BAC Information

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BAC

Clone NameB6Ng01-196G20
Chromosome8 (Build37)
Map Location 109,812,540 - 110,010,073
singlet/doubletdoublet
Overlap geneNfat5, Nqo1, Nob1, Wwp2, LOC100042812
Upstream geneSmpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791
Downstream genePsmd7, LOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196G20.bB6Ng01-196G20.g
ACCGA018573GA018574
length1,0461,009
definitionB6Ng01-196G20.b B6Ng01-196G20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,009,031 - 110,010,073)(109,812,540 - 109,813,524)
sequence
gaattcagttgccatggaaatgagtttagagcactaatacaggttataag
gagaaataataagcagaattacatcatccccaataggcataacaagtatg
aacgagctcagactctcagcatagaagatgttaaccaatatgccaaagga
aaccatcagccccccccccacaaagaaacgcagtcagaaaaccccacatc
caaagaagcatgaccaccaggcatcgcgaccgccagagtccctaactgat
aagaggtcacgctctgctcaataggtctccctcacccacaaggctgacca
ccagcccagtcactgtcagacactgctgcctctcctaagaatgcgagtgc
tgcgctccctccagaacaccgtagcagtcactgtcagacactgctgcctc
tccctccagaacaccttatcagtctagagcaggaaaaggaaatttccagg
ttttttgattgaacagttccctgccactagctagtgcatgttcccataac
ttcagggccgtctcaccaacaagggctacttacggggatctgccaccaaa
gcagtttgtactgggggggctggtgccgggtctctggagctatagcagtc
ccactggattctcttgaagggggctgtgatcctggagaatggaacaatca
caagaaaggatagaagtgctgagagaatcggcccttgtttgagagctacc
ccaccaggcagaaaataccctctggatttaacgagttacccaccatgatg
ggacagggtcaccttggcagctgtagtctctggtacaaagaataggaata
tcatcggagatcacacagttggaacctcaaatttaggaacagtgcctcta
cctccagacatcccagatgctaacttagcagtcaggccatatcatcatga
agtgcagcatctctaaggagggggccaagtgagtgcatgaaatgaagaga
ttttcacagtgcaacggagctgtaacgtcgaaggtagatcagtcacttct
ttattctaaaagtcctggctaacggctaggtaaggctaagacaaga
gaattcataacaaccaacataagtattttatagaattaaatgtctggtta
taataagacagagacactttggaacataggggaatattctagacctgatg
caaatagtatggtctaatttcaccttcaggaatatttgctagaacatgtc
ttcagtgtgatactgacacataaacataaccaaatataaatttaattgga
atttcagcacaatgaggtcattgctatttcccaccactatcgactctctt
ttattattataaaggagagttctcagggcggggcaaaatgaacctgtggt
ccaaactttctttggccgattacttaaattgctctggaacatttcctttc
aggttttgtgtttgtttagccaggttccttacaatatgtgtgtgactaaa
aatcatcttaccagcctgaattggaattacaacgggctattggttctgga
aggtcttggtgacaacataaatcttctcttcgggaaggagtttattattt
taatttccttttcatggatggatattggaacctctttcatttacagaaca
tccgggctacactggcctaccagtgccaaagcgaggttcaggaggggtta
aggaacgcactgttgaaaaaaaaatctgccccctcggttaggtaacctga
accacttggagttgaatcttgcctctggtgagattatcaaataacgaggg
aatatggtcttttgtttgagacttaatataaaagaactatacccactgcc
acatccggaacattttcgttccatggaacctattgatgattttgtttttt
aaaagaagtaatttcccccttttaaatgtataaatgatctccattttgac
catcttgcttggcctggctgttatatgaagaatgactgacattgagttga
gtcccacatctatcgatctatgattagcaggaaatgggtgaattgtattt
ggagtctccacgcgaacccctcacgtgtagctccattgaggattcagaag
tcatgttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_110009031_110010073
seq2: B6Ng01-196G20.b_42_1087 (reverse)

