BAC Information

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BAC

Clone NameB6Ng01-195I23
Chromosome8 (Build37)
Map Location 45,766,936 - 45,897,332
singlet/doubletdoublet
Overlap geneLOC100039508
Upstream geneLOC100039472, LOC547011, LOC622263
Downstream geneFat1, LOC100039673, Mtnr1a, EG622523, F11, Klkb1, Cyp4v3, BC035537, Tlr3, Sorbs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195I23.bB6Ng01-195I23.g
ACCGA017946GA017947
length1,1421,158
definitionB6Ng01-195I23.b B6Ng01-195I23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,766,936 - 45,768,072)(45,896,173 - 45,897,332)
sequence
gaattcaaacatttgctttgcagctccaaggcacaggcaataagacaagg
aatagagatgtgccagtttgaagtgaaccattatatacttgctaccatgg
tacgtgacaaaatcatttttttattttgagcaggtgaagccagtgatccc
caaatgtgaatacagatgttttgattattgttattgttggtattggggcc
acaaacaagctaagacaaccctggttctcactttgaggcagagagtcaac
atccttctctggctaatggtttactttaattctctcagctctctttgcta
cacaacgaaacacattaaaaagctagaggcttcaaagggtcaacattatc
tctgtgttttggaaagcctgaagtggcagaagttggaggtgtttgcttaa
aggggccatgggggttcagtcttatccaaagggtccaccagggaggatgt
ggtcataaaatcgcttccacaactgttgtcaggattcagactctcacagg
ctggtggcttcactgcctgggcatgtagccctctccacagtacagcccat
agcaggccagctgggttcccttgggaagaagaaaggaaaagaagggacag
aaacaaaagtaataggaggggggagcagaagagagatggaccttacacac
acacacacacacacacacacacacgcacgcacacacacacacacacacac
acacacacacacacgcacctacgcacgcacagcctcatcccatgactcag
agatatatcctatcacttttgcaaaattctgcacaagagaaaacaggtag
aagattgaacctgccctcagtaggagagaattcattttagtgtgcatagc
aggaaagagcacctatagggaactagtggttactttgcaaaagtgtcgat
acatgtgaccacagtttcagtgttattatagaagttatactatgggggct
actctgagtagtcaatttgctaactagtataactgatgtatactaagaac
aattttggaattagactcaactggcctacaagaaggatatttttttatta
attcctaaacttagccacattttatttaaataattctttggcaaagtcta
ctaactagatttgtctggttctgctttcagtctaaaactgta
cgcggaattctctctctctctctttttttcttttcttttttctactccaa
ggccagatcatgtaggacttactcaagccccagctgtcctgtctatggat
ggaggttgccttagatcacaggaatgagcacccggaagcacattgcaccc
agaaaccgcttggacctgtggttcttaaactttttaatactgtgaccttt
caatacagttcctcatgttgtgatgaccccaaccataactttatttttgt
tggtagttcataactataattttgttactgttatgaatcatagggtaaat
acctgcgctttctgttggtcttaggcaacccccgtgagagggtcgttctt
cttctaaagaagttgtgacacacaacttcccagaactaccgacttagact
ctgacacaaattcgtgcctcttctttggttcaatacacctctcctaagca
tcagttacttcttctcagaattgttcgtattagctcggttctttgtctcc
taggaagggcacgcagcttctgtctctctttgaattattaggtactcata
cttccatgatacttcacgcccccttcatgtgtgtcattaatttgcctcct
ctgtttatatgtattttccaggtctactttagcagaatccattatagaac
cttcaaggagcatacaggccattcacccccttagcccttacatgtagctg
tgggaagagctgatagcccaaacttgctttatatcacagcttagctgtgt
attaagtctaagatcttggggaaatcattcaggttgaaaaataatttctt
ctctgtgagcacaagttgaataagaagagttatctcatgaaactataaga
ataaacaaaacaaaacaaaacaaaaaaaccgcaagagatgccttcggtag
tgtgggtgagacatggccagtacttatgcagaccatttaaatattattat
ttcacttatgcatgtcagaatgagctctagacagttcccacagaatttct
aacataatggtcgcaaatattacttactaacaatgtaaatacagacattg
aatgtattgcaatagagattaaattaaatattttagaacctgtattttac
aagaataaacacctcatagcgttatcataatgtttgtggcactatgtttc
tttaattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_45766936_45768072
seq2: B6Ng01-195I23.b_45_1186

