BAC Information

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BAC

Clone NameB6Ng01-194B18
Chromosome8 (Build37)
Map Location 18,871,375 - 18,872,507
singlet/doubletsinglet
Overlap geneAgpat5
Upstream geneLOC665638, LOC100040466, Mcph1, Angpt2
Downstream geneLOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561, LOC624198, EG665730, 4930467E23Rik, LOC100041567, LOC547150
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194B18.bB6Ng01-194B18.g
ACCGA016893GA016894
length1,109959
definitionB6Ng01-194B18.b B6Ng01-194B18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaatcttctctttcaagaatgctgactgctgccaactgcctctc
cccgtggcccctctctgtatagacaggcatagctatggtgaggacttggg
cggctcttgtctttctcctctctctgcttctctaccctttctctcgtgcc
ctccacttaccaggccctgggaagctacacaccaggcaacagtgaccagg
gcctcggcctgggcttcgaccaattactagagcagaaacagcagcagctg
cagtgttgttttgtgctgtgcactgtattaggttgtgttttcatcacctt
tgggttttgtgatgttttgatgaagtcctggtaccattctagtttttaca
ttctgggtagatagagtttattcaaggtctcaaggcatatgaatggaaga
gctcctctttacagccattcgtgtagcatgcataactgctcttctgtatt
ctctctagtgtctttttttttgtgtgtgaatctgatgtcttgttattcac
ctacaatgtggagtaatggtcataaacatataaagtacttatgcctttat
ctgccaaattgtatttaacttttcagcttttaatataactttttatataa
taattaatttattttaaaaaaaattgaataccagcctgttatagtggcat
atgcctgtgttcctagcactcaggagacaaaggcagaagtgtgagaactt
cagactcatactcagctatatacaagaccccaaatttgtgctagattctg
cagtacagccatgagtgtccccatcttagagggagatcgctcatccttgt
gctgttctttaagtcttaccctgcaacccactgtaaagtacactcttgct
cacagtcctttagaatcctcacacttcttttcttcttttacagacaccat
gtcattgcccacttttattattttatctgatggtctacaaagattatgaa
agaagaaaacttggtattgcatcttgtgtaaagttactttgacacaataa
tagtatatcaagaaatgactttcttaaatgaacacctgaaatgcaatagt
ttgtgttctattttttttgatcaccaaatcgacaaaatttatttagatta
aataatctt
gaattcagtctggcggttcctcgggaaattggacatagtactaccggagg
atccagcaatacctctcctgggcatatatccagaagatgccccaactggt
aagaaggacacatgctccactatgttcatagcagccttatttataatagc
cagaagctggaaagaacccagatgcccctcaacagaggaatggatacaga
aaatgtggtacatctacacaatggagtactactcagctattaaaaagaat
gaatttatgaaattcctagccaaatggatggacctggagggcatcatcct
gagtgaggtaacacattcacaaaggaactcacacaatatgtactcactga
taagtggatattagcccaaaacctaggatacccaagatataagatacaat
ttcctaaacacatgaaactcaagaaaaatgaagactgaagtgtggacact
atgcccctccttagaagtgggaacaaaacacccttggaaggagttacaga
gacaaagtttggagctgagatgaaaggatggtccatgtagagacttccat
atccagggatccaccccataatcagcatccaaacgctgacaccattgcat
acactagcaaaattttatcgaaaggacccagatgtagctgtctcttgtga
cattatgccggggcgtagcaaacacagaagtggatgctcacagtcagcta
atggatggatcacagggctcccaatggaggagctagagaaagtagccaag
gagctaaagggatctgcaaccctataggcggaacaacattatgaactaac
cagtaccccggagctcttgactctagctgcatatgtatcaaaagatggcc
tagtcggccatcactggaaagagaggtccattggacacgcaaactttata
tgccccagtacaggggaacgccagggccaaaaagggggagtgggttgggt
aggggaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_18871375_18872507
seq2: B6Ng01-194B18.b_49_1157

seq1  GAATTCAAATCTTCTCTTTCAAGAATGCTGACTGCTGCCAACTGCCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATCTTCTCTTTCAAGAATGCTGACTGCTGCCAACTGCCTCTC  50

seq1  CCCGTGGCCCCTCTCTGTATAGACAGGCATAGCTATGGTGAGGACTTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTGGCCCCTCTCTGTATAGACAGGCATAGCTATGGTGAGGACTTGGG  100

seq1  CGGCTCTTGTCTTTCTCCTCTCTCTGCTTCTCTACCCTTTCTCTCGTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTCTTGTCTTTCTCCTCTCTCTGCTTCTCTACCCTTTCTCTCGTGCC  150

seq1  CTCCACTTACCAGGCCCTGGGAAGCTACACACCAGGCAACAGTGACCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTTACCAGGCCCTGGGAAGCTACACACCAGGCAACAGTGACCAGG  200

