BAC Information

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BAC

Clone NameB6Ng01-198E12
Chromosome8 (Build37)1 (Build37)
Map Location 60,807,471 - 60,808,499144,276,551 - 144,277,053
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneScrg1, Sap30, Hmgb2, LOC547012, Galnt7, LOC100040634, LOC100040711
Downstream gene4930431L04Rik, BC030500, LOC665116, LOC436042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198E12.bB6Ng01-198E12.g
ACCGA019919GA019920
length1,187960
definitionB6Ng01-198E12.b B6Ng01-198E12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(60,807,471 - 60,808,499)(144,276,551 - 144,277,053)
sequence
gaattcctgggcttgggacccagagaaaaggaaggagaagggagatctgc
taggttatgagagtggggagaagagtgatgccaagatgagtgagaagaga
gcctgagaagaatgcaggacagagaggcatggccaccacgtgaaggagac
aggagagggcagccaagagcagccaaggtagaatatagggtttagtaagt
aataactctggattaacttcacggagttaatcaatgacccagctattgtg
ctgattaaggcatataaaaatataaaggcggcatgtgtctttcatgttgg
aacataaaccattgaggcaggtagtgaacccaccaatgctaagatttatt
taaattattcattcaacaataagaagcaagaatgagcctcctgacctctt
cagctcaatgtggatgccctcccctgggagctgcaatgcctctgctgtgg
aggcttcttttcagagctctgtggttcctgagcgtccgggtctcaggatg
atttacactggcacactctccgaccttagagttatgtggctcctgggctc
ccatgcctcaagatgaccttcccttggaacactgccctacatcagagctg
tgtggttccttggtgagtctcagtacaccttcatatctgaaccgaaaggc
aacagctctggttatcagttccaaggctccagtgtgcttgatctgtgatg
catttcatatatcctgtatttcttttgtgcagcattccttgattggcttc
ttgctgactctatccaattgtatggtagcttttttgctgatagtgttggt
ttttctttttaggaaaactgtagaagatgctgtaattcttaataaacttg
cttgcaataaaacataacttgggcaacatctcctgatcccaggtttccta
tcttctttaacttctcatcccctggcttttccttgctagaaccatgccaa
tgaagaacagcctgttgggttcaggtcatattatgctctccattctcaga
cttttatactttttgtttatgatgtgattcctatagcctcatgatcgctt
gaacttgctatatagtttggggctgtcaatgaattccatctgtgtgtctc
ttggggaggcttagtattatgaccatcaccacacacaggcttaccttgta
ttatttcacaatacttccataacactttatttcaagt

gaattctttgtttagctctgagccccatttttaatgggattatttgattt
tttggagtccaccttcttcagtctttatatatattggatattagtcccct
atctgatttaggataggtaaaggtcctttcccaatctgtttttggccttt
ttgtcttattgatggtgtcttttgccttgcagaagctttgcaattttatg
aggttgtatttgtcgtttctcaatcttacagcccaagccattgctgttct
attcaggaatttttcccctgtacccatatcttcaagggttttctctactt
tctcctctataagtttcagtgtctctggttttatgtggagttccttaatc
cacttagatttgaccttagtacaaggagatatgaatggatcaattcacat
tcttctaacatgataaccagcagttgtgccagcaccatttgttgaaaatg
ctgtcttttttccactggatggtttttgctcccttgtcaaagatcaagtg
accatatgtgtgtgggttcatttctgggtcttcaattctattccattggt
ctacttgtctgtctctataccagtaccatggagtttttatcacaattgct
ctgtaatacagctttaagtcaggcatggttattcctccagaggttctttt
atccttgagaagagtttttgctatcctaggttttcttgttattccagatg
aatttgcagattgccctttttaatttgttgagtaattgagttggaatttt
gatgggaattgctttgaatctgtagattgcttttggcaagatagcgattt
ttactatattgatcctaccaatccatgagcatgggagagcttttccatct
tctaagatcttctttatttcccttcttcagagacttgaaagttcttattc
atacagatcttttcactttccttagttagaagtcagggccaagggtattt
tatattattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_60807471_60808499
seq2: B6Ng01-198E12.b_198_1229

seq1  AGGGCAGCCAAGAGCAGCCAAGGTAGAATATAGGGTTTAGTAAGTAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGCCAAGAGCAGCCAAGGTAGAATATAGGGTTTAGTAAGTAATAA  50

seq1  CTCTGGATTAACTTCACGGAGTTAATCAATGACCCAGCTATTGTGCTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGATTAACTTCACGGAGTTAATCAATGACCCAGCTATTGTGCTGAT  100

seq1  TAAGGCATATAAAAATATAAAGGCGGCATGTGTCTTTCATGTTGGAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCATATAAAAATATAAAGGCGGCATGTGTCTTTCATGTTGGAACAT  150

seq1  AAACCATTGAGGCAGGTAGTGAACCCACCAATGCTAAGATTTATTTAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATTGAGGCAGGTAGTGAACCCACCAATGCTAAGATTTATTTAAAT  200

seq1  TATTCATTCAACAATAAGAAGCAAGAATGAGCCTCCTGACCTCTTCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATTCAACAATAAGAAGCAAGAATGAGCCTCCTGACCTCTTCAGCT  250

seq1  CAATGTGGATGCCCTCCCCTGGGAGCTGCAATGCCTCTGCTGTGGAGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGGATGCCCTCCCCTGGGAGCTGCAATGCCTCTGCTGTGGAGGCT  300