seq1  TCTTGTCTTAGCCTTACCTAGCTGTTTGCAGGGCCTTTTAG-ATAAAG-A  48
      |||||||||||||||||||||| ||| ||  || ||||||| |||||| |
seq2  TCTTGTCTTAGCCTTACCTAGCCGTTAGCCAGGACTTTTAGAATAAAGAA  50

seq1  GTGACTTGATCTA-CTTTGGCTTTACAAGCTCTGTTTGCATTGTGAAAAT  97
      ||||| ||||||| ||| | | |||| ||||| | ||||| |||||||||
seq2  GTGAC-TGATCTACCTTCGACGTTAC-AGCTCCG-TTGCACTGTGAAAAT  97

seq1  TTTCTCATTTCATGCACTCACTTGGCCCCCACCTTAGAGAGGCTGAAGTT  147
       |  |||||||||||||||||||||||||| ||||||||| |||| | ||
seq2  CTCTTCATTTCATGCACTCACTTGGCCCCCTCCTTAGAGATGCTGCACTT  147

seq1  CATGATGGATAAGGCAGGACTG-TGTGTTAGCATCTGGGATGTCTTGGAG  196
      |||||| |||| |||  ||||| |  ||||||||||||||||||| |  |
seq2  CATGAT-GATATGGCCTGACTGCTAAGTTAGCATCTGGGATGTCTGGAGG  196

seq1  AAGAGGCACTGTTTCCCAAATTTGA-GTTCCAACTGTGTGATCTCAGATG  245
       |||||||||| |||| |||||||| ||||||||||||||||||| ||||
seq2  TAGAGGCACTG-TTCCTAAATTTGAGGTTCCAACTGTGTGATCTCCGATG  245

seq1  ATAATCCCTATTCTTTGTACCAGAGGCTACAGCTGCCAAGTTGTCCCTGT  295
      || || ||||||||||||||||||| |||||||||||||| || ||||||
seq2  AT-ATTCCTATTCTTTGTACCAGAGACTACAGCTGCCAAGGTGACCCTGT  294

seq1  CCCATCATGGTGGGTAACTCCTAAAATACAGAGGGAATTCTCTGCCTGGT  345
      |||||||||||||||||||| | |||| ||||||| ||| ||||||||||
seq2  CCCATCATGGTGGGTAACTCGTTAAATCCAGAGGGTATTTTCTGCCTGGT  344

seq1  -GGGTAGCTCTCAAACAAGGGCCGATTCTCTCAGCATTTCTATCCTTTCT  394
       ||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGGGTAGCTCTCAAACAAGGGCCGATTCTCTCAGCACTTCTATCCTTTCT  394

seq1  TGTGATTGTTCCATTCTCCAGGATCACAGCCACCTTCAAGAGAATCCAGT  444
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGTGATTGTTCCATTCTCCAGGATCACAGCCCCCTTCAAGAGAATCCAGT  444

seq1  GGGACTGCTATAGCTCCAGAGACCCGGCACCAG-CCCCCCAGTACAAACT  493
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGGACTGCTATAGCTCCAGAGACCCGGCACCAGCCCCCCCAGTACAAACT  494

seq1  GCTTTGGTGGCAGATCCCGGTAAGTAGCCCTTGTTGGTGAGACGGCCCTG  543
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCTTTGGTGGCAGATCCCCGTAAGTAGCCCTTGTTGGTGAGACGGCCCTG  544

seq1  AAGTTATGGGAA-ATGCACTAGCTAGTGGCAGGGAACTGTTCATTC-AGA  591
      |||||||||||| |||||||||||||||||||||||||||||| || | |
seq2  AAGTTATGGGAACATGCACTAGCTAGTGGCAGGGAACTGTTCAATCAAAA  594

seq1  AACCTGGAAATTTCCTTTTCCTGCTCTAGACTGCTAAGGTGTTCTGGAGG  641
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AACCTGGAAATTTCCTTTTCCTGCTCTAGACTGATAAGGTGTTCTGGAGG  644

