BAC Information

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BAC

Clone NameB6Ng01-193O12
Chromosome8 (Build37)
Map Location 19,858,275 - 19,937,418
singlet/doubletdoublet
Overlap geneLOC547150, LOC100040599
Upstream geneAgpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561, LOC624198, EG665730, 4930467E23Rik, LOC100041567
Downstream geneEG665822, 6820431F20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193O12.bB6Ng01-193O12.g
ACCGA016744GA016745
length1,0151,088
definitionB6Ng01-193O12.b B6Ng01-193O12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,858,275 - 19,859,294)(19,936,329 - 19,937,418)
sequence
gaattcaaggtgctgggctgccccgaaggaggctgactggttttatttct
accttttttcagactgcagcaccaacttcacacccaacaattcaagcaag
ttctgatggtaaccagggatctagggcaagatacaggttcagtcccacaa
ggtcagctccagctctgaaccagtggttcatggcagcctgggcgattcac
actgagaacagaccacaatcacagctttccttcatttcctgggactgtgg
ctccttccaacggatgctgtagttcaaaacatggacctttggcgattgag
agataagcagagggtctctccaggcctctccctaaagtaggtcataagac
cattagcaaggcctccccttctgcgtgcagtctgctggtgcaagactata
atcccaacactagggaggtagaggcaaaaggatcaagagctaaggtcaac
ttgggctacatagggatattctatcttaaaataaacaaaaggaagtattc
tccttatatgaagagcaaaggagggccattatttcaggagagactcagaa
aggaatctgaacgcacaggcctggcaagactccctcagttaatgaccctt
ggcttacatctccattgtccaccacagctcctacaactatccacactctg
gcaaatgtcaccctaaaatactgaggtttccctccgccgttggttcttcg
tgtctgtcacaatgtgaaacttacggcaaatgagcattcatctttatctt
cctgtcgctgttataggatctcagcccatataggctgttataggacctaa
aatgggaagaaaaatatttcttttcccccttaatatcaaaatacagcaaa
aatagataatctggacttccttaaaactaaaagcatttgtatttcaagag
atactaccaatacaatttaaaggcttggggtttagttgaaaacatttata
attacatatttaatgaatttcatgacaggctaacacccagacactttaga
agaaagggaggagga
gaattcaaagtctttgattaatttttatatgaatattaaaataacattct
taaaatatgccacagtgaagcaagaccaccaagacagcttaaatctatct
tgaaaaacactgtccagtataatacaggtaagtttaagagtaagtactct
attgattctatcccaatcataaaaagaattttgttcctgctagaatagaa
actaaggaaatcaaatatgccaatagtagttatagcctttcttaatttgc
tgccaaacatttttaggattcaggtttatttaggaattgtttcaaagaaa
tttcaaattcaaattgtatcacctgaaatatgtttgtttatttaaaatga
actactgatgcatgtagtgtctttttagaagtaaaaagatttttcaccta
ttctacaatgtagatcgtctctagttacataacagcaagttgacttcggt
gtgaaatgaatttttacttaagttttataattgatatatattactgactg
catgttgttgtatgtgtatcggtgtccataaaatgtggttatgttaagca
aacaaaaatagagtattcaattactttcactgtattttgaggacttaatg
tcattagggcactctggatttttttccatcatacaatttctgaatttcca
ctcattcgataattcatacattgtcttctggttatttttatttgtcttcc
atttaatgtgaatatcctgatacaataaataactggctcaataggaactt
ttaaaaaactgactggtgtgtgagttttgtaggtagtgctgtggaatgag
aactgccattctcagtattctatgcaacagcctccatatgggctactctg
acagcaccttttcctgtagttctattagttaccaatatatagtgatactt
ggttacatgctacagacataatttgcagaaaaaactgccacagtaggagg
aaggttgagaaaatcctatcatctgtagtgcatagcacggaaggacctat
tgcttcagtctgatatgattcctcacaggtggggagaataccaaacagtt
atgcctttcagcacttgtcacacagcattccctcgcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_19858275_19859294
seq2: B6Ng01-193O12.b_50_1064

seq1  GAATTCAAGGTGCTGGGCTGCCCCGAAAGAGGCTGACTGGTTTTATTTCT  50
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAATTCAAGGTGCTGGGCTGCCCCGAAGGAGGCTGACTGGTTTTATTTCT  50

seq1  ACCTTTTTTCAGACTGCAGCACCAACTTCACACCCAACAATTCAAGCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTTTCAGACTGCAGCACCAACTTCACACCCAACAATTCAAGCAAG  100

seq1  TTCTGATGGTAACCAGGTATCTAGGGCAAGTTACAGGTTCAGTCCCACAA  150
      ||||||||||||||||| |||||||||||| |||||||||||||||||||
seq2  TTCTGATGGTAACCAGGGATCTAGGGCAAGATACAGGTTCAGTCCCACAA  150

seq1  GGTCAGCTCCAGCTCTGAACCAGTGGTTCATGGCAGCCTGGGCGATTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGCTCCAGCTCTGAACCAGTGGTTCATGGCAGCCTGGGCGATTCAC  200

