BAC Information

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BAC

Clone NameB6Ng01-189A17
Chromosome8 (Build37)
Map Location 64,054,057 - 64,206,624
singlet/doubletdoublet
Overlap genePalld, LOC100040872
Upstream geneMfap3l, LOC100040679, 2700029M09Rik, Clcn3, B230317F23Rik, Nek1, Sh3rf1, EG664975, Cbr4
Downstream geneBC013672, Anxa10, LOC100040775, LOC384830, LOC100040804, LOC665267
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189A17.bB6Ng01-189A17.g
ACCGA013173GA013174
length1,0271,119
definitionB6Ng01-189A17.b B6Ng01-189A17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,205,606 - 64,206,624)(64,054,057 - 64,055,170)
sequence
gaattcacagtagagcagggttcccctcagcctcactttgaaatacagag
agcgaggagtgaaacagggagccacttgatgtgaagcatctcctcagaat
tcgagccaagcacttcctgctgctgccagcctatgagcctggggtgcgtg
gcataatcagacttttaagttagagtttgtaggaggtccttgacactgag
ggggattgtccaaaaaacggaatatatacattaaaaacttcactcaaaac
ctagcccagaataatatgaatacacttttctgtaaagctttaaatatttc
agttctttttaccacctatgttctacaactccttatgaccaaaaagagaa
actgtgaactgtggccacactatcctctccacagtggccaaagccttctg
tcaaaagcaagtttttaaatatgtaaatataaatctataaccatctttta
gattgatttttgaaggagcctgtgcttcctcacaacctagaaggaacctg
agctccttagatgcagttcctcgggcctctggctggccttcctcctccat
tagcctgtaggcaggtcagtagacacctgtgtccccaggctcctcaatgg
gagctcaagcacagcgagccccttggtgatcgaacaaacacctgaatgaa
taaatcagtgaatgaatatggctatagaacctaaccctatacacattgtt
tccaattaatgcaaagtgattatcacagcctgtttatggccttgaagtct
gacagctggtggcactgggattagttctccatccatacccttccttctat
tgtggggggatttagcacacagactaattcttcaagattggctctccagt
ttccctggactccctattgtgcagggactacctgggatgctttgcagcta
tgccagagattagaaagtgggagtcaaggaaacttcgtttaaaacatgtt
tattacccagagctgaagaacttgatgatagatggagatcagagccacgg
aaggggaaattggtaatggggaggatt
agcatgacttgaggtcatgaccagtcacaccctgacttcctgcttttgac
gtttcctcccttcacatgctgagtgtcctctcattttcctcaaattagtt
ttgcatccgtggtttccaaaggctgttggaaagctgatctatgcctaaac
ttgtgggccattttttttttttttttttttggccaggttgcaagtctgtg
cctaatagctcttgacagtagctctagtttctagctgttgacaacccaga
tcaatgtgttgctccccacagcttacccacagttcagagccctcaagcac
aggccctaataccagtcagagtagctggctcctggcacaaaaatgagctt
agagactgtgtggggagaatctatcgggtttttggtcccccaacccaacc
ccaaggatttgctttacagtctcttgcttctctagactccatttctttgc
aagtaaaaggaatcttcaggctaaattctagcttggagatcccgagaaac
tggtgtagcaatgcgagtaataacccgagctcgatgtggtggcttactcc
taaattctagcactcagggagccgaggcaggtggatctctgggacttcta
ggccagaatggtctacacagcaagttccaggccagccaggcttacttagt
agcccttgtcttgaaaacagaacaagaaagaaccatcctgaataacactg
actgggaaggataggctcaaactcacttctgctaatttaaatattcctgg
aacttagttttctttctgatagtttccctttgaaaataaaagattttatt
gtgtgcacatgtgtgcaatgtattatgtggcatgtgttatgacccatgga
agccagctcagagcatcagatccctggtgttgctgttgtatgtaagcttg
ggaaatgagcataatggttcttgggacctagcctcaggctctctggagta
ggcaggcaagcacgcagcacagacccagctcttctaggttccctttcttg
atattttttcaatatgactaactaaaacacctcagtgtggaaattccagt
gcaaaattgaaatcttcctagattacaagtcttacacagtcacttccttg
gtaatttttttccgaaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_64205606_64206624
seq2: B6Ng01-189A17.b_45_1071 (reverse)

