BAC Information

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BAC

Clone NameB6Ng01-194B01
Chromosome8 (Build37)
Map Location 5,366,011 - 5,528,367
singlet/doubletdoublet
Overlap geneLOC623409
Upstream geneLOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359, LOC100039687, LOC436026, Slc10a2, LOC434275
Downstream geneLOC669429, LOC100040360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194B01.bB6Ng01-194B01.g
ACCGA016861GA016862
length1,1681,108
definitionB6Ng01-194B01.b B6Ng01-194B01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,527,207 - 5,528,367)(5,366,011 - 5,367,028)
sequence
gaattctttggtcacaaccttctcagcagcagcccgctccctcttctcaa
tctcctctggatctccggaaaagtaaagatcaggcatgacctcccatggg
tgctcaacaggagatagtacctcacatgtggagtacttccctggccagca
tccaccacatcagacccactgagtgagctcccttgttgttgcatgggatg
gcaatgtccacgtagcgcaggggagaatctgtgctacacagagcaatggt
gggcaggttgacataagaggcctctttgaggggctgatggtcagccctgg
gatcggtcaccactagaagctgtggctccctgaaggctgcttggatctgg
ttagtgaaggttccaggtgtgaagcggccatcaattggagtggctcctgt
ggcagcagcaaacttcagcacagctcactggccagtgttcctagagtaga
tgatgctgacgtcaacagggttctcaatggcaacaatagctcgatctgcg
agcaacagcttctcccaggtcctcttcagatttatgatgtagataccatc
acttttcctttagtagatgtattgctccatatgaaagtcaaagttggcgc
cacctaagtgggttgctacaacaaaaaatttgaggacctcttcttccttc
atctgcacgacatcaagggctccggacattgtgtaagtttccctttaagt
tacgatggaaatcaagaacaaagccataaggacttgttcccagataacgc
agaaaaaaaagcacaatctaactttctagctcttcatttcaatagttatt
tttaatatttatttattgatatttttggaaatttttatatgtgagtacta
caaaggcatcatttttatcccacactttctccctccaatgcatcccatag
cctcccaactctgtctcaactttatgatctctcattcttttaattatttt
tacacataaattgttgcgaaagttgatgcttcaatattcatagcacttcc
cttctttactcttctgatgtcttattttgtacacatccctaaatgtgttc
cctttcttctccacctggataatctactacttttggtccagcattgtaat
tttttccctatatctttggttttttatattcatttgaagctactcatcca
acccctcagcctccttat

gaattcttagtcaccatgaagtggctacatataaaaagaaagagatgcca
ggcagtggtggtgcatgcctttaatcccagcacttcggaggcagagacag
gcagatttctgagttcgagaccagcctggtctacagagtgagttccagga
cagtcagggctacacagagaaaccctgtctcaaaaaggggttggttttag
agtttcagaagcccaaaccaggaccaatgattatctttcttcttgatgcc
cacggatacagatgtagaatacttctccagtactatgtctgcctgcatgc
tgccaagctgataatgaattaaacctctgagactgtaagcaagccccaat
taaatgttttgttttataatagttgtggttttcatgctttctgttcacaa
caaaagcacactaggagagacacagtgtcactaggcctagcttaagcttt
ttaaaccacacagcccactcccagtgatatattttatccaagaaggtcac
acttatcccaacaagactaccatctcctaatctttctaaatagtgccaaa
aattgaaatatatgagcctatgggagctatttttattaaaatcataaatg
tcataggatacatgtacttattctttgatctatccatatttattttcaat
ttcaaatgtaattttacatatgttagaaacatttataaagaaaattatag
aggtctctgaacaaaaatgtgtatctattatttcatgcagactctcacct
gaaacctgaggtcccttgaggctataccttttacttcatggtagataatc
aaaatttatgttggcttttgccttctaaaatttttgatggtagaaaaaaa
tatagaaaatgtagaataattaatggattttgggtgacaaagtatttgat
attatccaatgcatagatatgaagtagcttatttattttaaggcttagaa
aaaagacattagtttgataaaagggattaaatatttagtgagcatgaata
tatattttagatagtagtatatctaagatttctgcttatttttattcagg
ttactgacctcttgcacagaaaaaagccacagcatctttatgtaagaaaa
attcacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_5527207_5528367
seq2: B6Ng01-194B01.b_43_1210 (reverse)

seq1  ATAAGGAGGGCTGA-GGGTTTGATGAGTAGGTTCAAATGAAATAT-AAAA  48
      ||||||| |||||| ||||| ||||||||| |||||||| ||||| ||||
seq2  ATAAGGA-GGCTGAGGGGTTGGATGAGTAGCTTCAAATG-AATATAAAAA  48

seq1  ACCAAAGATATAAGG-AAAAATTACAAATGCTGGA-CAAAAGTAGTAGAT  96
      |||||||||||| || ||||||||| ||||||||| ||||||||||||||
seq2  ACCAAAGATATAGGGAAAAAATTAC-AATGCTGGACCAAAAGTAGTAGAT  97