seq1  GAGAGGCAGCAGTGTCTGACAGTGACTGCTAAGGTGTTCTGGAGGGAGCG  691
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GAGAGGCAGCAGTGTCTGACAGTGACTGCTACGGTGTTCTGGAGGGAGCG  694

seq1  CAGCACTCGCATTCTTAGGAGAGGCAGCAGTGTCTGACAGTGACTGGGCT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTCGCATTCTTAGGAGAGGCAGCAGTGTCTGACAGTGACTGGGCT  744

seq1  GGTGGTCAGCCTTGTGGGTGAGGGAGACCTATTGAGCAGAGCGTGACCTC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTCAGCCTTGTGGGTGAGGGAGACCTATTGAGCAGAGCGTGACCTC  794

seq1  TTATCAGTTAGGGACTCTGGCGGTCGCGATGCCTGGTGGTCATGCTTCTT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGTTAGGGACTCTGGCGGTCGCGATGCCTGGTGGTCATGCTTCTT  844

seq1  TGGATGTGGGGTTTTCTGACTGCGTTTCTTTCTGGGGGGGGGGCTGATGG  891
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGGATGTGGGGTTTTCTGACTGCGTTTCTTTGTGGGGGGGGGGCTGATGG  894

seq1  TTTCCTTTGGCATATTGGTTAACATCTTCTATGCTGAGAGTCTGAGCTCG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTGGCATATTGGTTAACATCTTCTATGCTGAGAGTCTGAGCTCG  944

seq1  TTCATACTTGTTATGCCTATTGGGGATGATGTAATTCTGCTTATTATTTC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACTTGTTATGCCTATTGGGGATGATGTAATTCTGCTTATTATTTC  994

seq1  TCCTTATAACCTGTATTAGTGCTCTAAACTCATTTCCATGGCAACTGAAT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATAACCTGTATTAGTGCTCTAAACTCATTTCCATGGCAACTGAAT  1044

seq1  TC  1043
      ||
seq2  TC  1046

seq1: chr8_109812540_109813524
seq2: B6Ng01-196G20.g_66_1074

seq1  GAATTCATAACAACCAACAGAAGTATTTTATAGAATTAAATGTCTGGTTA  50
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAATTCATAACAACCAACATAAGTATTTTATAGAATTAAATGTCTGGTTA  50

seq1  TAATAAGACAAAGACACTTTGGAACATAGGGGAATATTCTAGACCTGATG  100
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGACAGAGACACTTTGGAACATAGGGGAATATTCTAGACCTGATG  100

seq1  CAAATAGTATGGTCTAATTTCACCTTCAGGAATATTTGCTAGAACATGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGTATGGTCTAATTTCACCTTCAGGAATATTTGCTAGAACATGTC  150

seq1  TTCAGTGTGATACTGACACATAAACATAACCAAATATAAATTTAATTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGTGATACTGACACATAAACATAACCAAATATAAATTTAATTGGA  200

seq1  ATTTCAGCACAATGAGGTCATTGCTATTTCCCACCACTATCGACTCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGCACAATGAGGTCATTGCTATTTCCCACCACTATCGACTCTCTT  250

seq1  TTATTATTATAAAGGAGAGTTCTCAGGGCGGGGCAAAATGAACCTGTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTATAAAGGAGAGTTCTCAGGGCGGGGCAAAATGAACCTGTGGT  300

seq1  CCAAACTTTCTTTGGCCGATTACTTAAATTGCTCTGGAAAATTTCCTTTC  350
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCAAACTTTCTTTGGCCGATTACTTAAATTGCTCTGGAACATTTCCTTTC  350

seq1  AGGTTTTGTGTTTGTTTAGCCAGGTTCCTTACAATATATGTGTGACT-AA  399
      ||||||||||||||||||||||||||||||||||||| ||||||||| ||
seq2  AGGTTTTGTGTTTGTTTAGCCAGGTTCCTTACAATATGTGTGTGACTAAA  400

