BAC Information

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BAC

Clone NameB6Ng01-197H06
Chromosome8 (Build37)
Map Location 19,162,826 - 19,163,952
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040466, Mcph1, Angpt2, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11
Downstream geneDefb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561, LOC624198, EG665730, 4930467E23Rik, LOC100041567, LOC547150, LOC100040599, EG665822, 6820431F20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197H06.bB6Ng01-197H06.g
ACCGA019313GA019314
length1,2221,126
definitionB6Ng01-197H06.b B6Ng01-197H06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctctatttaaaagaaaccatctttgtaactccctggcacattct
attctgtacagtcaactttatcaatgcactaattgccacttgctgcataa
aaatgatcccaacactctctaaaataaaaggaaattctctgtaaaaaaaa
aaaaggtatagactaacatactggatatgtaaacatgatccaacattttg
ctgcatgcaggaaacccacctcagtgacaaagacagacactacttcaaag
taaaaggctggaaaaaatttatccaagcaaatggtccaaagaagcaaact
agagttgccactctaatattgaataaaaccaactttcaacttaaagttat
caaaaaaagatgagggacacttcatacacatcaaaggtaaaatctaccaa
gatgaactttcaattctgaacatctatgctccaaatgcaatggcacccac
attcataaaagaaactttaaaactcaaagcacacattgcaccccacacaa
taatagtgggagatttcaacaccccactctcatcaatggacagatcatgg
caaacagaaactaaacagagacacagtgaaactaacagaagttatgaacc
aaatgaatttaacagatatttataaaacattttatgctaaaagaaaataa
tataccttctcacaacctcacattactgtctccaaaattgaccatataat
tggtcacaaaacaggcttcaacagatacaagaagattgaaataatcccat
gcatcctataagatcaccagggactaaggctggtcttcaataacaacaaa
aataatagaagcccacatacatgtggaagctgaagaacactctactcaat
gataacttggtcaaggaagaaataaataaagaaattaaagactttttaga
atttaatgaaaatgaagccacaacataaccaaacttatgggacacaatga
aagcagtgttaagaggaaaactcatagctgtgagtgcctcaaaaaaagaa
acttgagagaagaatacactaccagccttgacagcacactgaaagcttgt
agaacaaaaaagagcaaatagagactagagacactagagcaaggaattat
caactcagactgaaatcaacccagtagaacaaaagaccttattacagatc
aacgctcagactgcttctttggagtagtacagatacgttaaacccttaga
accactttacccacggggggtt
gaattctcagactcagctgaaggaagcacatttccttgtgggcaggacac
atgacagcctccaacggagtcaccagcagagcaacctctagtctattgtg
agctcacgcacactgggcgtctcccaggaagcttgggaacctggcaggtt
cacctggcctccagccaccccgatgactcaggaacttagagatccattca
gtgtctgtgggctgacaaagatctgcttttccttggaggggagaaaatgg
cagaggactgtggtagacctcctagcttctagagccttggattcctttgg
aagaggacttgtgtggtcttgctaaaccagagtctaggcaggagaagact
ttgtgttggcctgttatgtggaaggactctgaagacagttccaaaaataa
acaaataaataaataaacttaatgttttgacatgttgtgatactgctgat
aaagttatcttctggatcccaggggggaatgtgttgaccatttcttttat
aaatgtgtgtctcatctggctccaagagagttgtattgaatgactgtttc
agccccaggaggtagggtttggcttggaaaggtgtctggtggggctaata
ctataatctctcccactatagcagggtaatgggtggaaagaaatagcaag
tcaccccggggacactaggggaccacccttcatgtctttgtgatcctcta
aggcagtgattctcaacctgcaggtcacaaatcatattacaatttctaac
agtagcaaaattacagttatgaagtagcaatgaagatcatttttatggct
gggggtcaccacaacataaagaactgtattaaagggccacagtgttagga
aggctgagaacccctgccaaggatgcgacttcacacacagcagactctag
gtgaaccatcagaggagctgagctttgaaggagacctgtgttcagcttgg
attaactatttcaagaattcacgttgtattttgttctttagttagtaaag
ttgtaaaatgctagtgtttatacggcagaccctttaaatattccacctgg
tctttaaattcaaatctagtgagaattaaccttcctggaaacgaattttg
aggcagaagctgagtcctataacagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_19162826_19163952
seq2: B6Ng01-197H06.g_63_1188 (reverse)

seq1  CCTGTTATAGGACTCAGCCTTCTGCCCTCAAAATCTGTTTCCAGGAATGT  50
      ||||||||||||||||| |||||| |||||||||  ||||||||||| ||
seq2  CCTGTTATAGGACTCAG-CTTCTG-CCTCAAAATTCGTTTCCAGGAAGGT  48

seq1  T-ATTCTCACTAGATTTTGAATTTAAAGGCCCGGTGG-ATATATAAAGGG  98
      | |||||||||||| ||||||||||||| || ||||| |||| |||||||
seq2  TAATTCTCACTAGA-TTTGAATTTAAAGACCAGGTGGAATATTTAAAGGG  97

