BAC Information

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BAC

Clone NameB6Ng01-189C03
Chromosome8 (Build37)
Map Location 110,049,084 - 110,186,201
singlet/doubletdoublet
Overlap geneWwp2, Psmd7
Upstream geneCdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1, Nob1, LOC100042812
Downstream geneLOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189C03.bB6Ng01-189C03.g
ACCGA013240GA013241
length1,131598
definitionB6Ng01-189C03.b B6Ng01-189C03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,185,095 - 110,186,201)(110,049,084 - 110,049,680)
sequence
gaattcaagtagttattattattgaattcaagtagtcattattctcttct
ttcaagcatctactggttattaactacatggcaggcacatgctagatatt
aaaaatgagagaagtagcctccgtcctcagggctctgataaggtagagga
gcttaaagccagcacttgcggtgagccttgatgccctttagaagaaacag
gattggaatatcacagtgccgtagaaagtgattggttctgctagaaggat
aaagaaacctagctagttcccaaggctcaggtcacaagctggctcttgac
taagagttggtgaaacaaactctgttagcagatgccaaaggagggactag
atctcaaagttcaacaggataaaatctgtaagatttggccataggttata
ggtagaaagcatgagaggggcggaatatgatcacagcttctagtactgat
gttgctaccacatccattgctgttcaccactcccatacctgcccggcacc
aaaccaagtcaccgaacacgaaggaaaaccagaagccagtgctactctct
gggtgcaatgtgtctctgccaagacctggtgagatctggctgcaatgtag
caagagttggcgcattaagagatcagtgtcctttctcttgagaccacatt
agttcttatcaattctgatcggttgtgatgaagtgagttcctacggctgt
ctctgtctgtcttctgcgcatgctcactggccattcttcacgccccacgt
gtcatttgccgtattagagcagcatgagaggcccttgccagatccagctt
cccgatctttgaagttctacctcccagaagcaagcgctaaataaaacctt
ttacttccttcaatgaccctgtctgtcttacagttcgtcctgtgatagct
tacctaaaagcagacaacactaggaagaagatgaaagagaggtgcttgag
gaggagcttgttgggtaggcaggctgctgtctatgggagagccacaaaga
tgcttctaagggaagccatagctgaggtggtatctgagggcttataagat
gggtaagtaaaatatatcccggaaaggagaaccagagcctaaacctttgc
agaacaaactctgggtgtgtgcgggaacaca
gaattcctgcaccatagaccatcagtgtcagtgggaaacccccctcaaac
tgcttcctccggttggcttgtggggtcactcttctttgggcggccattgt
gcagtcttgctaaaaatcattgtcagctctttttcattgagccaatctaa
gaaatttgattgacatctttttttttttaagatttattttatttattata
tgtaagtacactgtagctgtcttcagacatcagaagagggcatcaggtct
tgttacagatggttgtgagccaccatgtggtttctgggaattgaactcag
gacctccggaagagcagtcagtgctcttaactgctgaaccatctctccag
tccaattgacatctttttgtggtttgaattttaatttctttgagtattat
tgaaactttagtattttgcttctttatgaattaccttatttaatttttgt
tccacttttctatttggctatttgtgtttctctctttttgtatatatgta
tgtgtgtatgcatgcatgtaattatgtatgtatgtatgcaggtatgtaat
ctgcaggatttgtttactttatgataggatcccatatagcttaggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_110185095_110186201
seq2: B6Ng01-189C03.b_45_1175 (reverse)

seq1  TGTG-TCCCGCACA---CCAG-GTTTGTTCTGC-AAGGTTTA-GCTCTGG  43
      |||| |||||||||   |||| ||||||||||| |||||||| |||||||
seq2  TGTGTTCCCGCACACACCCAGAGTTTGTTCTGCAAAGGTTTAGGCTCTGG  50

seq1  TTCTTCCTTCCGGGATATATTTTCCT--CCCATCTTCTTAGCCCTCAGAT  91
      |||| | |||||||||||||||| ||  |||||||| | |||||||||||
seq2  TTCTCCTTTCCGGGATATATTTTACTTACCCATCTTATAAGCCCTCAGAT  100

