BAC Information

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BAC

Clone NameB6Ng01-197P04
Chromosome8 (Build37)
Map Location 105,204,644 - 105,339,561
singlet/doubletdoublet
Overlap geneCdh11
Upstream genenone
Downstream geneEG667618, LOC100041368, 1600027J07Rik, LOC100041397
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197P04.bB6Ng01-197P04.g
ACCGA019674GA019675
length1,178950
definitionB6Ng01-197P04.b B6Ng01-197P04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,204,644 - 105,205,846)(105,338,614 - 105,339,561)
sequence
gaattccagcacagcccaacctagcaaggtgctgtatttatagagaaaaa
attctaaaaggtcaagtcttcattgagttttgtgaatcaattaattaaat
tatgctgatcaattaacactacagtgtcaactaataggtcaaattcccat
tgactcactggaggatctattaatgctattgaagtcaattacagctacag
catcaatttgttcttttatggtctgacgtctccctcaccagctcagcatc
ctatcttgctggacagcttttcataggatgctttccagtttcaccccaat
tacaagaagaaaaattgaacagtaaacctgttgtaggcagcatattattg
cttcttcaaacccaaccagcacactcctactcattagcagtaagatggag
ccattggcagtttgccttcccaaattccttgtgtttctctgacctagagt
ccctctagctcccagacttcttgaatttcagggttctagtacaggaaata
aatttccccttatataatattctttgattactccccccacttaaaattca
tcgttccttgtttagaagtatctgcttcttcttggtggtatccagagtcc
aggtgttctcaaaaacacatgcattctctattaacccattacacatgggt
aaacacagagtgagaacctagattcctcctattttcccagggaggcaaaa
tgcaagcctgtcactgttgctaaccagattgtgcacatgtgccttgaaac
tggagatgacaagacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggtgt
ggggcagggaaacactcagagagaaaggaagtagagttacttagccattt
ggctttagtagtcttgggcatacgagggctgatagacttctttttcacat
agcaaatcccttttctcttggtagtctgacttagccttttcaagtctttg
gtcttacaccaagataatatttgggacatgctgcagatacaaaggtgtct
gctatcatccaaatagaactctccataggatactctgtctcttctcagaa
aaaggatgaagcctagtatttgttgtttacagatgcatggatagtaaatg
cagtatgaggataaggtaagatgccttgcctgtcacaccaatcctatcgt
cagtcagtattataggttaacactgaca

gaattctggaggctatgttttggtagaatcatcatttaaaggtagatgac
atttttgggatagaagtgcctcactcaggctagaatgaaccaagaagtga
atgggagaaaaatccgtttttatcctcatatactctacacactggaagga
aagggaagcaccagcccacatcctatacagagtagcagtgcttgtgcaaa
acctgcaggcatatgacagaatgtctaagattacttcctaaatcacatcc
ataagctatttgtgaggttggaagagtacctcaaaaggaataaagaaaac
agccaatatcagtaatccaaggtaagtccaaggtggctgttaggaaagaa
tacagagatgtatgttttaggaacatataaaggacagagaaggtaaaaaa
gcaggcagaggcaaaagaagagagagagagagagagagagagagagagag
agagagagagagcagaattacatggaatattggcaatttgatggggttca
gaatctccatgggaacataccactgggtgtgtctacaaggtccttccaga
gatgttttgcagagcaaagtatgcctaccttgaatgtagttgacaccatc
ttatagacttcagtcccaaagtgattaaaatttagccaacactgaatatg
agcattaatttccctctgcttttgattggtattgcattgtgacaacctaa
ctaatgttttctgctattatgccttactcgactggatagactgtatcctt
ccagtgtgattcagaaaaagctcttctttctttaaattccttctcttagg
cattacattcccaaaagtgagtgtgcggaggggaatccaacaagctggtt
attaagctgttgtaacttgtgtgttgtttttcagaaggagaaagagatgg
cctggcaggccaaacacctccaatttaggaaaactttgcttattcactct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_105204644_105205846
seq2: B6Ng01-197P04.b_46_1223

seq1  GAATTCCAGCACAGCCCAACCTAGCAAGGTGCTGTATTTATAGAGAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCACAGCCCAACCTAGCAAGGTGCTGTATTTATAGAGAAAAA  50

seq1  ATTCTAAAAGGTCAAGTCTTCATTGAGTTTTGTGAATCAATTAATTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAAAGGTCAAGTCTTCATTGAGTTTTGTGAATCAATTAATTAAAT  100

seq1  TATGCTGATCAATTAACACTACAGTGTCAACTAATAGGTCAAATTCCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGATCAATTAACACTACAGTGTCAACTAATAGGTCAAATTCCCAT  150