seq1  AATCCTCCCCAT--CCCATTTCCCC-TCCGT-GCTCTGATCTCCATCTTT  46
      ||||||||||||  || |||||||| ||||| |||||||||||||||| |
seq2  AATCCTCCCCATTACCAATTTCCCCTTCCGTGGCTCTGATCTCCATCTAT  50

seq1  CATCAAGTTC-TCAGCTCTGGGT-ATAAACATGTTTT-AACGAAGTTTCC  93
      |||||||||| |||||||||||| ||||||||||||| ||||||||||||
seq2  CATCAAGTTCTTCAGCTCTGGGTAATAAACATGTTTTAAACGAAGTTTCC  100

seq1  -TGACTCCCACTTTCTAATCTCTGGCATAGCTGCAAAGCAT-CCAGGTAG  141
       |||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTGACTCCCACTTTCTAATCTCTGGCATAGCTGCAAAGCATCCCAGGTAG  150

seq1  TCCCTGCACAATAGGGAGTCCAGGGAAACTGGAGAAGCCAATCTTGAAGA  191
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCCCTGCACAATAGGGAGTCCAGGGAAACTGGAG-AGCCAATCTTGAAGA  199

seq1  ATTAGTCTGTGTGCTAAATCCCCCCACAATAGAAGGAAGGGTATGGATGG  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTCTGTGTGCTAAATCCCCCCACAATAGAAGGAAGGGTATGGATGG  249

seq1  AGAACTAATCCCAGTGCCACCAGCTGTCAGACTTCAAGGCCATAAACAGG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTAATCCCAGTGCCACCAGCTGTCAGACTTCAAGGCCATAAACAGG  299

seq1  CTGTGATAATCACTTTGCATTAATTGGAAACAATGTGTATAGGGTTAGGT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATAATCACTTTGCATTAATTGGAAACAATGTGTATAGGGTTAGGT  349

seq1  TCTATAGCCATATTCATTCACTGATTTATTCATTCAGGTGTTTGTTCGAT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGCCATATTCATTCACTGATTTATTCATTCAGGTGTTTGTTCGAT  399

seq1  CACCAAGGGGCTCGCTGTGCTTGAGCTCCCATTGAGGAGCCTGGGGACAC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGGGGCTCGCTGTGCTTGAGCTCCCATTGAGGAGCCTGGGGACAC  449

seq1  AGGTGTCTACTGACCTGCCTACAGGCTAATGGAGGAGGAAGGCCAGCCAG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTCTACTGACCTGCCTACAGGCTAATGGAGGAGGAAGGCCAGCCAG  499

seq1  AGGCCCGAGGAACTGCATCTAAGGAGCTCAGGTTCCTTCTAGGTTGTGAG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCGAGGAACTGCATCTAAGGAGCTCAGGTTCCTTCTAGGTTGTGAG  549

seq1  GAAGCACAGGCTCCTTCAAAAATCAATCTAAAAGATGGTTATAGATTTAT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCACAGGCTCCTTCAAAAATCAATCTAAAAGATGGTTATAGATTTAT  599

seq1  ATTTACATATTTAAAAACTTGCTTTTGACAGAAGGCTTTGGCCACTGTGG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACATATTTAAAAACTTGCTTTTGACAGAAGGCTTTGGCCACTGTGG  649

seq1  AGAGGATAGTGTGGCCACAGTTCACAGTTTCTCTTTTTGGTCATAAGGAG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATAGTGTGGCCACAGTTCACAGTTTCTCTTTTTGGTCATAAGGAG  699

