BAC Information

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BAC

Clone NameB6Ng01-195H16
Chromosome8 (Build37)
Map Location 108,850,983 - 108,961,549
singlet/doubletdoublet
Overlap geneSmpd3, Zfp90
Upstream geneHspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7
Downstream gene6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1, Nob1, Wwp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195H16.bB6Ng01-195H16.g
ACCGA017886GA017887
length1,1931,138
definitionB6Ng01-195H16.b B6Ng01-195H16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,960,376 - 108,961,549)(108,850,983 - 108,852,102)
sequence
gaattcaaggttagcctccattacatatagattttgagaacatcctgggc
tacataagctctatctacagaaaaatcaaccaaccaataataagataagt
tttggtgaccttgaaattatcttggctgttcttgaactctcattcagaca
agaggaaagaactcccaccccaacccccacttccatttccccatttccca
ccttcacccctgcccagcagaaagtcaccgattgctgtagaccattcctt
ttatttgcatgaagggctatgctgtgattggcacaaatacagtccttcat
ttgcatgaagggctatgctgtgattggcacaaatacagtccttcatttgc
atgaagggctgcaccataactggtacagacattcttgcccccccccccca
cctactacttggttatagaaccaaagttttcagcttacttttttttttta
aagattaatttatatgtaaatacactgtagctgtcttcagacactccaga
agagggagtcagatctcattatggatggttgtgagccaccatgtggttgc
tgggatttgaactccagaccttcggaagagcagttgggtgctcttaccca
ctgagccatctcaccagccccttcagcttacttttaaggtgagctgggag
acaccctttttcgctattttccggagatataacattaagagtcaacaaat
ggtatctcctgaatggccttttctttcttttcccttccctcctttctttc
ctttcttacctccttcctttttgagatagtttctctctatgtagccctgg
ctagtctggaaattatgtagaccagattggcattgaactcacagaggttc
cctcaccttctgtctcctgagtgccgagactaaacttctttgcttacttt
tgatttctatcacaggtacagtgggctgaagctggtagcgtgaagaagac
aaagcaaagcagccgtggcagcaacaagcaattggccaagagggcatccc
agagttccagagaagagatgcagagacaggcagatgatacaggaccttgg
aaatagaggttatccaaggccaaagaattgagggatgccaggtccttgac
cggcttgaagagtttccttggcagctggcttaaggcttgagagttgaaat
gtcctaccccatagcagctatgcaggatgtgaaaggggatatg
gaattctttggcaattgaagaacgctggaaggaatgttggatgtatctgc
ttataccttgcacaagttctggccttggattcctgcactcaaaactgcca
cagaatgattacatccagtgggatgctccaagccagtggttatgttcctt
tgcctagtgatatgtttggttcttccctagctacttttcttgttgctgtg
acaaagtacccaacaagaaacaacttaagaaaggggtctgcaagatggtt
cactgagtaaagactcctgaaaatgtaattgtagtctgcaggcaccacaa
agcagaggaagatcaactctcaaaagctgtcctttgatttccatttgcca
gctatagcttggaaggacagacggatggacggacatgcacacacacacac
acacacacacacacacacacacacacacaccccacattttaaaatgtact
taaaagtaggttttatatattaaaacaattagggaagggcctattttggc
ttgaagctgaatgtacagcctatcatgtaggaagccatggctgcaggagc
ttacagtagttgggcacatgcatctattaggagttaagaagcagagagaa
aggaatataatgttcagctcgttttccctttctatcaagttcaggatcct
ggcccacggatggtgtgtcctgtagttaagagggtatttccccttctttt
aaactaatctagttaaacagtccctcacaggtatatccaaggcttgcctc
ctaggaatttctagtttctgtcatgttcacaatattaatcacaatggttc
tctaacactcatcatacagatgttccaagtttctcaaacatttattttcc
tatagaatctcctctccagtgaccctggagcccatgggttggcatttcct
attattgtctatttgatcacaagctttttctgtccccaaacccagccttt
tcctatgacactaatccatgataaccaaacaaaaagaccttctctaacaa
actaaaccacaaagaattttctcccctcccttcaaacagttttggttcct
tcttgaacattgactaagagagccgtgaatcacttgatttagaagcacgt
tttggggcctgaaaagaatagctcagcgttagagcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_108960376_108961549
seq2: B6Ng01-195H16.b_30_1222 (reverse)