seq1  TGACTCACTGGAGGATCTATTAATGCTATTGAAGTCAATTACAGCTACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCACTGGAGGATCTATTAATGCTATTGAAGTCAATTACAGCTACAG  200

seq1  CATCAATTTGTTCTTTTATGGTCTGACGTCTCCCTCACCAGCTCAGCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATTTGTTCTTTTATGGTCTGACGTCTCCCTCACCAGCTCAGCATC  250

seq1  CTATCTTGCTGGACAGCTTTTCATAGGATGCTTTCCAGTTTCACCCCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTGCTGGACAGCTTTTCATAGGATGCTTTCCAGTTTCACCCCAAT  300

seq1  TACAAGAAGAAAAATTGAACAGTAAACCTGTTGTAGGCAGCATATTATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGAAGAAAAATTGAACAGTAAACCTGTTGTAGGCAGCATATTATTG  350

seq1  CTTCTTCAAACCCAACCAGCACACTCCTACTCATTAGCAGTAAGATGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCAAACCCAACCAGCACACTCCTACTCATTAGCAGTAAGATGGAG  400

seq1  CCATTGGCAGTTTGCCTTCCCAAATTCCTTGTGTTTCTCTGACCTAGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGGCAGTTTGCCTTCCCAAATTCCTTGTGTTTCTCTGACCTAGAGT  450

seq1  CCCTCTAGCTCCCAGACTTCTTGAATTTCAGGGTTCTAGTACAGGAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTAGCTCCCAGACTTCTTGAATTTCAGGGTTCTAGTACAGGAAATA  500

seq1  AATTTCCCCTTATATAATATTCTTTGATTACTCCCCCCACTTAAAATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCCCTTATATAATATTCTTTGATTACTCCCCCCACTTAAAATTCA  550

seq1  TCGTTCCTTGTTTAGAAGTATCTGCTTCTTCTTGGTGGTATCCAGAGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTCCTTGTTTAGAAGTATCTGCTTCTTCTTGGTGGTATCCAGAGTCC  600

seq1  AGGTGTTCTCAAAAACACATGCATTCTCTATTAACCCATTACACATGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTCTCAAAAACACATGCATTCTCTATTAACCCATTACACATGGGT  650

seq1  AAACACAGAGTGAGAACCTAGATTCCTCCTATTTTCCCAGGGAGGCAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAGAGTGAGAACCTAGATTCCTCCTATTTTCCCAGGGAGGCAAAA  700

seq1  TGCAAGCCTGTCACTGTTGCTAACCAGATTGTGCACATGTGCCTTGAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGCCTGTCACTGTTGCTAACCAGATTGTGCACATGTGCCTTGAAAC  750

seq1  TGGAGATGACAAGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGTG  800
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGGAGATGACAAGAC-AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGTG  799

seq1  TGGGGCAGGGAAACACTCAGAGAGAAAGGAAGTAGAGTTACTTAGCCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCAGGGAAACACTCAGAGAGAAAGGAAGTAGAGTTACTTAGCCATT  849

seq1  TGGCTTTAGTAGTCTTGGGCATACGAGGGCTGATAGACTTCTTTTTCACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTAGTAGTCTTGGGCATACGAGGGCTGATAGACTTCTTTTTCACA  899

seq1  TAGCAAATCCCTTTTCTCTTGGTAGTCTGACTTAGCCTTTTCAAGTCTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAATCCCTTTTCTCTTGGTAGTCTGACTTAGCCTTTTCAAGTCTTT  949

seq1  GGTCTTACACCAAGATAATATTT-GGACATGCTGCAGATACAAAGGTGTC  999
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GGTCTTACACCAAGATAATATTTGGGACATGCTGCAGATACAAAGGTGTC  999

seq1  TGCTATCATCCAAATAGAACTTCTCCATAGGATTACTCCTGTCTCTTCTC  1049
      |||||||||||||||||||| ||||||||||| |||| ||||||||||||
seq2  TGCTATCATCCAAATAGAAC-TCTCCATAGGA-TACT-CTGTCTCTTCTC  1046

seq1  AAGAAATAGGGAATTGAAGCCCTTAGTATTTGTTGTTTACAGATGCATTG  1099
       ||||| |||    |||||||  |||||||||||||||||||||||||  
seq2  -AGAAAAAGG---ATGAAGCC--TAGTATTTGTTGTTTACAGATGCAT--  1088

seq1  GAATATGTAAAATGCAGTATGAAGGAATAAAGGTAAAAGATGCTTTG-CT  1148
      | ||| || |||||||||||| ||||   |||||  ||||||| ||| ||
seq2  GGATA-GT-AAATGCAGTATG-AGGA--TAAGGT--AAGATGCCTTGCCT  1131

seq1  GTCACACACCAACCTCATCCCTCACATTAAATACATTTATAGTTTAACAC  1198
      ||  |||||||| |  |||     || | | ||   |||||| |||||||
seq2  GT--CACACCAATCCTATC---GTCAGTCAGTA---TTATAGGTTAACAC  1173

