BAC Information

Click to search

BAC

Clone NameB6Ng01-190A19
Chromosome8 (Build37)
Map Location 54,585,106 - 54,742,137
singlet/doubletdoublet
Overlap geneAga, Neil3
Upstream geneLOC676688
Downstream geneLOC100040107, Vegfc, Spcs3, Asb5, Spata4, Wdr17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190A19.bB6Ng01-190A19.g
ACCGA013905GA013906
length1,089863
definitionB6Ng01-190A19.b B6Ng01-190A19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,585,106 - 54,586,190)(54,741,281 - 54,742,137)
sequence
gaattcaacagagggacttcagggaacaatgtcctagggttcttcttcca
gcagatcaataacatggtgttgttctgtcttgtattctatgaagcatgtg
tctatgcagaaggcataatgcctagttaacattagaaggtataatgccta
gttagcatcaatgctgaatcaattaaccctaagacaattactatccttat
gaaaactcaaatataatatattgggttaggtcctacacacgttatggtat
aaatcatctaattttctaaagttcagattctccttcttgtctgtggacca
tattctattgcctgttctggatgccatgatttctgtctcctttaaggttt
gaatatttctgtccccataaacacattcatggggaattattctttatggt
ctggaacaatctcaaggttgttctaagtgtaagtctgatatatcctttct
aagggagaagctctatttaatcttggtctcatattttactactagcatgc
aatttcaatagcttttttcaagggggtgtctttgtattgtaataacttgg
ttataagcattcaattccatccttctatatatttctatattctatatttg
ggttatatgctgtatggaagtctcattgtatgtccatagtctggaaaact
atggactttagatcctgtaaagtgtattccttactctcactcaataatta
ctagacagccatatctggctatccaacaccagagagtgtatattattgcc
aactggtctggtctatggctttttttaactaagccaagttccgtgcttac
atctactagggtgcaggcataaaggccctggagagcattcaagagtccaa
tgaaatctatatgtagtttttaattaatttgtgtagaagaccatgtttac
atgtgaggttacaatgtaatgtatgaatctagtattaagtgcaaggaaca
tagtgatcagtctctaagggctgattgacaggcctgccaagatacttaaa
gatcatttatcaaatcaatagaacaaaatcatgtatccctcatgtccccc
cggttaatagtaatcataggatgtttttagcttgctaat
gaattcattgcacagggatctggaggctgaaaatggaaggttcaggatca
atcatacattatatttcctaagagttggtttttcagagatgaaatctcct
gtgtggtcctcttacagcaaaggaagcaagctctttggaatcttatttat
aggcataatagtcccagccaggccacaatcacttccaaaggtttcgtctg
ttaaaaacaacatatagatcatgatgcactggcaaccaagtttctgcatg
tgactttgtaggaagagatattccaactagcaaacacaaggactacatgg
aatgattgcagggaaggggcacaggagtttttcctgacttcatgtcctgg
actgtactctctacaagtggttgttagcatttcttctaagccccacccaa
cagttacttagcaacagccaggtattagcctggcttgctataaaaggatc
tctgtctgactgtctgtctgtctgtctgtctgtctgtctctgtctctgtc
tccctctctctctctctccctcttcctccctccgcccttcttctctctca
cctctttctcaccttggcctctttccttctttctctctcctctttctttc
tgtccacttcctttcccacactgctgttcttatgcctgaaatatacttca
tgtttatatcataccctatcatacggctgggacctcaatttgagtggagg
tgtctccgcatatgaccacaaaggcaccctcacctggtgcatcatgcctc
cacattgtctactatatcaatggtatatttattaaaaaaaagaacataat
ctctatttttaatttaagccagtccctcgtgactgggacaaaaacttgat
atccgcataccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_54585106_54586190
seq2: B6Ng01-190A19.b_39_1127

seq1  GAATTCAACAGAGGGACTTCAGGGAACAATGTCCTAGGGTTCTTCTTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAGAGGGACTTCAGGGAACAATGTCCTAGGGTTCTTCTTCCA  50

seq1  GCAGATCAATAACATGGTGTTGTTCTGTCTTGTATTCTATGAAGCATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCAATAACATGGTGTTGTTCTGTCTTGTATTCTATGAAGCATGTG  100

seq1  TCTATGCAGAAGGCATAATGCCTAGTTAACATTAGAAGGTATAATGCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGCAGAAGGCATAATGCCTAGTTAACATTAGAAGGTATAATGCCTA  150

seq1  GTTAGCATCAATGCTGAATCAATTAACCCTAAGACAATTACTATCCTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCATCAATGCTGAATCAATTAACCCTAAGACAATTACTATCCTTAT  200