seq1  CATATCCC--TTTACATCTTGCAT-GCTGCTATGGGTGTAAGGAC-CATC  46
      ||||||||  || ||||| ||||| ||||||||||| || |||||   ||
seq2  CATATCCCCTTTCACATCCTGCATAGCTGCTATGGG-GT-AGGACATTTC  48

seq1  AACTCTCAAGGCTTA--GCAGCTTCCA--GGAACTCTTCCAG-CGGTC-A  90
      |||||||||| ||||   ||||| |||  | |||||||| || ||||| |
seq2  AACTCTCAAGCCTTAAGCCAGCTGCCAAGGAAACTCTTCAAGCCGGTCAA  98

seq1  GGGCCT-GCATCCCTCA--TCTTTGGCCTTGGATAACCTCTATTTCCAGG  137
      || ||| ||||||||||  ||||||||||||||||||||||||||||| |
seq2  GGACCTGGCATCCCTCAATTCTTTGGCCTTGGATAACCTCTATTTCCAAG  148

seq1  GTCCTGTATCATCTTGCCTGTCTCTGCATCTC-TCTCTGGAACTCT-GGA  185
      ||||||||||||| |||||||||||||||||| ||||||||||||| |||
seq2  GTCCTGTATCATC-TGCCTGTCTCTGCATCTCTTCTCTGGAACTCTGGGA  197

seq1  TGCCCTCTTG--CCATTGC-TGTTGCTGCCACGGCTGCTTTGC-TTGTCT  231
      ||||||||||  | ||||| ||||||||||||||||||||||| ||||||
seq2  TGCCCTCTTGGCCAATTGCTTGTTGCTGCCACGGCTGCTTTGCTTTGTCT  247

seq1  TC-TCACGCTACCAGC-TCAGCCCACTGTACCTGTGATAGAAATCAAAAG  279
      || ||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCTTCACGCTACCAGCTTCAGCCCACTGTACCTGTGATAGAAATCAAAAG  297

seq1  TAAGCAAAGAAGTTTAGTCTCGGCACTCAGGAGACAG-AGGTGAGGGAAC  328
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TAAGCAAAGAAGTTTAGTCTCGGCACTCAGGAGACAGAAGGTGAGGGAAC  347

seq1  CTCTGTGAGTTCAATGCCAATCTGGTCTACATAATTTCCAGACTAGCCAG  378
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGAGTTCAATGCCAATCTGGTCTACATAATTTCCAGACTAGCCAG  397

seq1  GGCTACATAGAGAGAAACTATCTCAAAAAGGAAGGAGGTAAGAAAGGAAA  428
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACATAGAGAGAAACTATCTCAAAAAGGAAGGAGGTAAGAAAGGAAA  447

seq1  GAAAGGAGGGAAGGGAAAAGAAAGAAAAGGCCATTCAGGAGATACCATTT  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAGGGAAGGGAAAAGAAAGAAAAGGCCATTCAGGAGATACCATTT  497

seq1  GTTGACTCTTAATGTTATATCTCCGGAAAATAGCGAAAAAGGGTGTCTCC  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACTCTTAATGTTATATCTCCGGAAAATAGCGAAAAAGGGTGTCTCC  547

seq1  CAGCTCACCTTAAAAGTAAGCTGAAGGGGCTGGTGAGATGGCTCAGTGGG  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCACCTTAAAAGTAAGCTGAAGGGGCTGGTGAGATGGCTCAGTGGG  597

seq1  TAAGAGCACCCAACTGCTCTTCCGAAGGTCTGGAGTTCAAATCCCAGCAA  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCACCCAACTGCTCTTCCGAAGGTCTGGAGTTCAAATCCCAGCAA  647

seq1  CCACATGGTGGCTCACAACCATCCATAATGAGATCTGACTCCCTCTTCTG  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGGTGGCTCACAACCATCCATAATGAGATCTGACTCCCTCTTCTG  697