seq1  GAATTCAAACATTTGCTTTGCAGCTCCAAGGCACAGGCAATAAGACAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACATTTGCTTTGCAGCTCCAAGGCACAGGCAATAAGACAAGG  50

seq1  AATAGAGATGTGCCAGTTTGAAGTGAACCATTATATACTTGCTACCATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGATGTGCCAGTTTGAAGTGAACCATTATATACTTGCTACCATGG  100

seq1  TACGTGACAAAATCATTTTTTTATTTTGAGCAGGTGAAGCCAGTGATCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTGACAAAATCATTTTTTTATTTTGAGCAGGTGAAGCCAGTGATCCC  150

seq1  CAAATGTGAATACAGATGTTTTGATTATTGTTATTGTTGGTATTGGGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTGAATACAGATGTTTTGATTATTGTTATTGTTGGTATTGGGGCC  200

seq1  ACAAACAAGCTAAGACAACCCTGGTTCTCACTTTGAGGCAGAGAGTCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAGCTAAGACAACCCTGGTTCTCACTTTGAGGCAGAGAGTCAAC  250

seq1  ATCCTTCTCTGGCTAATGGTTTACTTTAATTCTCTCAGCTCTCTTTGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCTCTGGCTAATGGTTTACTTTAATTCTCTCAGCTCTCTTTGCTA  300

seq1  CACAACGAAACACATTAAAAAGCTAGAGGCTTCAAAGGGTCAACATTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACGAAACACATTAAAAAGCTAGAGGCTTCAAAGGGTCAACATTATC  350

seq1  TCTGTGTTTTGGAAAGCCTGAAGTGGCAGAAGTTGGAGGTGTTTGCTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTTTTGGAAAGCCTGAAGTGGCAGAAGTTGGAGGTGTTTGCTTAA  400

seq1  AGGGGCCATGGGGGTTCAGTCTTATCCAAAGGGTCCACCAGGGAGGATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCCATGGGGGTTCAGTCTTATCCAAAGGGTCCACCAGGGAGGATGT  450

seq1  GGTCATAAAATCGCTTCCACAACTGTTGTCAGGATTCAGACTCTCACAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATAAAATCGCTTCCACAACTGTTGTCAGGATTCAGACTCTCACAGG  500

seq1  CTGGTGGCTTCACTGCCTGGGCATGTAGCCCTCTCCACAGTACAGCCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGCTTCACTGCCTGGGCATGTAGCCCTCTCCACAGTACAGCCCAT  550

seq1  AGCAGGCCAGCTGGGTTCCCTTGGGAAGAAGAAAGGAAAAGAAGGGACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCCAGCTGGGTTCCCTTGGGAAGAAGAAAGGAAAAGAAGGGACAG  600

seq1  AAACAAAAGTAATAGGAGGGGGGAGCAGAAGAGAGATGGACCTTACACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAGTAATAGGAGGGGGGAGCAGAAGAGAGATGGACCTTACACAC  650

seq1  ACACACACACACACACACACACACGCACGCACACACACACACACACACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACGCACGCACACACACACACACACACAC  700

seq1  ACACACACACACACGCACCTACGCACGCACAGCCTCATCCCATGACTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACGCACCTACGCACGCACAGCCTCATCCCATGACTCAG  750

seq1  AGATAATATCCTATCACTTTTGCAAAATTCTGCACAAGAGAAAACAGGTA  800
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAT-ATATCCTATCACTTTTGCAAAATTCTGCACAAGAGAAAACAGGTA  799