seq1  TCTGGCCGTTATAAACACTAGCATTTTACACTTTTACTAACTAAAGA--C  146
      ||| |||| |||||||||||||||||||||  |||||||||||||||   
seq2  TCT-GCCG-TATAAACACTAGCATTTTACAACTTTACTAACTAAAGAACA  145

seq1  AAATAC-ACGTGAATTCTTGAAATAGTTAATCCAAGCCTGAACACAGGTC  195
      |||||| ||||||||||||||||||||||||||||| |||||||||||||
seq2  AAATACAACGTGAATTCTTGAAATAGTTAATCCAAG-CTGAACACAGGTC  194

seq1  TCCTTCAAAGCTCAGCTCCTCTGATGGTTCACCTAGAGTCTGCTGTGTGT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAAAGCTCAGCTCCTCTGATGGTTCACCTAGAGTCTGCTGTGTGT  244

seq1  GAAGTCGCATCCTTGGCAGGGGTTCTCAGCCTTCCTAACACTGTGGCCCT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCGCATCCTTGGCAGGGGTTCTCAGCCTTCCTAACACTGTGGCCCT  294

seq1  TTAATACAGTTCTTTATGTTGTGGTGACCCCCAGCCATAAAAATGATCTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACAGTTCTTTATGTTGTGGTGACCCCCAGCCATAAAAATGATCTT  344

seq1  CATTGCTACTTCATAACTGTAATTTTGCTACTGTTAGAAATTGTAATATG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTACTTCATAACTGTAATTTTGCTACTGTTAGAAATTGTAATATG  394

seq1  ATTTGTGACCTGCAGGTTGAGAATCACTGCCTTAGAGGATCACAAAGACA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGACCTGCAGGTTGAGAATCACTGCCTTAGAGGATCACAAAGACA  444

seq1  TGAAGGGTGGTCCCCTAGTGTCCCCGGGGTGACTTGCTATTTCTTTCCAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGTGGTCCCCTAGTGTCCCCGGGGTGACTTGCTATTTCTTTCCAC  494

seq1  CCATTACCCTGCTATAGTGGGAGAGATTATAGTATTAGCCCCACCAGACA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTACCCTGCTATAGTGGGAGAGATTATAGTATTAGCCCCACCAGACA  544

seq1  CCTTTCCAAGCCAAACCCTACCTCCTGGGGCTGAAACAGTCATTCAATAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCAAGCCAAACCCTACCTCCTGGGGCTGAAACAGTCATTCAATAC  594

seq1  AACTCTCTTGGAGCCAGATGAGACACACATTTATAAAAGAAATGGTCAAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCTTGGAGCCAGATGAGACACACATTTATAAAAGAAATGGTCAAC  644

seq1  ACATTCCCCCCTGGGATCCAGAAGATAACTTTATCAGCAGTATCACAACA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCCCCCTGGGATCCAGAAGATAACTTTATCAGCAGTATCACAACA  694

seq1  TGTCAAAACATTAAGTTTATTTATTTATTTGTTTATTTTTGGAACTGTCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAACATTAAGTTTATTTATTTATTTGTTTATTTTTGGAACTGTCT  744

seq1  TCAGAGTCCTTCCACATAACAGGCCAACACAAAGTCTTCTCCTGCCTAGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTCCTTCCACATAACAGGCCAACACAAAGTCTTCTCCTGCCTAGA  794

seq1  CTCTGGTTTAGCAAGACCACACAAGTCCTCTTCCAAAGGAATCCAAGGCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTTTAGCAAGACCACACAAGTCCTCTTCCAAAGGAATCCAAGGCT  844

seq1  CTAGAAGCTAGGAGGTCTACCACAGTCCTCTGCCATTTTCTCCCCTCCAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGCTAGGAGGTCTACCACAGTCCTCTGCCATTTTCTCCCCTCCAA  894

seq1  GGAAAAGCAGATCTTTGTCAGCCCACAGACACTGAATGGATCTCTAAGTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGCAGATCTTTGTCAGCCCACAGACACTGAATGGATCTCTAAGTT  944

seq1  CCTGAGTCATCGGGGTGGCTGGAGGCCAGGTGAACCTGCCAGGTTCCCAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTCATCGGGGTGGCTGGAGGCCAGGTGAACCTGCCAGGTTCCCAA  994

seq1  GCTTCCTGGGAGACGCCCAGTGTGCGTGAGCTCACAATAGACTAGAGGTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTGGGAGACGCCCAGTGTGCGTGAGCTCACAATAGACTAGAGGTT  1044

seq1  GCTCTGCTGGTGACTCCGTTGGAGGCTGTCATGTGTCCTGCCCACAAGGA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCTGGTGACTCCGTTGGAGGCTGTCATGTGTCCTGCCCACAAGGA  1094

seq1  AATGTGCTTCCTTCAGCTGAGTCTGAGAATTC  1127
      ||||||||||||||||||||||||||||||||
seq2  AATGTGCTTCCTTCAGCTGAGTCTGAGAATTC  1126