seq1  TTGTAGAACATAGGTGGTAAAAAGAACTGAAATATTTAAAGCTTTACAGA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGAACATAGGTGGTAAAAAGAACTGAAATATTTAAAGCTTTACAGA  749

seq1  AAAGTGTATTCATATTATTCTGGGCTAGGTTTTGAGTGAAGTTTTTAATG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTATTCATATTATTCTGGGCTAGGTTTTGAGTGAAGTTTTTAATG  799

seq1  TATATATTCCGTTTTTTGGACAATCCCCCTCAGTGTCAAGGACCTCCTAC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTCCGTTTTTTGGACAATCCCCCTCAGTGTCAAGGACCTCCTAC  849

seq1  AAACTCTAACTTAAAAGTCTGATTATGCCACGCACCCCAGGCTCATAGGC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTAACTTAAAAGTCTGATTATGCCACGCACCCCAGGCTCATAGGC  899

seq1  TGGCAGCAGCAGGAAGTGCTTGGCTCGAATTCTGAGGAGATGCTTCACAT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCAGCAGGAAGTGCTTGGCTCGAATTCTGAGGAGATGCTTCACAT  949

seq1  CAAGTGGCTCCCTGTTTCACTCCTCGCTCTCTGTATTTCAAAGTGAGGCT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGCTCCCTGTTTCACTCCTCGCTCTCTGTATTTCAAAGTGAGGCT  999

seq1  GAGGGGAACCCTGCTCTACTGTGAATTC  1019
      ||||||||||||||||||||||||||||
seq2  GAGGGGAACCCTGCTCTACTGTGAATTC  1027

seq1: chr8_64054057_64055170
seq2: B6Ng01-189A17.g_76_1194

seq1  AGCATGACTTGAGGTCATGACCAGTCACACCCTGACTTCCTGCTTTTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGACTTGAGGTCATGACCAGTCACACCCTGACTTCCTGCTTTTGAC  50

seq1  GTTTCCTCCCTTCACATGCTGAGTGTCCTCTCATTTTCCTCAAATTAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTCCCTTCACATGCTGAGTGTCCTCTCATTTTCCTCAAATTAGTT  100

seq1  TTGCATCCGTGGTTTCCAAAGGCTGTTGGAAAGCTGATCTATGCCTAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATCCGTGGTTTCCAAAGGCTGTTGGAAAGCTGATCTATGCCTAAAC  150

seq1  TTGTGGGCCATTTTTTTTTTTTTTTTTTTTGGCCAGGTTGCAAGTCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGCCATTTTTTTTTTTTTTTTTTTTGGCCAGGTTGCAAGTCTGTG  200

seq1  CCTAATAGCTCTTGACAGTAGCTCTAGTTTCTAGCTGTTGACAACCCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATAGCTCTTGACAGTAGCTCTAGTTTCTAGCTGTTGACAACCCAGA  250

seq1  TCAATGTGTTGCTCCCCACAGCTTACCCACAGTTCAGAGCCCTCAAGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTGTTGCTCCCCACAGCTTACCCACAGTTCAGAGCCCTCAAGCAC  300

seq1  AGGCCCTAATACCAGTCAGAGTAGCTGGCTCCTGGCACAAAAATGAGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTAATACCAGTCAGAGTAGCTGGCTCCTGGCACAAAAATGAGCTT  350

seq1  AGAGACTGTGTGGGGAGAATCTATCGGGTTTTTGGTCCCCCAACCCAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTGTGTGGGGAGAATCTATCGGGTTTTTGGTCCCCCAACCCAACC  400

seq1  CCAAGGATTTGCTTTACAGTCTCTTGCTTCTCTAGACTCCATTTCTTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGATTTGCTTTACAGTCTCTTGCTTCTCTAGACTCCATTTCTTTGC  450

