BAC Information

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BAC

Clone NameB6Ng01-197J13
Chromosome8 (Build37)
Map Location 108,994,390 - 109,101,937
singlet/doubletdoublet
Overlap gene6030452D12Rik, Cdh3, LOC100042734
Upstream gene2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90
Downstream geneCdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197J13.bB6Ng01-197J13.g
ACCGA019417GA019418
length1,146528
definitionB6Ng01-197J13.b B6Ng01-197J13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,100,780 - 109,101,937)(108,994,390 - 108,994,923)
sequence
gaattccaggatagccagggctataccatgagatcttgtctcaaataaat
taaatacacaaacaaaagaaagaaaaagaaaaaattggaggaaggaagga
gagagagagagaagagagagagagaaagagaacctcgttaagattggcta
gaagaagacaagaagcatcctcgctaaggagcaactaattccactgcctg
gcatgaagaaaggaaaggtttaataattcagagaaggcaggccgggtggc
tcatgcctgtaatcccagaactcaggaggctgagacaggattgtctaggc
tacattgcaagtttcagactaaccttggctatggtgagcccctgtccaaa
aaaaaaaaaagctctttgcaggtgtggaaggacaagtagcggaggcaggg
acactgagaaggtgtcactgtggcaaagccaacagtccaggaatggggaa
ggagcgtgtcttctgtggctgtgtgacctgtatgtggaagtgggacagat
cagcaggagctgagatttttggacaaagtccaggactgaaaggactttaa
acagcctgctacttgtatttcactgagggggtcacaggaatgcaaggacg
tgtattggcacagagggaggaggactgttctaagagactggcctgggagc
acgggcttctgtagttctctccactggagttcacagtctgacctcagcca
gaggaagtaggcacaaaatgggtggggcagtgcttgtcagccagcccgaa
atccaagccctgatattattccctggtggcttctgagagagatgactaat
atctctaagataagaaaggcttctgatgcaacctgatattcttgttggtg
gcgactgggaacccacgtttagaggagctgaattactacaggggagaaaa
gagcagttatgttattaaagtgaaatgacttatatcattcctggtttcct
gactatgggctatgatgtgaccagctgtctcctgtcttcaggctcctgca
ggacttccccactagtatagactgttccctagaactggagccaaaataac
caccccccccatttttttcgtttcttgaaacaggtttctctgtggagctc
tgccgtcctggaactcactctagaacaagctgccttgaactcgaaa
actttgcagaccaggctggcctcgaacacagaaattcacttgcctctgcc
tccccagtgctggaattaaaggcgtgcaccactaccatccagccagaggt
ttttcgttttgagatgcatatgtatatgccaaaaaaaataggaaaaatat
acagatatgctaaaaagaaaatggaaaaggaagacataattacttatatt
tatgccacttagaaatgtggtttcctaatcccaggacagccagggctata
cagagaaaccctgtctcaaaaaaaccacaaaagaaagaaaggaaggaagg
aaggaaggaaggaaggaagggagagagagagagagagagagagagagaga
gagagagagaaagaaagatagaaagaaagaaagaaagaaagaaagaaaga
aagaaagaaagaaaaggaaggtggtttccaaccgggtggtggtgcacgcc
tttaatcccagcgctccagaggcagaggcaggcagatgtttgagagatgg
aggacagccaggtctgcatactgaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_109100780_109101937
seq2: B6Ng01-197J13.b_44_1189 (reverse)

seq1  TTTCTGAGTTCAAGGCCAGCCTGGTCTAGGAGTGAGTTCCAGGACAGCCA  50
      |||| |||||||||| |||| || |||| |||||||||||||||| | ||
seq2  TTTC-GAGTTCAAGG-CAGCTTGTTCTA-GAGTGAGTTCCAGGAC-GGCA  46