seq1  TATCCAGGT-GAGAAGAAA-GGAACACATTTA-GGATGTGTTACAAAT-A  142
      ||||||||| ||||||||| |||||||||||| ||||||||   |||| |
seq2  TATCCAGGTGGAGAAGAAAGGGAACACATTTAGGGATGTGTACAAAATAA  147

seq1  GACATCAGAAGAGTAAAG-AGGGAAGTTGCCTATG-ATATTGAAGCATCA  190
      |||||||||||||||||| ||||||||   ||||| ||||||||||||||
seq2  GACATCAGAAGAGTAAAGAAGGGAAGT--GCTATGAATATTGAAGCATCA  195

seq1  ACTTTCGCAACAATTTATGTGTAAAAATAATT-AAAGAATGAGAGATCAT  239
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACTTTCGCAACAATTTATGTGTAAAAATAATTAAAAGAATGAGAGATCAT  245

seq1  AAAGTTGAGACAGAGTTGGGAGGCTATGGGATGCATTGGAGGGAGAAAGT  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGAGACAGAGTTGGGAGGCTATGGGATGCATTGGAGGGAGAAAGT  295

seq1  GTGGGATAAAAATGATGCCTTTGTAGTACTCACATATAAAAATTTCCAAA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGATAAAAATGATGCCTTTGTAGTACTCACATATAAAAATTTCCAAA  345

seq1  AATATCAATAAATAAATATTAAAAATAACTATTGAAATGAAGAGCTAGAA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAATAAATAAATATTAAAAATAACTATTGAAATGAAGAGCTAGAA  395

seq1  AGTTAGATTGTGC-TTTTTTTCTGCGTTATCTGGGAACAAGTCCTTATGG  438
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGTTAGATTGTGCTTTTTTTTCTGCGTTATCTGGGAACAAGTCCTTATGG  445

seq1  CTTTGTTCTTGATTTCCATCGTAACTTAAAGGGAAACTTACACAATGTCC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTCTTGATTTCCATCGTAACTTAAAGGGAAACTTACACAATGTCC  495

seq1  GGAGCCCTTGATGTCGTGCAGATGAAGGAAGAAGAGGTCCTCAAATTTTT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCCTTGATGTCGTGCAGATGAAGGAAGAAGAGGTCCTCAAATTTTT  545

seq1  TGTTGTAGCAACCCACTTAGGTGGCGCCAACTTTGACTTTCATATGGAGC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTAGCAACCCACTTAGGTGGCGCCAACTTTGACTTTCATATGGAGC  595

seq1  AATACATCTACTAAAGGAAAAGTGATGGTATCTACATCATAAATCTGAAG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATCTACTAAAGGAAAAGTGATGGTATCTACATCATAAATCTGAAG  645

seq1  AGGACCTGGGAGAAGCTGTTGCTCGCAGATCGAGCTATTGTTGCCATTGA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTGGGAGAAGCTGTTGCTCGCAGATCGAGCTATTGTTGCCATTGA  695

seq1  GAACCCTGTTGACGTCAGCATCATCTACTCTAGGAACACTGGCCAGTGAG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCTGTTGACGTCAGCATCATCTACTCTAGGAACACTGGCCAGTGAG  745

seq1  CTGTGCTGAAGTTTGCTGCTGCCACAGGAGCCACTCCAATTGATGGCCGC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTGAAGTTTGCTGCTGCCACAGGAGCCACTCCAATTGATGGCCGC  795

seq1  TTCACACCTGGAACCTTCACTAACCAGATCCAAGCAGCCTTCAGGGAGCC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACCTGGAACCTTCACTAACCAGATCCAAGCAGCCTTCAGGGAGCC  845

seq1  ACAGCTTCTAGTGGTGACCGATCCCAGGGCTGACCATCAGCCCCTCAAAG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTCTAGTGGTGACCGATCCCAGGGCTGACCATCAGCCCCTCAAAG  895

seq1  AGGCCTCTTATGTCAACCTGCCCACCATTGCTCTGTGTAGCACAGATTCT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTCTTATGTCAACCTGCCCACCATTGCTCTGTGTAGCACAGATTCT  945

seq1  CCCCTGCGCTACGTGGACATTGCCATCCCATGCAACAACAAGGGAGCTCA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCGCTACGTGGACATTGCCATCCCATGCAACAACAAGGGAGCTCA  995

seq1  CTCAGTGGGTCTGATGTGGTGGATGCTGGCCAGGGAAGTACTCCACATGT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGGGTCTGATGTGGTGGATGCTGGCCAGGGAAGTACTCCACATGT  1045

seq1  GAGGTACTATCTCCTGTTGAGCACCCATGGGAGGTCATGCCTGATCTTTA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTACTATCTCCTGTTGAGCACCCATGGGAGGTCATGCCTGATCTTTA  1095

seq1  CTTTTCCGGAGATCCAGAGGAGATTGAGAAGAGGGAGCGGGCTGCTGCTG  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCGGAGATCCAGAGGAGATTGAGAAGAGGGAGCGGGCTGCTGCTG  1145