seq1  AATCATCTTAACAGCCTGAATT-GTATTACAA-GGGC-AATGGTTCT-GT  445
      |||||||||| ||||||||||| | ||||||| |||| | ||||||| | 
seq2  AATCATCTTACCAGCCTGAATTGGAATTACAACGGGCTATTGGTTCTGGA  450

seq1  AGGTCTT-GTGACAACAT-ATTCTTCTCTTC-TGTATGAGTTTATTTATT  492
      ||||||| |||||||||| | ||||||||||  | | |||||||||  ||
seq2  AGGTCTTGGTGACAACATAAATCTTCTCTTCGGGAAGGAGTTTATTATTT  500

seq1  TAATTT-CTTTTCAGTGGTTGATATTTGAACCTCTTTCATTTACAGTACA  541
      |||||| |||||||  | | |||||| ||||||||||||||||||| |||
seq2  TAATTTCCTTTTCATGGATGGATATTGGAACCTCTTTCATTTACAGAACA  550

seq1  TCC-GGCTACACTGTTCATACAAGTGCCTAAGCG-GGTTCAGGAGGGGTT  589
      ||| ||||||||||  | ||| |||||| ||||| |||||||||||||||
seq2  TCCGGGCTACACTG-GCCTACCAGTGCCAAAGCGAGGTTCAGGAGGGGTT  599

seq1  AAAGAACGCACTGCTGATATAAAAA-CTG-CCGCTCTGTTATGTAATCTG  637
      || |||||||||| ||| | ||||| ||| || ||| |||| |||| |||
seq2  AAGGAACGCACTGTTGAAAAAAAAATCTGCCCCCTCGGTTAGGTAACCTG  649

seq1  AACAACTTGGAGTTGAATCTTGCCTCTGGTGAGATTATCAAATAACTAGG  687
      ||| |||||||||||||||||||||||||||||||||||||||||| |||
seq2  AACCACTTGGAGTTGAATCTTGCCTCTGGTGAGATTATCAAATAACGAGG  699

seq1  GAATATGGT-ATTTGATTGGGACGTAATATAAAAGAACTATACACACTGC  736
      |||||||||  |||| ||| ||| ||||||||||||||||||| ||||||
seq2  GAATATGGTCTTTTGTTTGAGACTTAATATAAAAGAACTATACCCACTGC  749

seq1  CACAT-CTGTACATTTT-GTTCCAT-GAACCTATTG-TGATTTTGTTTTT  782
      ||||| | | ||||||| ||||||| |||||||||| |||||||||||||
seq2  CACATCCGGAACATTTTCGTTCCATGGAACCTATTGATGATTTTGTTTTT  799

seq1  TACAAGAAGTAATTTCCACATTTTAAATGTTTAAATGATTTCATTTTTGT  832
      || |||||||||||||| | |||||||||| |||||||| ||  ||||| 
seq2  TAAAAGAAGTAATTTCCCCCTTTTAAATGTATAAATGATCTCCATTTTGA  849

seq1  CGTTCTTGCTTGTCTTGGCTGTTTTATGAAGAAGTACTGACAGTGAGTTG  882
      |  ||||||||| | |||||||| |||||||||  ||||||| |||||||
seq2  CCATCTTGCTTGGCCTGGCTGTTATATGAAGAATGACTGACATTGAGTTG  899

seq1  TGTCTAAAATATATCATTATATGAATTACAGGTAAAGGG-GAATGGAATT  931
       |||  | || ||||  | ||||| |  |||| || ||| |||| | |||
seq2  AGTCCCACATCTATCGATCTATGATTAGCAGGAAATGGGTGAATTGTATT  949

seq1  T-GAGACATCA-GTGAACACC---CAGGGAAATACTATGAGGA-TCAGAA  975
      | ||| |  || | |||| ||   |  | |  | |  |||||| ||||||
seq2  TGGAGTCTCCACGCGAACCCCTCACGTGTAGCTCCATTGAGGATTCAGAA  999

seq1  GTCATGTTTA  985
      ||||||||||
seq2  GTCATGTTTA  1009