seq1  TGACA  1203
      |||||
seq2  TGACA  1178


seq1: chr8_105338614_105339561
seq2: B6Ng01-197P04.g_65_1014 (reverse)

seq1  AGAGTGAATAGGC-AAGTTTTC--TAATTGAGGGTGTCTGGGCCTTGCCA  47
      |||||||||| || ||||||||   |||||  ||||| |||  | |||||
seq2  AGAGTGAATAAGCAAAGTTTTCCTAAATTGGAGGTGTTTGG--CCTGCCA  48

seq1  GGCCATCTCCTTTCTACCTTCTAGAAAAC-ACACAC-AGTTACAACAGCT  95
      |||||||| |||||| ||||||  ||||| |||||| |||||||||||||
seq2  GGCCATCT-CTTTCT-CCTTCTGAAAAACAACACACAAGTTACAACAGCT  96

seq1  TAATAACCAGCTTGTTGGATTCCCCTCCGCACACTCACTTTGGGGAATGT  145
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TAATAACCAGCTTGTTGGATTCCCCTCCGCACACTCACTTTTGGGAATGT  146

seq1  AATGCCTAAGAGAAGGAATTTAAAGAAAGAAGAGCTTTTTCTGAATCACA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTAAGAGAAGGAATTTAAAGAAAGAAGAGCTTTTTCTGAATCACA  196

seq1  CTGGAAGGATACAGTCTATCCAGTCGAGTAAGGCATAATAGCAG-AAACA  244
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTGGAAGGATACAGTCTATCCAGTCGAGTAAGGCATAATAGCAGAAAACA  246

seq1  TTAGTTAGGTTGTCACAATGCAATACCAATCAAAAGCAGAGGGAAATTAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTAGGTTGTCACAATGCAATACCAATCAAAAGCAGAGGGAAATTAA  296

seq1  TGCTCATATTCAGTGTTGGCTAAATTTTAATCACTTTGGGACTGAAGTCT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATATTCAGTGTTGGCTAAATTTTAATCACTTTGGGACTGAAGTCT  346

seq1  ATAAGATGGTGTCAACTACATTCAAGGTAGGCATACTTTGCTCTGCAAAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATGGTGTCAACTACATTCAAGGTAGGCATACTTTGCTCTGCAAAA  396

seq1  CATCTCTGGAAGGACCTTGTAGACACACCCAGTGGTATGTTCCCATGGAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTGGAAGGACCTTGTAGACACACCCAGTGGTATGTTCCCATGGAG  446

seq1  ATTCTGAACCCCATCAAATTGCCAATATTCCATGTAATTCTGCTCTCTCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAACCCCATCAAATTGCCAATATTCCATGTAATTCTGCTCTCTCT  496

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTTTTGCCTCTGC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTTTTGCCTCTGC  546

seq1  CTGCTTTTTTACCTTCTCTGTCCTTTATATGTTCCTAAAACATACATCTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTTTTACCTTCTCTGTCCTTTATATGTTCCTAAAACATACATCTC  596

seq1  TGTATTCTTTCCTAACAGCCACCTTGGACTTACCTTGGATTACTGATATT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCTTTCCTAACAGCCACCTTGGACTTACCTTGGATTACTGATATT  646

seq1  GGCTGTTTTCTTTATTCCTTTTGAGGTACTCTTCCAACCTCACAAATAGC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTTTCTTTATTCCTTTTGAGGTACTCTTCCAACCTCACAAATAGC  696

seq1  TTATGGATGTGATTTAGGAAGTAATCTTAGACATTCTGTCATATGCCTGC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGATGTGATTTAGGAAGTAATCTTAGACATTCTGTCATATGCCTGC  746

seq1  AGGTTTTGCACAAGCACTGCTACTCTGTATAGGATGTGGGCTGGTGCTTC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTGCACAAGCACTGCTACTCTGTATAGGATGTGGGCTGGTGCTTC  796

seq1  CCTTTCCTTCCAGTGTGTAGAGTATATGAGGATAAAAACGGATTTTTCTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCTTCCAGTGTGTAGAGTATATGAGGATAAAAACGGATTTTTCTC  846

seq1  CCATTCACTTCTTGGTTCATTCTAGCCTGAGTGAGGCACTTCTATCCCAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCACTTCTTGGTTCATTCTAGCCTGAGTGAGGCACTTCTATCCCAA  896

seq1  AAATGTCATCTACCTTTAAATGATGATTCTACCAAAACATAGCCTCCAGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCATCTACCTTTAAATGATGATTCTACCAAAACATAGCCTCCAGA  946

seq1  ATTC  948
      ||||
seq2  ATTC  950


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