccatgatcaacttgat
ttttggatttctaaaaaccagaaagatgaaatagtctatcattgatctta
taagccatgcagtgggtggaagtttgttatggcaatacaggagactatga
gaatgcttcagccatgaagggcattctcagcaaaacattgctaataagga
gaggaggatttaagtgacaccaacattgagtagaaaggaaaggacagggt
gaggatggtcagagataaacacagagaattgagagctcagaaaatcatga
gctaccagcaggaatcaaatggtatcaaattttgcagaggtggcatatag
aatatagtctgtagagagaaaatcctgttcataccaaggtcactggtgac
tttcaatggaagcaatttcagggatctaaggagtcagtaatgtatgaaaa
agtcagcagaatattctttccgagatgtgtgattaacttgcttcctagga
gcatcctgaaggctaccttaggaatggtggtaacaggaaagtggccatgt
ttgtggtttgcatgggatttgaatttatttcaaagatttataggctggca
agcttgaggatctctactggctatttgtgttaggacaaagttgtcctagt
tctgggcaaagttgtcaacatagaagaaataaagacagtcaaatatcgaa
cagcagttggagttgagagcacgtagtatttctttgtacagagctgttgc
tgttaagcagctggtggtcaagtttttgatcctcccttgcagctaggtaa
agacatgatcttttcataccaatggaagaaggatagaaaagagtagaagt
aaggcagggaaatcctctatgccctgggggtatggcaagtgtgcatgccc
tttccagtttttctctcctcaacataactggaatcagaggagtcacattc
ttagtgatgacaggccacagaaactgaagagccagaagttcctgattcac
caataaaagtcttcaatcataggaaaaaaagctcacaatagaatgctaat
tgatgtgaaacaaagatggtcagccgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_75982876_75984019
seq2: B6Ng01-188J21.b_83_1222

seq1  TCCTTGAAGAAGTCTATTCAATTCATTTATTTGCATGCCTTCTTTGAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAAGAAGTCTATTCAATTCATTTATTTGCATGCCTTCTTTGAAGA  50

seq1  AATTGCTATTCAAATCATTTGTCCACTAATGAGCAAGTTAGGTTTTCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTATTCAAATCATTTGTCCACTAATGAGCAAGTTAGGTTTTCATA  100

seq1  TATTTTGTTATCAAGGGGCTTATTTATATGTTTTGGATATTAACTCTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTTATCAAGGGGCTTATTTATATGTTTTGGATATTAACTCTTTA  150

seq1  TGAGATACATGGTTTACCAACATTTTTCTCTCATCTAGAATGTAGCCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATACATGGTTTACCAACATTTTTCTCTCATCTAGAATGTAGCCTTT  200

seq1  CTTTATAATATGCTATGAAGTTTGGAAGTATGCGGTCTCCAGGTTTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATAATATGCTATGAAGTTTGGAAGTATGCGGTCTCCAGGTTTGTTT  250

seq1  TTTCTTAAGATTATGTTGAATACTTGGGGCCTTTTATAGATCTAAATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAAGATTATGTTGAATACTTGGGGCCTTTTATAGATCTAAATTTT  300

seq1  AGGAGTACCCATCAACTTTATTTAAAAAATTTCTGGGATTTAATAAGGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTACCCATCAACTTTATTTAAAAAATTTCTGGGATTTAATAAGGAC  350

seq1  CACGATTGATCTAGAAATCACTGTGGACAAATAAATATTTTAATATAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGATTGATCTAGAAATCACTGTGGACAAATAAATATTTTAATATAATT  400

seq1  TCAAATATGCTATGCTATGCCTTCATATAGTATTCATATCTATCCTCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATATGCTATGCTATGCCTTCATATAGTATTCATATCTATCCTCTTT  450

seq1  CAACAAAGTGTTGTAGTTTGCAACTGATACATCTTTAGCTTCTTTGCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAGTGTTGTAGTTTGCAACTGATACATCTTTAGCTTCTTTGCTAA  500

seq1  TTATGGTATTATTTTTAGGCAAGGATCATTTCTCACCTCTTTCTCAGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTATTATTTTTAGGCAAGGATCATTTCTCACCTCTTTCTCAGTTC  550

seq1  TCACAGTTGTTGTTGGTAGTAGATGTTCCTTGGCTTATGTCTAAATGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTTGTTGTTGGTAGTAGATGTTCCTTGGCTTATGTCTAAATGTCT  600