seq1  GCCTCGGCCTGGGCTTCGACCAATTACTAGAGCAGAAACAGCAGCAGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGGCCTGGGCTTCGACCAATTACTAGAGCAGAAACAGCAGCAGCTG  250

seq1  CAGTGTTGTTTTGTGCTGTGCACTGTATTAGGTTGTGTTTTCATCACCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTGTTTTGTGCTGTGCACTGTATTAGGTTGTGTTTTCATCACCTT  300

seq1  TGGGTTTTGTGATGTTTTGATGAAGTCCTGGTACCATTCTAGTTTTTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTTGTGATGTTTTGATGAAGTCCTGGTACCATTCTAGTTTTTACA  350

seq1  TTCTGGGTAGATAGAGTTTATTCAAGGTCTCAAGGCATATGAATGGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGTAGATAGAGTTTATTCAAGGTCTCAAGGCATATGAATGGAAGA  400

seq1  GCTCCTCTTTACAGCCATTCGTGTAGCATGCATAACTGCTCTTCTGTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTCTTTACAGCCATTCGTGTAGCATGCATAACTGCTCTTCTGTATT  450

seq1  CTCTCTAGTGTCTTTTTTTTTGTGTGTGAATCTGATGTCTTGTTATTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTAGTGTCTTTTTTTTTGTGTGTGAATCTGATGTCTTGTTATTCAC  500

seq1  CTACAATGTGGAGTAATGGTCATAAACATATAAAGTACTTATGCCTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAATGTGGAGTAATGGTCATAAACATATAAAGTACTTATGCCTTTAT  550

seq1  CTGCCAAATTGTATTTAACTTTTCAGCTTTTAATATAACTTTTTATATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAAATTGTATTTAACTTTTCAGCTTTTAATATAACTTTTTATATAA  600

seq1  TAATTAATTTATTTTAAAAAAAATTGAATACCAGCCTGTTATAGTGGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAATTTATTTTAAAAAAAATTGAATACCAGCCTGTTATAGTGGCAT  650

seq1  ATGCCTGTGTTCCTAGCACTCAGGAGACAAAGGCAGAAGTGTGAGAACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGTGTTCCTAGCACTCAGGAGACAAAGGCAGAAGTGTGAGAACTT  700

seq1  CAGACTCATACTCAGCTATATACAAGACCCCAAATTTGTGCTAGATTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCATACTCAGCTATATACAAGACCCCAAATTTGTGCTAGATTCTG  750

seq1  CAGTACAGCCATGAGTGTCCCCATCTTAGAGGGAGATCGCTCATCCTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACAGCCATGAGTGTCCCCATCTTAGAGGGAGATCGCTCATCCTTGT  800

seq1  GCTGTTCTTTAAGTCTTACCCTGCAACCCACTGT-AAGTACACTCTTGCT  849
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCTGTTCTTTAAGTCTTACCCTGCAACCCACTGTAAAGTACACTCTTGCT  850

seq1  CACAGTCCTTTAGAAT-CTCACACTCTTTCTC----TTTACAGACACCAT  894
      |||||||||||||||| ||||||||  || ||    ||||||||||||||
seq2  CACAGTCCTTTAGAATCCTCACACTTCTTTTCTTCTTTTACAGACACCAT  900

seq1  GTCATTGCCCAC-TTTATTA-TTTATCTGAT-GTCTACAAAGATTATGAA  941
      |||||||||||| ||||||| |||||||||| ||||||||||||||||||
seq2  GTCATTGCCCACTTTTATTATTTTATCTGATGGTCTACAAAGATTATGAA  950

seq1  AGA--GAAACTT-GTA-TGCATTCTGTGTAAAG-TAC-TTGACACAAATA  985
      |||   |||||| ||| |||||  ||||||||| ||| ||||||| ||||
seq2  AGAAGAAAACTTGGTATTGCATCTTGTGTAAAGTTACTTTGACAC-AATA  999

seq1  ATAGTAT-TCAAG-AATGAC-TTCTTAAATGAACA-CTG-AATG-AATAG  1029
      ||||||| ||||| |||||| |||||||||||||| ||| |||| |||||
seq2  ATAGTATATCAAGAAATGACTTTCTTAAATGAACACCTGAAATGCAATAG  1049

seq1  TT--TGTTCTAATTTTTTTGATCAACAAAT---CAAAAAATATTTAGATT  1074
      ||  ||||||| |||||||||||| |||||   |||||  ||||||||||
seq2  TTTGTGTTCTATTTTTTTTGATCACCAAATCGACAAAATTTATTTAGATT  1099

seq1  AAAT-ATC-TAAGATACAAAGCATAATACCACATGAATCATTAAAGTGAG  1122
      |||| ||| |                                        
seq2  AAATAATCTT----------------------------------------  1109

seq1  TAATCAATCTT  1133
                 
seq2  -----------  1109