seq1  ACCACCTCAGCTATGGCTT-CCTTAGAAGCATCTTTTGTGGCTCTCCCAT  140
      ||||||||||||||||||| ||||||||||||| ||||||||||||||||
seq2  ACCACCTCAGCTATGGCTTCCCTTAGAAGCATC-TTTGTGGCTCTCCCAT  149

seq1  AGACAGCAGCCTGCCTACCCA--CAGCTCCTCCTC-AGCACCTCTCTTTC  187
      |||||||||||||||||||||   ||||||||||| ||||||||||||||
seq2  AGACAGCAGCCTGCCTACCCAACAAGCTCCTCCTCAAGCACCTCTCTTTC  199

seq1  ATCTTCTTCCTAGTGTTGTCTGC-TTTAGGT-AGCTATCACA-GACG-AC  233
      ||||||||||||||||||||||| ||||||| |||||||||| |||| ||
seq2  ATCTTCTTCCTAGTGTTGTCTGCTTTTAGGTAAGCTATCACAGGACGAAC  249

seq1  TGT-AGACAGACAGGGTCATTGAAGG-AGTAAA--GGTTTATTTAGCGCT  279
      ||| |||||||||||||||||||||| ||||||  | |||||||||||||
seq2  TGTAAGACAGACAGGGTCATTGAAGGAAGTAAAAGGTTTTATTTAGCGCT  299

seq1  TGCTTCT-GGAGGTAG-ACTTC-AAGATCGGGAAGCTGGATCTGGCAAGG  326
      ||||||| |||||||| ||||| |||||||||||||||||||||||||||
seq2  TGCTTCTGGGAGGTAGAACTTCAAAGATCGGGAAGCTGGATCTGGCAAGG  349

seq1  GCCTCTCATGCTGCTCTAATACGGCAAATGACACGTGGGGCGTG-AGAAT  375
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCCTCTCATGCTGCTCTAATACGGCAAATGACACGTGGGGCGTGAAGAAT  399

seq1  GGCCAGTGAGCATGCGCAGAAGACAGACAGAGACAGCCGTAGGAACTCAC  425
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGTGAGCATGCGCAGAAGACAGACAGAGACAGCCGTAGGAACTCAC  449

seq1  TTCATCACAACCGATCAGAATTGATAAGAACTAATGTGGTCTCAAGAGAA  475
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCACAACCGATCAGAATTGATAAGAACTAATGTGGTCTCAAGAGAA  499

seq1  AGGACACTGATCTCTTAATGCGCCAACTCTTGCTACATTGCAGCCAGATC  525
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACTGATCTCTTAATGCGCCAACTCTTGCTACATTGCAGCCAGATC  549

seq1  TCACCAGGTCTTGGCAGAGACACATTGCACCCAGAGAGTAGCACTGGCTT  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGGTCTTGGCAGAGACACATTGCACCCAGAGAGTAGCACTGGCTT  599

seq1  CTGGTTTTCCTTCGTGTTCGGTGACTTGGTTTGGTGCCGGGCAGGTATGG  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTTCCTTCGTGTTCGGTGACTTGGTTTGGTGCCGGGCAGGTATGG  649

seq1  GAGTGGTGAACAGCAATGGATGTGGTAGCAACATCAGTACTAGAAGCTGT  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGTGAACAGCAATGGATGTGGTAGCAACATCAGTACTAGAAGCTGT  699

seq1  GATCATATTCCGCCCCTCTCATGCTTTCTACCTATAACCTATGGCCAAAT  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATATTCCGCCCCTCTCATGCTTTCTACCTATAACCTATGGCCAAAT  749

seq1  CTTACAGATTTTATCCTGTTGAACTTTGAGATCTAGTCCCTCCTTTGGCA  775
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGATTTTATCCTGTTGAACTTTGAGATCTAGTCCCTCCTTTGGCA  799

seq1  TCTGCTAACAGAGTTTGTTTCACCAACTCTTAGTCAAGAGCCAGCTTGTG  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTAACAGAGTTTGTTTCACCAACTCTTAGTCAAGAGCCAGCTTGTG  849