seq1  CCTGACTACTGCTTCCTTCACCTTGTATTCTTTTCCTCCATGAGTGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTACTGCTTCCTTCACCTTGTATTCTTTTCCTCCATGAGTGAAAA  650

seq1  CACCTTTGTGTCCACAGTCCATAGTTCCTCTTTATATGAGAACCCTACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTGTGTCCACAGTCCATAGTTCCTCTTTATATGAGAACCCTACAG  700

seq1  TTATATTAGGGTCTACCATATTTCCATCTGACTTAATCTTGATCATGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTAGGGTCTACCATATTTCCATCTGACTTAATCTTGATCATGTTT  750

seq1  ACCAAGGCTCTTCTTCCAAATTAGTTTACAGTAAAGATAGCAGGGGTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGGCTCTTCTTCCAAATTAGTTTACAGTAAAGATAGCAGGGGTTAT  800

seq1  ACCTACATGATAGTTAGTATACACGTGATAGGAAATGGATTTACCCAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACATGATAGTTAGTATACACGTGATAGGAAATGGATTTACCCAGGA  850

seq1  GAAAAGGTCCCAGGCATGCATACCTGTGGTGTCTCTTTGTTTCCATTAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGTCCCAGGCATGCATACCTGTGGTGTCTCTTTGTTTCCATTAGC  900

seq1  CTCTAGCATTTAAGGAGAAGTAGAACATAAAAAAGTAGC-CCCAAGGAAG  949
      |||||||||||||||||||||||||||| |||||||||| | ||||||| 
seq2  CTCTAGCATTTAAGGAGAAGTAGAACAT-AAAAAGTAGCTCTCAAGGAA-  948

seq1  GCCTTTCTGTAAACCTTTTATCTTTGATATTATCATGATCCTGGGCATTC  999
      ||||||||||||||| ||||||||||||| |||||||||||| |||||||
seq2  GCCTTTCTGTAAACC-TTTATCTTTGATA-TATCATGATCCT-GGCATTC  995

seq1  AGTCAAAACTGTTTAGCCAAAGAGCACATAAGTAGCTCAAGCAGATGTAG  1049
      |||| ||||||||||||| ||||||||||||||||||||||| |||||||
seq2  AGTC-AAACTGTTTAGCCCAAGAGCACATAAGTAGCTCAAGC-GATGTAG  1043

seq1  GAAGGGATGTTCCCTACACAAGAGAATATA-TAATAGTTTTCTGGATGAT  1098
      ||||||||| | ||||  | |||||||||| |||||||||||| ||||||
seq2  GAAGGGATGGT-CCTAACCCAGAGAATATATTAATAGTTTTCT-GATGAT  1091

seq1  ATT--GAAATTATAGT-ATTTTTCCAGCATATCTCCTTGATGTATTTTT  1144
      |||  ||| ||||||| ||||||||||||  |||| |  ||||||||||
seq2  ATTTGGAACTTATAGTAATTTTTCCAGCAATTCTCTTGAATGTATTTTT  1140

seq1: chr8_76137152_76138276
seq2: B6Ng01-188J21.g_66_1193 (reverse)

seq1  TCCGGCTGACCATCTTTGTTTCACACTCATTTAGCAATCTATTGTG-GCT  49
      ||||||||||||||||||||||||| ||| |||||| ||||||||| |||
seq2  TCCGGCTGACCATCTTTGTTTCACA-TCAATTAGCATTCTATTGTGAGCT  49

seq1  TTTTTT-CTATTAATGAAAGAC-TTTAT--GTGATTCAGGAAC-TCTGGC  94
      |||||| |||| | || ||||| |||||  |||| |||||||| ||||||
seq2  TTTTTTCCTATGATTG-AAGACTTTTATTGGTGAATCAGGAACTTCTGGC  98

seq1  TCCTTCAGTTTCTGTGGCCTGTCATCACTAAGAATTGTGACTCCTCTGAT  144
      | |||||||||||||||||||||||||||||||| |||||||||||||||
seq2  T-CTTCAGTTTCTGTGGCCTGTCATCACTAAGAA-TGTGACTCCTCTGAT  146

seq1  TCCAGTTTATGTTGAGGAGAGAAAAACTGGAAAAGGCATGCACACTTGCC  194
      ||||| ||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCCAG-TTATGTTGAGGAGAGAAAAACTGGAAAGGGCATGCACACTTGCC  195