seq1  AGAAGGTTGTGACCAAAGAATTC  1161
      |||||||||||||||||||||||
seq2  AGAAGGTTGTGACCAAAGAATTC  1168


seq1: chr8_5366011_5367028
seq2: B6Ng01-194B01.g_159_1170

seq1  ACAGGCAGATTTCTGAGTTCGAGACCAGCCTGGTCTACAGAGTGAGTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAGATTTCTGAGTTCGAGACCAGCCTGGTCTACAGAGTGAGTTCC  50

seq1  AGGACAGTCAGGGCTACACAGAGAAACCCTGTCTCAAAAAGGGGTTGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGTCAGGGCTACACAGAGAAACCCTGTCTCAAAAAGGGGTTGGTT  100

seq1  TTAGAGTTTCAGAAGCCCAAACCAGGACCAATGATTATCTTTCTTCTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGTTTCAGAAGCCCAAACCAGGACCAATGATTATCTTTCTTCTTGA  150

seq1  TGCCCACGGATACAGATGTAGAATACTTCTCCAGTACTATGTCTGCCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACGGATACAGATGTAGAATACTTCTCCAGTACTATGTCTGCCTGC  200

seq1  ATGCTGCCAAGCTGATAATGAATTAAACCTCTGAGACTGTAAGCAAGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCCAAGCTGATAATGAATTAAACCTCTGAGACTGTAAGCAAGCCC  250

seq1  CAATTAAATGTTTTGTTTTATAATAGTTGTGGTTTTCATGCTTTCTGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAAATGTTTTGTTTTATAATAGTTGTGGTTTTCATGCTTTCTGTTC  300

seq1  ACAACAAAAGCACACTAGGAGAGACACAGTGTCACTAGGCCTAGCTTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAAAGCACACTAGGAGAGACACAGTGTCACTAGGCCTAGCTTAAG  350

seq1  CTTTTTAAACCACACAGCCCACTCCCAGTGATATATTTTATCCAAGAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAAACCACACAGCCCACTCCCAGTGATATATTTTATCCAAGAAGG  400

seq1  TCACACTTATCCCAACAAGACTACCATCTCCTAATCTTTCTAAATAGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTTATCCCAACAAGACTACCATCTCCTAATCTTTCTAAATAGTGC  450

seq1  CAAAAATTGAAATATATGAGCCTATGGGAGCTATTTTTATTAAAATCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATTGAAATATATGAGCCTATGGGAGCTATTTTTATTAAAATCATA  500

seq1  AATGTCATAGGATACATGTACTTATTCTTTGATCTATCCATATTTATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCATAGGATACATGTACTTATTCTTTGATCTATCCATATTTATTTT  550

seq1  CAATTTCAAATGTAATTTTACATATGTTAGAAACATTTATAAAGAAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCAAATGTAATTTTACATATGTTAGAAACATTTATAAAGAAAATT  600

seq1  ATAGAGGTCTCTGAACAAAAATGTGTATCTATTATTTCATGCAGACTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGGTCTCTGAACAAAAATGTGTATCTATTATTTCATGCAGACTCTC  650

seq1  ACCTGAAACCTGAGGTCCCTTGAGGCTATACCTTTTACTTCATGGTAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAACCTGAGGTCCCTTGAGGCTATACCTTTTACTTCATGGTAGAT  700

seq1  AATCAAAATTTATGTTGGCTTTTGCCTTCTAAAATTTTTGATGGTAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAATTTATGTTGGCTTTTGCCTTCTAAAATTTTTGATGGTAGAAA  750

seq1  AAAATATAGAAAATGTAGAATAATTAATGGATTTTGGGTGACAAAGTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATAGAAAATGTAGAATAATTAATGGATTTTGGGTGACAAAGTATT  800

seq1  TGATATTATCCAATGCATAGATATGAAGTAGC-TATTTATTTTAAGGCTT  849
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGATATTATCCAATGCATAGATATGAAGTAGCTTATTTATTTTAAGGCTT  850

seq1  AGAAAAAAAGACAATTAGTTTGATAAAAAGGGATTAAATATTTAGTGAAG  899
      || ||||||||| ||||||||||| |||||||||||||||||||||| ||
seq2  AG-AAAAAAGAC-ATTAGTTTGAT-AAAAGGGATTAAATATTTAGTG-AG  896

seq1  CATGAATATATATTTTAGATAGTAGTATATCTAAGGATTTCTGGCTATTT  949
      |||||||||||||||||||||||||||||||||| ||||||||  |||||
seq2  CATGAATATATATTTTAGATAGTAGTATATCTAA-GATTTCTGCTTATTT  945

seq1  TTATTCAGTTTTAACTGGACCTCTTGCACAAGAAAAAAG-CACAGCATCT  998
      |||||||| ||  ||| |||||||||||| ||||||||| ||||||||||
seq2  TTATTCAGGTT--ACT-GACCTCTTGCAC-AGAAAAAAGCCACAGCATCT  991

seq1  TTATGTAAGAAATA-TCACAT  1018
      |||||||||||| | ||||||
seq2  TTATGTAAGAAAAATTCACAT  1012


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