seq1  AAGTAAAAGGAATCTTCAGGCTAAATTCTAGCTTGGAGATCCCGAGAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAAGGAATCTTCAGGCTAAATTCTAGCTTGGAGATCCCGAGAAAC  500

seq1  TGGTGTAGCAATGCGAGTAATAACCCGAGCTCGATGTGGTGGCTTACTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTAGCAATGCGAGTAATAACCCGAGCTCGATGTGGTGGCTTACTCC  550

seq1  TAAATTCTAGCACTCAGGGAGCCGAGGCAGGTGGATCTCTGGGACTTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCTAGCACTCAGGGAGCCGAGGCAGGTGGATCTCTGGGACTTCTA  600

seq1  GGCCAGAATGGTCTACACAGCAAGTTCCAGGCCAGCCAGGCTTACTTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGAATGGTCTACACAGCAAGTTCCAGGCCAGCCAGGCTTACTTAGT  650

seq1  AGCCCTTGTCTTGAAAACAGAACAAGAAAGAACCATCCTGAATAACACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTGTCTTGAAAACAGAACAAGAAAGAACCATCCTGAATAACACTG  700

seq1  ACTGGGAAGGATAGGCTCAAACTCACTTCTGCTAA-TTAAATATTCCTGG  749
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACTGGGAAGGATAGGCTCAAACTCACTTCTGCTAATTTAAATATTCCTGG  750

seq1  AACTTAG-TTTCTTTCTGATAGTTTCCCTTTGAAAATAAAAGATTT--AT  796
      ||||||| ||||||||||||||||||||||||||||||||||||||   |
seq2  AACTTAGTTTTCTTTCTGATAGTTTCCCTTTGAAAATAAAAGATTTTATT  800

seq1  GTGTGCACATGTGTGCAATGTA-TATGTGGCATGTG-TATGACCCATGGA  844
      |||||||||||||||||||||| ||||||||||||| |||||||||||||
seq2  GTGTGCACATGTGTGCAATGTATTATGTGGCATGTGTTATGACCCATGGA  850

seq1  AGCCAGCTCAGAGCATCAGATCCCTGGTGTTGCTGTTGTATGT-AGCT--  891
      ||||||||||||||||||||||||||||||||||||||||||| ||||  
seq2  AGCCAGCTCAGAGCATCAGATCCCTGGTGTTGCTGTTGTATGTAAGCTTG  900

seq1  GGGAATGAGCAT-ATGGTTC-TGGGAACTAGCCTCAGGCTCTCTGGAGGA  939
      || ||||||||| ||||||| ||||| ||||||||||||||||||||| |
seq2  GGAAATGAGCATAATGGTTCTTGGGACCTAGCCTCAGGCTCTCTGGAGTA  950

seq1  -GCA-GCAAGCACGCAGCCACAGACCCAGCTC-TCTA-GTTCCC-TTCCT  984
       ||| |||||||||||| |||||||||||||| |||| |||||| ||| |
seq2  GGCAGGCAAGCACGCAG-CACAGACCCAGCTCTTCTAGGTTCCCTTTCTT  999

seq1  GATATTTTTTCAATATGACTAAATAAAACA-CTCAGTGTTGGAAATTCAA  1033
      |||||||||||||||||||||| ||||||| ||||||| ||||||||| |
seq2  GATATTTTTTCAATATGACTAACTAAAACACCTCAGTG-TGGAAATTCCA  1048

seq1  GTGCAAAAATGAAAATTCTTTCCTAGAATTACCAGTCTTTACACAGTTCC  1083
      |||||||| |||||  || ||||||| ||||| |||| |||||||||  |
seq2  GTGCAAAATTGAAA--TC-TTCCTAG-ATTACAAGTC-TTACACAGT--C  1091

seq1  ACTTCTCTGGGAAATTTTTTTTCCAGAAATT  1114
      ||||| || || |||||||||  | ||||||
seq2  ACTTC-CTTGGTAATTTTTTT--CCGAAATT  1119