seq1  GAGCTACACAGAGAAACCCTGTTTCAAGGAAAAAGGAAAAAAAAAGGGGG  100
      ||||| |||||||||| |||||||||||   ||| |  ||||||| ||||
seq2  GAGCTCCACAGAGAAA-CCTGTTTCAAG---AAACG--AAAAAAATGGGG  90

seq1  GGGGTGGTTATTTTTGGCTCCCAGTTCTAGGGAACAGTCTATACTAGTGG  150
      |||||||||| |||||||| ||||||||||||||||||||||||||||||
seq2  GGGGTGGTTA-TTTTGGCT-CCAGTTCTAGGGAACAGTCTATACTAGTGG  138

seq1  GGAAGTCCTGGCAGGAGCTTG-AGACAGGAGACAGCTGGTCACATCATAG  199
      ||||||||| |||||||| || ||||||||||||||||||||||||||||
seq2  GGAAGTCCT-GCAGGAGCCTGAAGACAGGAGACAGCTGGTCACATCATAG  187

seq1  -CCATAGTCAGGAAACCAGAAATGATATAAGTCATTTCACTTTAATAACA  248
       |||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCCATAGTCAGGAAACCAGGAATGATATAAGTCATTTCACTTTAATAACA  237

seq1  TAACTGCTCTTTTCTCCCCTGTAGTAATTCAGCTCCTCTAAACGTGGGTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGCTCTTTTCTCCCCTGTAGTAATTCAGCTCCTCTAAACGTGGGTT  287

seq1  CCCCAGTCGCCACCAACAAGAATATCAGGTTGCATCAGAAGCCTTTCTTA  348
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CCCAGTCGCCACCAACAAGAATATCAGGTTGCATCAGAAGCCTTTCTTA  336

seq1  TCTTAGAGATATTAGTCATCTCTCTCAGAAGCCACCAGGGAATAATATCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGAGATATTAGTCATCTCTCTCAGAAGCCACCAGGGAATAATATCA  386

seq1  GGGCTTGGATTTCGGGCTGGCTGACAAGCACTGCCCCACCCATTTTGTGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTGGATTTCGGGCTGGCTGACAAGCACTGCCCCACCCATTTTGTGC  436

seq1  CTACTTCCTCTGGCTGAGGTCAGACTGTGAACTCCAGTGGAGAGAACTAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCCTCTGGCTGAGGTCAGACTGTGAACTCCAGTGGAGAGAACTAC  486

seq1  AGAAGCCCGTGCTCCCAGGCCAGTCTCTTAGAACAGTCCTCCTCCCTCTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCCGTGCTCCCAGGCCAGTCTCTTAGAACAGTCCTCCTCCCTCTG  536

seq1  TGCCAATACACGTCCTTGCATTCCTGTGACCCCCTCAGTGAAATACAAGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAATACACGTCCTTGCATTCCTGTGACCCCCTCAGTGAAATACAAGT  586

seq1  AGCAGGCTGTTTAAAGTCCTTTCAGTCCTGGACTTTGTCCAAAAATCTCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCTGTTTAAAGTCCTTTCAGTCCTGGACTTTGTCCAAAAATCTCA  636

seq1  GCTCCTGCTGATCTGTCCCACTTCCACATACAGGTCACACAGCCACAGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGCTGATCTGTCCCACTTCCACATACAGGTCACACAGCCACAGAA  686

seq1  GACACGCTCCTTCCCCATTCCTGGACTGTTGGCTTTGCCACAGTGACACC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACGCTCCTTCCCCATTCCTGGACTGTTGGCTTTGCCACAGTGACACC  736

seq1  TTCTCAGTGTCCCTGCCTCCGCTACTTGTCCTTCCACACCTGCAAAGAGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGTGTCCCTGCCTCCGCTACTTGTCCTTCCACACCTGCAAAGAGC  786

seq1  TTTTTTTTTTTTTGGACAGGGGCTCACCATAGCCAAGGTTAGTCTGAAAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTGGACAGGGGCTCACCATAGCCAAGGTTAGTCTGAAAC  836