seq1  GAGTGTCTGAAGACAGCTACAGTGTATTTACATATAAATTAATCTTTAAA  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTCTGAAGACAGCTACAGTGTATTTACATATAAATTAATCTTTAAA  747

seq1  AAAAAAAAGTAAGCTGAAAACTTTGGTTCTATAACCAAGTAGTAGGTGGG  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGTAAGCTGAAAACTTTGGTTCTATAACCAAGTAGTAGGTGGG  797

seq1  GGGGGGGGGCAAGAATGTCTGTACCAGTTATGGTGCAGCCCTTCATGCAA  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGGCAAGAATGTCTGTACCAGTTATGGTGCAGCCCTTCATGCAA  847

seq1  ATGAAGGACTGTATTTGTGCCAATCACAGCATAGCCCTTCATGCAAATGA  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGACTGTATTTGTGCCAATCACAGCATAGCCCTTCATGCAAATGA  897

seq1  AGGACTGTATTTGTGCCAATCACAGCATAGCCCTTCATGCAAATAAAAGG  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGTATTTGTGCCAATCACAGCATAGCCCTTCATGCAAATAAAAGG  947

seq1  AATGGTCTACAGCAATCGGTGACTTTCTGCTGGGCAGGGGTGAAGGTGGG  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTCTACAGCAATCGGTGACTTTCTGCTGGGCAGGGGTGAAGGTGGG  997

seq1  AAATGGGGAAATGGAAGTGGGGGTTGGGGTGGGAGTTCTTTCCTCTTGTC  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGGAAATGGAAGTGGGGGTTGGGGTGGGAGTTCTTTCCTCTTGTC  1047

seq1  TGAATGAGAGTTCAAGAACAGCCAAGATAATTTCAAGGTCACCAAAACTT  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAGAGTTCAAGAACAGCCAAGATAATTTCAAGGTCACCAAAACTT  1097

seq1  ATCTTATTATTGGTTGGTTGATTTTTCTGTAGATAGAGCTTATGTAGCCC  1128
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATTATTGGTTGGTTGATTTTTCTGTAGATAGAGCTTATGTAGCCC  1147

seq1  AGGATGTTCTCAAAATCTATATGTAATGGAGGCTAACCTTGAATTC  1174
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGTTCTCAAAATCTATATGTAATGGAGGCTAACCTTGAATTC  1193

seq1: chr8_108850983_108852102
seq2: B6Ng01-195H16.g_65_1202

seq1  GAATTCTTTGGCAATTGAAGAACGCTGGAAGGAATGTTGGATGTATCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGCAATTGAAGAACGCTGGAAGGAATGTTGGATGTATCTGC  50

seq1  TTATACCTTGCACAAGTTCTGGCCTTGGATTCCTGCACTCAAAACTGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACCTTGCACAAGTTCTGGCCTTGGATTCCTGCACTCAAAACTGCCA  100

seq1  CAGAATGATTACATCCAGTGGGATGCTCCAAGCCAGTGGTTATGTTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGATTACATCCAGTGGGATGCTCCAAGCCAGTGGTTATGTTCCTT  150

seq1  TGCCTAGTGATATGTTTGGTTCTTCCCTAGCTACTTTTCTTGTTGCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGTGATATGTTTGGTTCTTCCCTAGCTACTTTTCTTGTTGCTGTG  200

seq1  ACAAAGTACCCAACAAGAAACAACTTAAGAAAGGGGTCTGCAAGATGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTACCCAACAAGAAACAACTTAAGAAAGGGGTCTGCAAGATGGTT  250

seq1  CACTGAGTAAAGACTCCTGAAAATGTAATTGTAGTCTGCAGGCACCACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGTAAAGACTCCTGAAAATGTAATTGTAGTCTGCAGGCACCACAA  300

seq1  AGCAGAGGAAGATCAACTCTCAAAAGCTGTCCTTTGATTTCCATTTGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGGAAGATCAACTCTCAAAAGCTGTCCTTTGATTTCCATTTGCCA  350

