BAC Information

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BAC

Clone NameB6Ng01-194G11
Chromosome8 (Build37)
Map Location 27,055,828 - 27,056,930
singlet/doubletsinglet
Overlap geneHgsnat
Upstream geneAdam32, Adam9, Tm2d2, Htra4, Plekha2, LOC100042390, Tacc1, LOC670822, LOC100040998, Fgfr1, D030041N04Rik, LOC100042416, Whsc1l1, Ppapdc1, Bag4, Lsm1, Star, Ash2l, Kcnu1
Downstream gene4930444A02Rik, Fnta, Hook3, 1700047A11Rik, Rnf170, Thap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194G11.bB6Ng01-194G11.g
ACCGA017109GA017110
length1,2141,110
definitionB6Ng01-194G11.b B6Ng01-194G11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcccaagttgtcctatgatctccacacacatgccccaccaccac
caccaccactacacacaaaacaaatgtttaaagaaaccagacaaaaaccc
taaaatactgtctcctgggattaaaggagcatgccaccatggctgggcct
atgcttttcatggccactgtgcctcaagatctggatcccaggtgtgcctt
ccatttctggagtataattcattccaggttaaaagctcaaatgaaaacaa
caatcaagtactaataatgcctaacatgatttaactatttcttgttcaac
tgcagatgactaaacaatcagcctagctgggtgggatcttgccacaaagt
caccactcccttaatctacttatttcctcgaacacactagtctgctccat
tgcactttctggtgcccttttctaaccttgaacggtacattttgtatttt
tcctttctaaccttgctgtgcttgatcaaaatgttcttcatgagagtaat
ctagaagacagatggacttttcttaaaacatcctttgtcaatgcaactaa
tagaaatctttttaccttagcctctggtagatttttcaaacaagggcaaa
gagcagccacattcttcatcaaagtaaaagaatttaaatcgccctcagca
ccattgtcttctatattcctacaagaatggctcattacgtcccatttaaa
gcatcctatggctttctaaatctaaagtcccaaaattcactttcctccaa
acaaaaacatgaccaggtaggttatcacaccaacactcagtgtcccaatg
tccatattcctccaaacaaaagcacagtcaggcctagcacatcaatatcc
cactcatggtagcaccttctgtcttagggtttccattgctgagaaagcac
accatgaacaaggaactcttctgtgggacatttaactggggctggcttac
agtttagaggtccagtccatttatcatcatggcacgaagcatggcagcat
ccaggcagatgtgatgttgatgagctaagagtctcatctgatggagcagc
agaggactggcatcagaggcagcctagaggaaatttcaagccacccaagt
gacccgttccttctaccaagttccacaacctagtgtccactccctgggcc
aagcatatcgaccacactaaccatgtgatcaggtaaatttgaccgtgata
tatgagatggacga
gaattcttgaaatgaatccaataaatagcatgaaacatgcacttgcatta
ttccccactgccccacatgcatgaggcgtagcttggctgtgaagtacagt
tgtaaattcgtaggaagtaggagcgtcagcctgctcaggaggtaaagacg
tttgccaccaagcctgaggacctcaattctaccccaaggaccctcttggt
ggagagaactgacttctgtaagttgtactccagcatgtgcacacatgtgc
acatatcacacacacacacaccatgcgcacacattcatacacacacactg
acacatatacatacatactcacatatatacatgcacacacatatacatac
atgcacacacattcatacacacatatacatacatgcacacactcatgcat
atgtacacacatgcatatacacacacaggcacattcatatatacattcac
aaacatgcacacgcacacacacacactcacacatggacatgcacacatat
cacatatatacatatacacatgcaagcacatacacacacacacacacaca
cacacacacacacacacacacgagacacaatcatatttcttactaaaagc
aatcttgtcctgggtcacatccagcacttcaccattttatactgcccgaa
tataagcagagtgtatttactgactctaggggactaaacgtgtgacaatg
gggtatagggctttgggacaggccaggaacctcctgtgagctgggcgtcc
cagcccctgctggtttcttcctcagcttgcttcctggaaatgtgtctcta
gacagagctccagctctaaggaagcccaggccctctgaagccagtccccc
cgcgaccacctactgctgacagctaactcacctgggattagaagaagggg
ggttcccgtccacaggcctcttcacatccacaactggggtagagaaatga
gaggatgaagaaagccaaagcagctcagtggtggtgacgtacgagatgga
cctaccgggagagagcgagggagagcctgtcacacttcctgggaacaccc
agtttcacatgagggtcacaggtaccacggtaccctctaccatactacca
gagattcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_27055828_27056930
seq2: B6Ng01-194G11.g_65_1174

seq1  GAATTCTTGAAATGAATCCAATAAATAGCATGAAACATGCACTTGCATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAAATGAATCCAATAAATAGCATGAAACATGCACTTGCATTA  50