seq1  ACTGAGAACAGACCACAATCACAGCTTTCCTTCATTTCCTGAGACTGTGG  250
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACTGAGAACAGACCACAATCACAGCTTTCCTTCATTTCCTGGGACTGTGG  250

seq1  CTCCTTCCAACGGATGCTGTAGTTCAAAACATGGACCTTTGGCGATTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTCCTTCCAACGGATGCTGTAGTTCAAAACATGGACCTTTGGCGATTGAG  300

seq1  AGATAAGCAGAGGGTCTCTCAAGGCCTCTCCCTGAAGTAGGTCATAAGAT  350
      |||||||||||||||||||| |||||||||||| ||||||||||||||| 
seq2  AGATAAGCAGAGGGTCTCTCCAGGCCTCTCCCTAAAGTAGGTCATAAGAC  350

seq1  CATCAGCAAGGCCTCCCCTCCTGAGTGCAGTCTGCTGGTGCAAGGCTATA  400
      ||| ||||||||||||||| ||| |||||||||||||||||||| |||||
seq2  CATTAGCAAGGCCTCCCCTTCTGCGTGCAGTCTGCTGGTGCAAGACTATA  400

seq1  ATCCCAACACTAGGGAGGTAGAGGCAAAAGGATCAAGAGCTAAGGCCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATCCCAACACTAGGGAGGTAGAGGCAAAAGGATCAAGAGCTAAGGTCAAC  450

seq1  TTGGGCTACATAGGGACATTCTATCTTAAAATAAACAAAAAGAAGTATTC  500
      |||||||||||||||| ||||||||||||||||||||||| |||||||||
seq2  TTGGGCTACATAGGGATATTCTATCTTAAAATAAACAAAAGGAAGTATTC  500

seq1  TCCTTATATGAAGAGCAAAGGAGGGCCATTATTTCAGGAGAGACTCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATATGAAGAGCAAAGGAGGGCCATTATTTCAGGAGAGACTCAGAA  550

seq1  AGGAATCTGAACGCACAGGCCTGGCAAGACTCCCTCAGTTAATGACCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCTGAACGCACAGGCCTGGCAAGACTCCCTCAGTTAATGACCCTT  600

seq1  GGCTTACATCTCCATTGTCCACCACAGCTCCTACAACTATCCACACTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTACATCTCCATTGTCCACCACAGCTCCTACAACTATCCACACTCTG  650

seq1  GCAAATATCACCCTAAAATACTGAGGTTTCCCTCCGCCATTGGTTCTTCG  700
      |||||| ||||||||||||||||||||||||||||||| |||||||||||
seq2  GCAAATGTCACCCTAAAATACTGAGGTTTCCCTCCGCCGTTGGTTCTTCG  700

seq1  TGTCTGTCACAATGTGAAACTTACAGCAAATGAGCATTCATCTTTATCTT  750
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGTCTGTCACAATGTGAAACTTACGGCAAATGAGCATTCATCTTTATCTT  750

seq1  CCTATCGCTGTTATAGGATCTCAGCCTATATAGGCTGTTATAGGACCTAA  800
      ||| |||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCTGTCGCTGTTATAGGATCTCAGCCCATATAGGCTGTTATAGGACCTAA  800

seq1  AATGGGAAGAAAAATACTTCTTTTCCCCTTTAATATCAAAATACAGCAAA  850
      |||||||||||||||| ||||||||||| |||||||||||||||||||||
seq2  AATGGGAAGAAAAATATTTCTTTTCCCCCTTAATATCAAAATACAGCAAA  850

seq1  AATAGATAATTTGGACTTCCTTAAAACTAAAAGCATTTGTATTTCAAGAG  900
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AATAGATAATCTGGACTTCCTTAAAACTAAAAGCATTTGTATTTCAAGAG  900

seq1  ATACTACAAATACAATTAAAAGGCTTGGGGTTTAGTTGAAAACATTTATA  950
      ||||||| ||||||||| ||||||||||||||||||||||||||||||||
seq2  ATACTACCAATACAATTTAAAGGCTTGGGGTTTAGTTGAAAACATTTATA  950

seq1  ATTACATATTTAATGAATTTAATGACAGACTTACACCCAGGACACTTTAG  1000
      |||||||||||||||||||| ||||||| || ||||||| ||||||||||
seq2  ATTACATATTTAATGAATTTCATGACAGGCTAACACCCA-GACACTTTAG  999

seq1  AAGAAGGAGAAGGAGGAGGA  1020
      |||||    | |||||||||
seq2  AAGAA----AGGGAGGAGGA  1015

seq1: chr8_19936329_19937418
seq2: B6Ng01-193O12.g_69_1154 (reverse)

seq1  GTGCGAGAG-ATGCTGTGGTGACAGTTGCTGAAA-GCATAAACTGTGTGG  48
      ||||||| | ||||||| ||||||  |||||||| |||| |||||| |||
seq2  GTGCGAGGGAATGCTGT-GTGACAAGTGCTGAAAGGCAT-AACTGTTTGG  48