seq1  ATA-CCCCAGGGCATAGAGGA-TTCCCTGCCTTACTTCTACTCTTTTCTA  242
      ||| ||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATACCCCCAGGGCATAGAGGATTTCCCTGCCTTACTTCTACTCTTTTCTA  245

seq1  TCCTTCTTCCATTGGTATGAAAAGATCATGTCTTTACCTAGCTGCAAGGG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTTCCATTGGTATGAAAAGATCATGTCTTTACCTAGCTGCAAGGG  295

seq1  AGGATCAAAAACTTGACCACCAGCTGCTTAACAGCAACAGCTCTGTACAA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCAAAAACTTGACCACCAGCTGCTTAACAGCAACAGCTCTGTACAA  345

seq1  AGAAATACTACGTGCTCTCAACTCCAACTGCTGTTCGATATTTGACTGTC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATACTACGTGCTCTCAACTCCAACTGCTGTTCGATATTTGACTGTC  395

seq1  TTTATTTCTTCTATGTTGACAACTTTGCCCAGAACTAGGACAACTTTGTC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCTTCTATGTTGACAACTTTGCCCAGAACTAGGACAACTTTGTC  445

seq1  CTAACACAAATAGCCAGTAGAGATCCTCAAGCTTGCCAGCCTATAAATCT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACACAAATAGCCAGTAGAGATCCTCAAGCTTGCCAGCCTATAAATCT  495

seq1  TTGAAATAAATTCAAATCCCATGCAAACCACAAACATGGCCACTTTCCTG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATAAATTCAAATCCCATGCAAACCACAAACATGGCCACTTTCCTG  545

seq1  TTACCACCATTCCTAAGGTAGCCTTCAGGATGCTCCTAGGAAGCAAGTTA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCACCATTCCTAAGGTAGCCTTCAGGATGCTCCTAGGAAGCAAGTTA  595

seq1  ATCACACATCTCGGAAAGAATATTCTGCTGACTTTTTCATACATTACTGA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACACATCTCGGAAAGAATATTCTGCTGACTTTTTCATACATTACTGA  645

seq1  CTCCTTAGATCCCTGAAATTGCTTCCATTGAAAGTCACCAGTGACCTTGG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTAGATCCCTGAAATTGCTTCCATTGAAAGTCACCAGTGACCTTGG  695

seq1  TATGAACAGGATTTTCTCTCTACAGACTATATTCTATATGCCACCTCTGC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAACAGGATTTTCTCTCTACAGACTATATTCTATATGCCACCTCTGC  745

seq1  AAAATTTGATACCATTTGATTCCTGCTGGTAGCTCATGATTTTCTGAGCT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTGATACCATTTGATTCCTGCTGGTAGCTCATGATTTTCTGAGCT  795

seq1  CTCAATTCTCTGTGTTTATCTCTGACCATCCTCACCCTGTCCTTTCCTTT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTCTCTGTGTTTATCTCTGACCATCCTCACCCTGTCCTTTCCTTT  845

seq1  CTACTCAATGTTGGTGTCACTTAAATCCTCCTCTCCTTATTAGCAATGTT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCAATGTTGGTGTCACTTAAATCCTCCTCTCCTTATTAGCAATGTT  895

seq1  TTGCTGAGAATGCCCTTCATGGCTGAAGCATTCTCATAGTCTCCTGTATT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGAGAATGCCCTTCATGGCTGAAGCATTCTCATAGTCTCCTGTATT  945

seq1  GCCATAACAAACTTCCACCCACTGCATGGCTTATAAGATCAATGATAGAC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAACAAACTTCCACCCACTGCATGGCTTATAAGATCAATGATAGAC  995

seq1  TATTTCATCTTTCTGGTTTTTAGAAATCCAAAAATCAAGTTGATCATGGG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCATCTTTCTGGTTTTTAGAAATCCAAAAATCAAGTTGATCATGGG  1045

seq1  CGAGTTTCCAAGCTGGAGACTCTGAAGGAAAGTCTGACTAATGCCTCTCT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTTTCCAAGCTGGAGACTCTGAAGGAAAGTCTGACTAATGCCTCTCT  1095

seq1  CACAGACTCTGTCTCTGACAGTCTTCAGAATTC  1125
      |||||||||||||||||||||||||||||||||
seq2  CACAGACTCTGTCTCTGACAGTCTTCAGAATTC  1128