seq1  GAAGATTGAACCTGCCCTCAGTAGGAGAGAATTCA-TTTAGTGTGCATAG  849
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAAGATTGAACCTGCCCTCAGTAGGAGAGAATTCATTTTAGTGTGCATAG  849

seq1  CAGGAAAGAGCACCTATAGGGAACTAGTGGTAAC-TTGCAAAAGTGTCGA  898
      ||||||||||||||||||||||||||||||| || |||||||||||||||
seq2  CAGGAAAGAGCACCTATAGGGAACTAGTGGTTACTTTGCAAAAGTGTCGA  899

seq1  TACAATGTGACCACAG-TTCAGTGTTATTATAGAAGTTATACTAT-GGGG  946
      ||| |||||||||||| |||||||||||||||||||||||||||| ||||
seq2  TAC-ATGTGACCACAGTTTCAGTGTTATTATAGAAGTTATACTATGGGGG  948

seq1  CTACTCTGAGTAGTCAATTTGCTAACTAGTTATAACTGATGTATACTAAG  996
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTACTCTGAGTAGTCAATTTGCTAACTAG-TATAACTGATGTATACTAAG  997

seq1  AACAA-TTTGGAATTAGACTCAACTGGCCTAC-AGAAGGATA-TTTTTTA  1043
      ||||| |||||||||||||||||||||||||| ||||||||| |||||||
seq2  AACAATTTTGGAATTAGACTCAACTGGCCTACAAGAAGGATATTTTTTTA  1047

seq1  TTAA-TCCTAAACTTAGCCACATTTTATTTAAATAATTCTTT-GCAAAG-  1090
      |||| ||||||||||||||||||||||||||||||||||||| |||||| 
seq2  TTAATTCCTAAACTTAGCCACATTTTATTTAAATAATTCTTTGGCAAAGT  1097

seq1  CTACTAACTAGATTTGTCCTGGTCCTGCCTTCAGTCTAAAAACTGTA  1137
      ||||||||||||||||| ||||| |||| |||||||| |||||||||
seq2  CTACTAACTAGATTTGT-CTGGTTCTGCTTTCAGTCT-AAAACTGTA  1142

seq1: chr8_45896173_45897332
seq2: B6Ng01-195I23.g_66_1219 (reverse)

seq1  GAATAAAAGAAACATAAGTGCAAAAACAATTATGATAACGCTATGA-GTG  49
      |||| |||||||||| ||||| | ||  |||||||||||||||||| |||
seq2  GAATTAAAGAAACAT-AGTGCCACAAACATTATGATAACGCTATGAGGTG  49

seq1  TTTATCTTTGTAAAAATACAGTGTCT-AAATATTTAAATTTAATCTCTAT  98
      |||||  |||| |||||||||  ||| |||||||| ||||||||||||||
seq2  TTTATTCTTGT-AAAATACAGGTTCTAAAATATTT-AATTTAATCTCTAT  97

seq1  TTGCATACATTCAATGTCTGTATTTACATTGTTTAGTAAGTAATATTTTG  148
      |   ||||||||||||||||||||||||||| ||||||||||||||||  
seq2  TGCAATACATTCAATGTCTGTATTTACATTG-TTAGTAAGTAATATTT--  144

seq1  GCGACCATTTATGTTAGAAATTCTGTGGGAACTGTTCTAGAGCTCATTTC  198
      ||||||| |||||||||||||||||||||||||| ||||||||||| |||
seq2  GCGACCA-TTATGTTAGAAATTCTGTGGGAACTG-TCTAGAGCTCA-TTC  191

seq1  TGACATGCATAAGTGAAATAAT-ATATTTAAATGGTCTGCATAAGTACTG  247
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGACATGCATAAGTGAAATAATAATATTTAAATGGTCTGCATAAGTACTG  241

seq1  GCCATGTCTCACCCACACTACCGAGGGCATCTCCTGCGGTTTTTTTGTTT  297
      |||||||||||||||||||||||| |||||||| ||||||||||||||||
seq2  GCCATGTCTCACCCACACTACCGAAGGCATCTCTTGCGGTTTTTTTGTTT  291