seq1  TTCCCCACTGCCCCACATGCATGAGGCGTAGCTTGGCTGTGAAGTACAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCACTGCCCCACATGCATGAGGCGTAGCTTGGCTGTGAAGTACAGT  100

seq1  TGTAAATTCGTAGGAAGTAGGAGCGTCAGCCTGCTCAGGAGGTAAAGACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATTCGTAGGAAGTAGGAGCGTCAGCCTGCTCAGGAGGTAAAGACG  150

seq1  TTTGCCACCAAGCCTGAGGACCTCAATTCTACCCCAAGGACCCTCTTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCACCAAGCCTGAGGACCTCAATTCTACCCCAAGGACCCTCTTGGT  200

seq1  GGAGAGAACTGACTTCTGTAAGTTGTACTCCAGCATGTGCACACATGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAACTGACTTCTGTAAGTTGTACTCCAGCATGTGCACACATGTGC  250

seq1  ACATATCACACACACACACACCATGCGCACACATTCATACACACACACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCACACACACACACACCATGCGCACACATTCATACACACACACTG  300

seq1  ACACATATACATACATACTCACATATATACATGCACACACATATACATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATATACATACATACTCACATATATACATGCACACACATATACATAC  350

seq1  ATGCACACACATTCATACACACATATACATACATGCACACACTCATGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACACACATTCATACACACATATACATACATGCACACACTCATGCAT  400

seq1  ATGTACACACATGCATATACACACACAGGCACATTCATATATACATTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACACACATGCATATACACACACAGGCACATTCATATATACATTCAC  450

seq1  AAACATGCACACGCACACACACACACTCACACATGGACATGCACACATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGCACACGCACACACACACACTCACACATGGACATGCACACATAT  500

seq1  CACATATATACATATACACATGCAAGCACATACACACACACACACACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATATACATATACACATGCAAGCACATACACACACACACACACACA  550

seq1  CACACACACACACACACACACGAGACACAATCATATTTCTTACTAAAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACGAGACACAATCATATTTCTTACTAAAAGC  600

seq1  AATCTTGTCCTGGGTCACATCCAGCACTTCACCATTTTATACTGCCCGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGTCCTGGGTCACATCCAGCACTTCACCATTTTATACTGCCCGAA  650

seq1  TATAAGCAGAGTGTATTTACTGACTCTAGGGGACTAAACGTGTGACAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGCAGAGTGTATTTACTGACTCTAGGGGACTAAACGTGTGACAATG  700

seq1  GGGTATAGGGCTTTGGGACAGGCCAGGAACCTCCTGTGAGCTGGGCGTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATAGGGCTTTGGGACAGGCCAGGAACCTCCTGTGAGCTGGGCGTCC  750

seq1  CAGCCCCTGCTGGTTTCTTCCTCAGCTTGCTTCCTGGAAATGTGTCTCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCTGCTGGTTTCTTCCTCAGCTTGCTTCCTGGAAATGTGTCTCTA  800

seq1  GACAGAGCTCCAGCTCTAAGGAAGCCCAGG-CCTCTGAAGCCAGTCCCCC  849
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GACAGAGCTCCAGCTCTAAGGAAGCCCAGGCCCTCTGAAGCCAGTCCCCC  850

seq1  CGCGACCACCTACTGCTGACAGCTAACTCACCTGG--ATAGAAGAA-GGG  896
      |||||||||||||||||||||||||||||||||||   |||||||| |||
seq2  CGCGACCACCTACTGCTGACAGCTAACTCACCTGGGATTAGAAGAAGGGG  900

seq1  GGTTCCCGTCCACAGGCC-CTTCACATCCACAACT-GGGTAGAG-AATGA  943
      |||||||||||||||||| |||||||||||||||| |||||||| |||||
seq2  GGTTCCCGTCCACAGGCCTCTTCACATCCACAACTGGGGTAGAGAAATGA  950

seq1  GGAGGATGAAG-AAGGCAAAGCAGCTCAGT-GTGGTGACGTACGAGATGG  991
       |||||||||| ||| |||||||||||||| |||||||||||||||||||
seq2  -GAGGATGAAGAAAGCCAAAGCAGCTCAGTGGTGGTGACGTACGAGATGG  999

seq1  ACCTACGGGAAGAAGAGCGAGGGAGAG-CTGTCACAC-TCCTGGGAACAC  1039
      |||||| || || |||||||||||||| ||||||||| ||||||||||||
seq2  ACCTACCGGGAG-AGAGCGAGGGAGAGCCTGTCACACTTCCTGGGAACAC  1048

seq1  CCAGTTTCAACATGAGGGCCAACAGG-AACACGGCACCCTCTACCATACT  1088
      |||||||| ||||||||| | ||||| | ||||| |||||||||||||| 
seq2  CCAGTTTC-ACATGAGGGTC-ACAGGTACCACGGTACCCTCTACCATAC-  1095

seq1  TACCAGAGATTCTTG  1103
      |||||||||||||||
seq2  TACCAGAGATTCTTG  1110