seq1  TTGCAATGTAGCCTAGACAATCCTGTCTCAGCCTCCTGAGTTCTGGGATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATGTAGCCTAGACAATCCTGTCTCAGCCTCCTGAGTTCTGGGATT  886

seq1  ACAGGCATGAGCCACCCGGCCTGCCTTCTCTGAATTATTAAACCTTTCCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCATGAGCCACCCGGCCTGCCTTCTCTGAATTATTAAACCTTTCCT  936

seq1  TTCTTCATGCCAGGCAGTGGAATTAGTTGCTCCTTAGCGAGGATGCTTCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCATGCCAGGCAGTGGAATTAGTTGCTCCTTAGCGAGGATGCTTCT  986

seq1  TGTCTTCTTCTAGCCAATCTTAACGAGGTTCTCTTTCTCTCTCTCTCTTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTTCTAGCCAATCTTAACGAGGTTCTCTTTCTCTCTCTCTCTTC  1036

seq1  TCTCTCTCTCTCCTTCCTTCCTCCAATTTTTTCTTTTTCTTTCTTTTGTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCCTTCCTTCCTCCAATTTTTTCTTTTTCTTTCTTTTGTT  1086

seq1  TGTGTATTTAATTTATTTGAGACAAGATCTCATGGTATAGCCCTGGCTAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATTTAATTTATTTGAGACAAGATCTCATGGTATAGCCCTGGCTAT  1136

seq1  CCTGGAATTC  1158
      ||||||||||
seq2  CCTGGAATTC  1146

seq1: chr8_108994390_108994923
seq2: B6Ng01-197J13.g_71_604

seq1  GAATTCACTTTGCAGACCAGGCTGGCCTCGAACACAGAAATTCACTTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGCAGACCAGGCTGGCCTCGAACACAGAAATTCACTTGCC  50

seq1  TCTGCCTCCCCAGTGCTGGAATTAAAGGCGTGCACCACTACCATCCAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCCAGTGCTGGAATTAAAGGCGTGCACCACTACCATCCAGCC  100

seq1  AGAGGTTTTTCGTTTTGAGATGCATATGTATATGCCAAAAAAAATAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTTTTCGTTTTGAGATGCATATGTATATGCCAAAAAAAATAGGAA  150

seq1  AAATATACAGATATGCTAAAAAGAAAATGGAAAAGGAAGACATAATTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATACAGATATGCTAAAAAGAAAATGGAAAAGGAAGACATAATTACT  200

seq1  TATATTTATGCCACTTAGAAATGTGGTTTCCTAATCCCAGGACAGCCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTATGCCACTTAGAAATGTGGTTTCCTAATCCCAGGACAGCCAGG  250

seq1  GCTATACAGAGAAACCCTGTCTCAAAAAAACCACAAAAGAAAGAAAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATACAGAGAAACCCTGTCTCAAAAAAACCACAAAAGAAAGAAAGGAA  300

seq1  GGAAGGAAGGAAGGAAGGAAGGAAGGGAGAGAGAGAGAGAGAGAGAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAGGAAGGAAGGAAGGAAGGGAGAGAGAGAGAGAGAGAGAGAGA  350

seq1  GAGAGAGAGAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  400
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAAAGAAAGATAGAAAGAAAGAAAGAAAGAAAGAAA  400

seq1  GAAAGAAAGAAAGAAAGAAAAGGAAGGTGGTTTCCAACCGGGTGGTGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAAAAGGAAGGTGGTTTCCAACCGGGTGGTGGTG  450

seq1  CACGCCTTTAATCCCAGCGCTCCAGAGGCAGAGGCAGGCAGATGTTTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCTTTAATCCCAGCGCTCCAGAGGCAGAGGCAGGCAGATGTTTGAG  500

seq1  AGATGGAGGACAGCCAGGTCTGCAGACTGAATTT  534
      |||||||||||||||||||||||| |||||||||
seq2  AGATGGAGGACAGCCAGGTCTGCATACTGAATTT  534