seq1  TGTTTTGTTTTGTTTATTCTTATAGTTTCATGAGATAACTCTTCTTATTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTGTTTATTCTTATAGTTTCATGAGATAACTCTTCTTATTC  341

seq1  AACTTGTGCTCACAGAGAAGAAATTATTTTTCAACCTGAATGATTTCCCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTGCTCACAGAGAAGAAATTATTTTTCAACCTGAATGATTTCCCC  391

seq1  AAGATCTTAGACTTAATACACAGCTAAGCTGTGATATAAAGCAAGTTTGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTTAGACTTAATACACAGCTAAGCTGTGATATAAAGCAAGTTTGG  441

seq1  GCTATCAGCTCTTCCCACAGCTACATGTAAGGGCTAAGGGGGTGAATGGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCAGCTCTTCCCACAGCTACATGTAAGGGCTAAGGGGGTGAATGGC  491

seq1  CTGTATGCTCCTTGAAGGTTCTATAATGGATTCTGCTAAAGTAGACCTGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGCTCCTTGAAGGTTCTATAATGGATTCTGCTAAAGTAGACCTGG  541

seq1  AAAATACATATAAACAGAGGAGGCAAATTAATGACACACATGAAGGGGGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACATATAAACAGAGGAGGCAAATTAATGACACACATGAAGGGGGC  591

seq1  GTGAAGTATCATGGAAGTATGAGTACCTAATAATTCAAAGAGAGACAGAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTATCATGGAAGTATGAGTACCTAATAATTCAAAGAGAGACAGAA  641

seq1  GCTGCGTGCCCTTCCTAGGAGACAAAGAACCGAGCTAATACGAACAATTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCGTGCCCTTCCTAGGAGACAAAGAACCGAGCTAATACGAACAATTC  691

seq1  TGAGAAGAAGTAACTGATGCTTAGGAGAGGTGTATTGAACCAAAGAAGAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGAAGTAACTGATGCTTAGGAGAGGTGTATTGAACCAAAGAAGAG  741

seq1  GCACGAATTTGTGTCAGAGTCTAAGTCGGTAGTTCTGGGAAGTTGTGTGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGAATTTGTGTCAGAGTCTAAGTCGGTAGTTCTGGGAAGTTGTGTGT  791

seq1  CACAACTTCTTTAGAAGAAGAACGACCCTCTCACGGGGGTTGCCTAAGAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTTCTTTAGAAGAAGAACGACCCTCTCACGGGGGTTGCCTAAGAC  841

seq1  CAACAGAAAGCGCAGGTATTTACCCTATGATTCATAACAGTAACAAAATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAAAGCGCAGGTATTTACCCTATGATTCATAACAGTAACAAAATT  891

seq1  ATAGTTATGAACTACCAACAAAAATAAAGTTATGGTTGGGGTCATCACAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTATGAACTACCAACAAAAATAAAGTTATGGTTGGGGTCATCACAA  941

seq1  CATGAGGAACTGTATTGAAAGGTCACAGTATTAAAAAGTTTAAGAACCAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGAACTGTATTGAAAGGTCACAGTATTAAAAAGTTTAAGAACCAC  991

seq1  AGGTCCAAGCGGTTTCTGGGTGCAATGTGCTTCCGGGTGCTCATTCCTGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCAAGCGGTTTCTGGGTGCAATGTGCTTCCGGGTGCTCATTCCTGT  1041

seq1  GATCTAAGGCAACCTCCATCCATAGACAGGACAGCTGGGGCTTGAGTAAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAAGGCAACCTCCATCCATAGACAGGACAGCTGGGGCTTGAGTAAG  1091

seq1  TCCTACATGATCTGGCCTTGGAGTAGAAAAAAGAAAAGAAAAAAAGAGAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACATGATCTGGCCTTGGAGTAGAAAAAAGAAAAGAAAAAAAGAGAG  1141

seq1  AGAGAGAGAATTC  1160
      |||||||||||||
seq2  AGAGAGAGAATTC  1154