seq1  ACCTGAGCCTTGGGAACTAGCTAGGTTTCTTTATCCTTCTAGCAGAACCA  875
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAGCCTTGGGAACTAGCTAGGTTTCTTTATCCTTCTAGCAGAACCA  899

seq1  ATCACTTTCTACGGCACTGTGATATTCCAATCCTGTTTCTTCTAAAGGGC  925
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTTTCTACGGCACTGTGATATTCCAATCCTGTTTCTTCTAAAGGGC  949

seq1  ATCAAGGCTCACCGCAAGTGCTGGCTTTAAGCTCCTCTACCTTATCAGAG  975
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGCTCACCGCAAGTGCTGGCTTTAAGCTCCTCTACCTTATCAGAG  999

seq1  CCCTGAGGACGGAGGCTACTTCTCTCATTTTTAATATCTAGCATGTGCCT  1025
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGGACGGAGGCTACTTCTCTCATTTTTAATATCTAGCATGTGCCT  1049

seq1  GCCATGTAGTTAATAACCAGTAGATGCTTGAAAGAAGAGAATAATGACTA  1075
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTAGTTAATAACCAGTAGATGCTTGAAAGAAGAGAATAATGACTA  1099

seq1  CTTGAATTCAATAATAATAACTACTTGAATTC  1107
      ||||||||||||||||||||||||||||||||
seq2  CTTGAATTCAATAATAATAACTACTTGAATTC  1131

seq1: chr8_110049084_110049680
seq2: B6Ng01-189C03.g_70_667

seq1  GAATTCCTGCACCATAGACCATCAGTGTCAGTGGGAAACCCCCCTCAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCACCATAGACCATCAGTGTCAGTGGGAAACCCCCCTCAAAC  50

seq1  TGCTTCCTCCGGTTGGCTTGTGGGGTCACTCTTCTTTGGGCGGCCATTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCTCCGGTTGGCTTGTGGGGTCACTCTTCTTTGGGCGGCCATTGT  100

seq1  GCAGTCTTGCTAAAAATCATTGTCAGCTCTTTTTCATTGAGCCAATCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCTTGCTAAAAATCATTGTCAGCTCTTTTTCATTGAGCCAATCTAA  150

seq1  GAAATTTGATTGACATCTTTTTTTTTTTAAGATTTATTTTATTTATTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTGATTGACATCTTTTTTTTTTTAAGATTTATTTTATTTATTATA  200

seq1  TGTAAGTACACTGTAGCTGTCTTCAGACATCAGAAGAGGGCATCAGGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTACACTGTAGCTGTCTTCAGACATCAGAAGAGGGCATCAGGTCT  250

seq1  TGTTACAGATGGTTGTGAGCCACCATGTGGTTTCTGGGAATTGAACTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACAGATGGTTGTGAGCCACCATGTGGTTTCTGGGAATTGAACTCAG  300

seq1  GACCTCCGGAAGAGCAGTCAGTGCTCTTAACTGCTGAACCATCTCTCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCCGGAAGAGCAGTCAGTGCTCTTAACTGCTGAACCATCTCTCCAG  350

seq1  TCCAATTGACATCTTTTTGTGGTTTGAATTTTAATTTCTTTGAGTATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTGACATCTTTTTGTGGTTTGAATTTTAATTTCTTTGAGTATTAT  400

seq1  TGAAACTTTAGTATTTTGCTTCTTTATGAATTACCTTATTTAATTTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTTTAGTATTTTGCTTCTTTATGAATTACCTTATTTAATTTTTGT  450

seq1  TCCACTTTTCTATTTGGCTATTTGTGTTTCTCTCTTTTTGTATATATGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTTTCTATTTGGCTATTTGTGTTTCTCTCTTTTTGTATATATGTA  500

seq1  TGTGTGTATGCATGCATGTAATTATGTATGTATGTATGCAGGTATGTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATGCATGCATGTAATTATGTATGTATGTATGCAGGTATGTAAT  550

seq1  CTGCAGGATTTGTTTAC-TTATGATAGGATCCCATATAGCTTAGGATG  597
      ||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTGCAGGATTTGTTTACTTTATGATAGGATCCCATATAGCTTAGGATG  598