seq1  GAAAACTCAAATATAATATATTGGGTTAGGTCCTACACACATTATGGTAT  250
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GAAAACTCAAATATAATATATTGGGTTAGGTCCTACACACGTTATGGTAT  250

seq1  AGATCATCTAATTTTCTAAAGTTCAGATTCTCCTTCTTGTCTGTGGACCA  300
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATCTAATTTTCTAAAGTTCAGATTCTCCTTCTTGTCTGTGGACCA  300

seq1  GATTCTATTGCCTGTTCTGGATGCCATGATTTCTGTCTCCTTTAAGGTTT  350
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTATTGCCTGTTCTGGATGCCATGATTTCTGTCTCCTTTAAGGTTT  350

seq1  GAATATTTCTGTCCCCATAAACACATTCATGGGGAATTATTCTTTATGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTTCTGTCCCCATAAACACATTCATGGGGAATTATTCTTTATGGT  400

seq1  CTGGAACAATCTCAAGGTTGTTCTAAGTGTAAGTCTGATATATCCTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACAATCTCAAGGTTGTTCTAAGTGTAAGTCTGATATATCCTTTCT  450

seq1  AAGGGAGAAGCTCTATTTAATCTTGGTCTCATATTTTACTACTAGCATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGAAGCTCTATTTAATCTTGGTCTCATATTTTACTACTAGCATGC  500

seq1  AATTTCAATAGCTTTTTTCAAGGGGGTGTCTTTGTATTGTAATAACTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAATAGCTTTTTTCAAGGGGGTGTCTTTGTATTGTAATAACTTGG  550

seq1  TTATAAGCATTCAATTCCATCCTTCTATATATTTCTATATTCTATATTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGCATTCAATTCCATCCTTCTATATATTTCTATATTCTATATTTG  600

seq1  GGTTATATGCTGTATGGAAGTCTCATTGTATGTCCATAGTCTGGAAAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATATGCTGTATGGAAGTCTCATTGTATGTCCATAGTCTGGAAAACT  650

seq1  ATGGACTTTAGATCCTGTAAAGTGTATTCCTTACTCTCACTCAATAATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTTTAGATCCTGTAAAGTGTATTCCTTACTCTCACTCAATAATTA  700

seq1  CTAGACAGCCATATCTGGCTATCCAACACCAGAGAGTGTATATTATTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACAGCCATATCTGGCTATCCAACACCAGAGAGTGTATATTATTGCC  750

seq1  AACTGGTCTGGTCTATGGCTTTTTTTAGCTAAGCCAAGTTCCGTGCTTAC  800
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AACTGGTCTGGTCTATGGCTTTTTTTAACTAAGCCAAGTTCCGTGCTTAC  800

seq1  ATCTACAAGGGTGCAGGCATAAAGGCCCTGGTGAGCATTCAAGAGTCCAA  850
      |||||| |||||||||||||||||||||||| ||||||||||||||||||
seq2  ATCTACTAGGGTGCAGGCATAAAGGCCCTGGAGAGCATTCAAGAGTCCAA  850

seq1  TGAAATCTATATGTAGTTTTTAATTAAATTGTTTAGAAGACCATG-TTAC  899
      ||||||||||||||||||||||||||| |||| |||||||||||| ||||
seq2  TGAAATCTATATGTAGTTTTTAATTAATTTGTGTAGAAGACCATGTTTAC  900

seq1  AAGTG-GTATTCAATGTAATGTCTGAATCTAGTTTTAAGTGCA--GGACA  946
      | ||| |  | ||||||||||| |||||||||| |||||||||  | |||
seq2  ATGTGAGGTTACAATGTAATGTATGAATCTAGTATTAAGTGCAAGGAACA  950

seq1  AAGGTGGCAGTCTCTAAAGGCCTATTTACAGGCCTGCCAAGATACCTTAA  996
       ||    |||||||||| |||  ||| ||||||||||||||||| |||||
seq2  TAGTGATCAGTCTCTAAGGGCTGATTGACAGGCCTGCCAAGATA-CTTAA  999

seq1  AGTTCTTTTTATCAAATCAGTGGAAC-AAAGCATGTATCTCTATATGTCC  1045
      || ||  |||||||||||| | |||| ||| |||||||| ||  ||||||
seq2  AGATC-ATTTATCAAATCAATAGAACAAAATCATGTATCCCT-CATGTCC  1047

seq1  CCGTGTTTTAT-GTAATCATAGGAT-TTTTTATCTTGCTAAT  1085
      ||  | || || ||||||||||||| |||||| |||||||||
seq2  CCCCGGTTAATAGTAATCATAGGATGTTTTTAGCTTGCTAAT  1089