seq1  GCTATAGCTTGGAAGGACAGACGGATGGACGGACATGCACACACACACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAGCTTGGAAGGACAGACGGATGGACGGACATGCACACACACACAC  400

seq1  ACACACACACACACACACACACACACACACCCCACATTTTAAAATGTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACCCCACATTTTAAAATGTACT  450

seq1  TAAAAGTAGGTTTTATATATTAAAACAATTAGGGAAGGGCCTATTTTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTAGGTTTTATATATTAAAACAATTAGGGAAGGGCCTATTTTGGC  500

seq1  TTGAAGCTGAATGTACAGCCTATCATGTAGGAAGCCATGGCTGCAGGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCTGAATGTACAGCCTATCATGTAGGAAGCCATGGCTGCAGGAGC  550

seq1  TTACAGTAGTTGGGCACATGCATCTATTAGGAGTTAAGAAGCAGAGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTAGTTGGGCACATGCATCTATTAGGAGTTAAGAAGCAGAGAGAA  600

seq1  AGGAATATAATGTTCAGCTCGTTTTCCCTTTCTATCAAGTTCAGGATCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATATAATGTTCAGCTCGTTTTCCCTTTCTATCAAGTTCAGGATCCT  650

seq1  GGCCCACGGATGGTGTGTCCTGTAGTTAAGAGGGTATTTCCCCTTCTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCACGGATGGTGTGTCCTGTAGTTAAGAGGGTATTTCCCCTTCTTTT  700

seq1  AAACTAATCTAGTTAAACAGTCCCTCACAGGTATATCCAAGGCTTGCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAATCTAGTTAAACAGTCCCTCACAGGTATATCCAAGGCTTGCCTC  750

seq1  CTAGGAATTTCTAGTTTCTGTCATGTTCACAATATTAATCACAATGGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAATTTCTAGTTTCTGTCATGTTCACAATATTAATCACAATGGTTC  800

seq1  TCTAACACTCATCATACAGATGTTCCAAGTTTCTCAAACATTTA-TTTCC  849
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCTAACACTCATCATACAGATGTTCCAAGTTTCTCAAACATTTATTTTCC  850

seq1  TATAGAATCTCCTCTCCAGTGACCCTGGAGCCCAT-GGTTGGCA-TTCCT  897
      ||||||||||||||||||||||||||||||||||| |||||||| |||||
seq2  TATAGAATCTCCTCTCCAGTGACCCTGGAGCCCATGGGTTGGCATTTCCT  900

seq1  ATTATTGTCTATTTGATCAC-AGC-TTTTCTGTCCCC-AACCCAGCC-TT  943
      |||||||||||||||||||| ||| |||||||||||| ||||||||| ||
seq2  ATTATTGTCTATTTGATCACAAGCTTTTTCTGTCCCCAAACCCAGCCTTT  950

seq1  TCCTATGACACTAATCCATGATAACCAAAC-AAAAGACC-TCTCT-ACAA  990
      |||||||||||||||||||||||||||||| |||||||| ||||| ||||
seq2  TCCTATGACACTAATCCATGATAACCAAACAAAAAGACCTTCTCTAACAA  1000

seq1  ACT-AACCACAAAGAA-TTTCT-CCCTCCC-TCAAACAGTTTTTGGTTCC  1036
      ||| |||||||||||| ||||| ||||||| |||||||| ||||||||||
seq2  ACTAAACCACAAAGAATTTTCTCCCCTCCCTTCAAACAG-TTTTGGTTCC  1049

seq1  -TCT--GACATTGAACTAGAGAGGCCGTG-ATCACTGG--TTAAGAGCAC  1080
       |||   |||||||   ||||| |||||| |||||| |  |||  |||||
seq2  TTCTTGAACATTGACTAAGAGA-GCCGTGAATCACTTGATTTAGAAGCAC  1098

seq1  GTTTTGGGG-CTGGAGAG-ATAGCTCAGCGGTTAGGAGCACT  1120
      ||||||||| ||| | || |||||||||| |||| |||||||
seq2  GTTTTGGGGCCTGAAAAGAATAGCTCAGC-GTTA-GAGCACT  1138