seq1  TATT-TCTCCCACTGTGA-GAATCATATTCAGACTGAACCAATGGGCCCT  96
      |||| || ||  |||||| |||||||| |||||||||| |||| || |||
seq2  TATTCTCCCCACCTGTGAGGAATCATA-TCAGACTGAAGCAATAGGTCCT  97

seq1  TCCATGCTATGCACTACAGGATGATAGGATTTTCTCAACCTTCCTCCTAC  146
      ||| |||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCCGTGCTATGCACTACA-GATGATAGGATTTTCTCAACCTTCCTCCTAC  146

seq1  TGTGGCAGTTTTTTCTGCAAATTATGTCTTGTAGCATGTAAACCAAGTAT  196
      |||||||||||||||||||||||||||| |||||||||| ||||||||||
seq2  TGTGGCAGTTTTTTCTGCAAATTATGTC-TGTAGCATGT-AACCAAGTAT  194

seq1  CACTATATATTTGGTAACTAATAGAACTACAGGGAAAATGTGCTGTCAGA  246
      ||||||||| ||||||||||||||||||||| |||||| |||||||||||
seq2  CACTATATA-TTGGTAACTAATAGAACTACA-GGAAAAGGTGCTGTCAGA  242

seq1  GTAGCCCATATGGAGGCTGTTGCATAGAATACTGAGAATGGCAGTTCTCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCCATATGGAGGCTGTTGCATAGAATACTGAGAATGGCAGTTCTCA  292

seq1  TTCCACAGCACTACCAACAAAACTCACACACCAGTCAGTTTTTTAAAAGT  346
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTCCACAGCACTACCTACAAAACTCACACACCAGTCAGTTTTTTAAAAGT  342

seq1  TCCTATTGAGCCAGTTATTTATTGTATCAGGATATTCACATTAAATGGAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTGAGCCAGTTATTTATTGTATCAGGATATTCACATTAAATGGAA  392

seq1  GACAAATAAAAATAACCAGAAGACAATGTATAAATTATCGAATGAGTGGA  446
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GACAAATAAAAATAACCAGAAGACAATGTATGAATTATCGAATGAGTGGA  442

seq1  AATTCAGAAATTCTAGGATGGAAAAAAATCCAGAGTGCCCTTATGACATT  496
      |||||||||||| || ||||||||||||||||||||||||| ||||||||
seq2  AATTCAGAAATTGTATGATGGAAAAAAATCCAGAGTGCCCTAATGACATT  492

seq1  AAGTCCTCAAAATACAGTGAAAGTAATTTAATACTCTATTTTTGTTTGCT  546
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAGTCCTCAAAATACAGTGAAAGTAATTGAATACTCTATTTTTGTTTGCT  542

seq1  TAACATAACCACATTTTATGGACACCGATACACATACAACAACATGCAGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATAACCACATTTTATGGACACCGATACACATACAACAACATGCAGT  592

seq1  CAGTAACATATATCAATTATAAAACTTAAGTAAAAATTCATTTCATACCA  646
      |||||| |||||||||||||||||||||||||||||||||||||| ||| 
seq2  CAGTAATATATATCAATTATAAAACTTAAGTAAAAATTCATTTCACACCG  642

seq1  AAGTCAACTTGCTGTTATGTAACTAGAGAGGATCTACATTGTAGAATAGG  696
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAGTCAACTTGCTGTTATGTAACTAGAGACGATCTACATTGTAGAATAGG  692

seq1  TGAAAAATCTTTTTACTTCTAAAAAGACACTACATGCATCAGTAGTTCAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATCTTTTTACTTCTAAAAAGACACTACATGCATCAGTAGTTCAT  742

seq1  TTTAAATAAACAAACATATTTCAGGTGATACAATTTGAATTTGAAATTTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATAAACAAACATATTTCAGGTGATACAATTTGAATTTGAAATTTC  792

seq1  TTTGAAACAATTCCTAAATAAACCTGAATCCTAAAAATGTTTGGCAGCAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAACAATTCCTAAATAAACCTGAATCCTAAAAATGTTTGGCAGCAA  842

seq1  ATTAAGAAAGGCTATAACTACTATTGGCATATTTGATTTCCTTAGTTTCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGAAAGGCTATAACTACTATTGGCATATTTGATTTCCTTAGTTTCT  892

seq1  ATTCTAGCAGGAACAAAATTCTTTTTATGATTGGGATAGAATCAATAGAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGCAGGAACAAAATTCTTTTTATGATTGGGATAGAATCAATAGAG  942

seq1  TACTTACTCTTAAACTTACCTGTATTATACTGGACAGTGTTTTTCAAGAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACTCTTAAACTTACCTGTATTATACTGGACAGTGTTTTTCAAGAT  992

seq1  AGATTTAAGCTGTCTTGGTGGTCTTGCTTCACTGTGGCATATTTTAAGAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTAAGCTGTCTTGGTGGTCTTGCTTCACTGTGGCATATTTTAAGAA  1042

seq1  TGTTATTTTAATATTCATATAAAAATTAATCAAAGACTTTGAAT  1090
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTTTAATATTCATATAAAAATTAATCAAAGACTTTGAAT  1086