seq1: chr8_54741281_54742137
seq2: B6Ng01-190A19.g_61_923 (reverse)

seq1  TAGGTATACGGA-ATCATGTTTATGTCCCAGCCACG-GGGAGTGGCTTAA  48
      ||||||| |||| |||| |||| |||||||| |||| |||| ||||||||
seq2  TAGGTATGCGGATATCAAGTTTTTGTCCCAGTCACGAGGGACTGGCTTAA  50

seq1  A-CAAAAATAGCGATTAGGTT-TTTTTTTTAATAAAAATACCATTGATAT  96
      |  |||||||| ||||| ||| |||||||||||||| |||||||||||||
seq2  ATTAAAAATAGAGATTATGTTCTTTTTTTTAATAAATATACCATTGATAT  100

seq1  GTTATGCAATGTGGAGGCATGATGCACCAGGAGAGGGTGCCTTCGTGGGC  146
        ||  ||||||||||||||||||||||||| ||||||||||| |||| |
seq2  AGTAGACAATGTGGAGGCATGATGCACCAGGTGAGGGTGCCTTTGTGGTC  150

seq1  CTATGCGGAGACACCTCCACTCCTGCCGAGGTCCCAGCCGTATGA-AGGG  195
       |||||||||||||||||||||     |||||||||||||||||| ||||
seq2  ATATGCGGAGACACCTCCACTCAAATTGAGGTCCCAGCCGTATGATAGGG  200

seq1  TCTGATATAAA-ATGAAGTATATTTCAGGCATAAGAACAGCAGTGTGGGA  244
      | ||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TATGATATAAACATGAAGTATATTTCAGGCATAAGAACAGCAGTGTGGGA  250

seq1  AAGGAAGGGGACAGAAAGAAAGAGGAGAGAGAAAGAAGGAAAGAGGCCAA  294
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGTGGACAGAAAGAAAGAGGAGAGAGAAAGAAGGAAAGAGGCCAA  300

seq1  GGTGAGAAAGAGGTGAGAGAGAAGAAGGGCGGAGGGAGGAAGAGGGAGAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGAAAGAGGTGAGAGAGAAGAAGGGCGGAGGGAGGAAGAGGGAGAG  350

seq1  AGAGAGAGAGGGAGACAGAGACAGAGACAGACAGACAGACAGACAGACAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGGGAGACAGAGACAGAGACAGACAGACAGACAGACAGACAG  400

seq1  ACAGACAGACAGAGATCCTTTTATAGCAAGCCAGGCTAATACCTGGCTGT  444
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCAGACAGAGATCCTTTTATAGCAAGCCAGGCTAATACCTGGCTGT  450

seq1  TGCTAAGTAACTGTTGGGTGGGGCCTAGAAGAAATGCTAACAACCACTTG  494
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGCTAAGTAACTGTTGGGTGGGGCTTAGAAGAAATGCTAACAACCACTTG  500

seq1  TAGAGAGTACAGTCCAGGACATGAAGTCAGGAAAAACTCCTGTGCCCCTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGTACAGTCCAGGACATGAAGTCAGGAAAAACTCCTGTGCCCCTT  550

seq1  CCCTGCAATCATACCATGTAGTCCTTGTGTTTGCTAGTTGGAATATCTCC  594
      |||||||||||| |||||||||||||||||||||||||||||||||||| 
seq2  CCCTGCAATCATTCCATGTAGTCCTTGTGTTTGCTAGTTGGAATATCTCT  600

seq1  TCCTACAAAGTCACATGCAGAAACTTCGTTGCCAGTGCATCATGATCTAT  644
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCCTACAAAGTCACATGCAGAAACTTGGTTGCCAGTGCATCATGATCTAT  650

seq1  ATGTTGTTTTTAACAGACGAAACCTTTGGAAGTGATTGTGGCCTGGCTGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTTTTTAACAGACGAAACCTTTGGAAGTGATTGTGGCCTGGCTGG  700

seq1  GACTATTATGCCTATAAATAAGATTCCAAAGAGCTTGCTTCCTCTGCTGT  744
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GACTATTATGCCTATAAATAAGATTCCAAAGAGCTTGCTTCCTTTGCTGT  750

seq1  AAGAGGACCACACAGGAGATTTCATCTCTGAAAAACCAACTCTTAGGAAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGACCACACAGGAGATTTCATCTCTGAAAAACCAACTCTTAGGAAA  800

seq1  TATAATGTCTGATTGATCCTGAACCTTCCATTTTCAGCCTCCAGATCCCT  844
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGTATGATTGATCCTGAACCTTCCATTTTCAGCCTCCAGATCCCT  850

seq1  GTGCAATGAATTC  857
      |||||||||||||
seq2  GTGCAATGAATTC  863