seq1  TCTTTTCAGAGCTCTGTGGTTCCTGAGCGTCCGGGTCTCAGGATGATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCAGAGCTCTGTGGTTCCTGAGCGTCCGGGTCTCAGGATGATTTA  350

seq1  CACTGGCACACTCTCCGACCTTAGAGTTATGTGGCTCCTGGGCTCCCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCACACTCTCCGACCTTAGAGTTATGTGGCTCCTGGGCTCCCATG  400

seq1  CCTCAAGATGACCTTCCCTTGGAACACTGCCCTACATCAGAGCTGTGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGATGACCTTCCCTTGGAACACTGCCCTACATCAGAGCTGTGTGG  450

seq1  TTCCTTGGTGAGTCTCAGTACACCTTCATATCTGAACCGAAAGGCAACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGGTGAGTCTCAGTACACCTTCATATCTGAACCGAAAGGCAACAG  500

seq1  CTCTGGTTATCAGTTCCAAGGCTCCAGTGTGCTTGATCTGTGATGCATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTTATCAGTTCCAAGGCTCCAGTGTGCTTGATCTGTGATGCATTT  550

seq1  CATATATCCTGTATTTCTTTTGTGCAGCATTCCTTGATTGGCTTCTTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATCCTGTATTTCTTTTGTGCAGCATTCCTTGATTGGCTTCTTGCT  600

seq1  GACTCTATCCAATTGTATGGTAGCTTTTTTGCTGATAGTGTTGGTTTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTATCCAATTGTATGGTAGCTTTTTTGCTGATAGTGTTGGTTTTTC  650

seq1  TTTTTAGGAAAACTGTAGAAGATGCTGTAATTCTTAATAAACTTGCTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGGAAAACTGTAGAAGATGCTGTAATTCTTAATAAACTTGCTTGC  700

seq1  AATAAAACATAACTTGGGCAACATCTCCTGATCCCAGGTTTCCTATCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACATAACTTGGGCAACATCTCCTGATCCCAGGTTTCCTATCTTC  750

seq1  TTTAACTTCTCATCCCCTGGCTTTTCCTTGCTAGAACCATGCCAATGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTTCTCATCCCCTGGCTTTTCCTTGCTAGAACCATGCCAATGAAG  800

seq1  AACAGCCTGTT-GGTTCAGGTCATATTATGCTCTCCATTCTCAGACTTTT  849
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCTGTTGGGTTCAGGTCATATTATGCTCTCCATTCTCAGACTTTT  850

seq1  ATACTTTTTGTTTATGATGTGATTCCTATAG-CTCATGATCGCTTGAACT  898
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATACTTTTTGTTTATGATGTGATTCCTATAGCCTCATGATCGCTTGAACT  900

seq1  TGCTATATAG-TTGGGGCTGTCATTGAATT-CATCTGTTGTTGTCTCTT-  945
      |||||||||| |||||||||||| |||||| |||||||   |||||||| 
seq2  TGCTATATAGTTTGGGGCTGTCAATGAATTCCATCTGT--GTGTCTCTTG  948

seq1  GGGAG--CTAGTATTAAGGAACACATCACCACACACA-GCT--ACTTGTA  990
      |||||   |||||||| |  || |||||||||||||| |||   ||||||
seq2  GGGAGGCTTAGTATTATG--AC-CATCACCACACACAGGCTTACCTTGTA  995

seq1  TTATTTCAACAATACTTTTCATAACACTTTATTTCAAGT  1029
      ||||||| ||||||| || ||||||||||||||||||||
seq2  TTATTTC-ACAATAC-TTCCATAACACTTTATTTCAAGT  1032


seq1: chr1_144276551_144277053
seq2: B6Ng01-198E12.g_507_1022 (reverse)

seq1  AAATAATATAAAATA-CCTTGG-CGTGAC-TCTAACTAAGGAAA-TG-AA  45
      ||||||||||||||| |||||| | |||| |||||||||||||| || ||
seq2  AAATAATATAAAATACCCTTGGCCCTGACTTCTAACTAAGGAAAGTGAAA  50

seq1  AGATCTGTATG-ATAAGAAC-TTCACGTCTCTGAATAAAGAATTT---TA  90
      ||||||||||| |||||||| |||| ||||||||| || | |  |    |
seq2  AGATCTGTATGAATAAGAACTTTCAAGTCTCTGAAGAAGGGAAATAAAGA  100

seq1  AGATGTCAGAAGATGG-AAAGATCTCCCATGCTCATGGATTGGCAGGATC  139
      |||| | ||||||||| |||| ||||||||||||||||||||| ||||||
seq2  AGATCTTAGAAGATGGAAAAGCTCTCCCATGCTCATGGATTGGTAGGATC  150

seq1  AATATAGTAAAAATGGCTATCTTTCCAAAAGCAATCTACAGATTCAATGC  189
      |||||||||||||| |||||||| ||||||||||||||||||||||| ||
seq2  AATATAGTAAAAATCGCTATCTTGCCAAAAGCAATCTACAGATTCAAAGC  200

seq1  AATCCCCATCAAAATTCCAAATCTATTCTTCAACGAATTAGAAAGGGCAA  239
      ||| |||||||||||||||| || |||  ||||| ||||| |||||||||
seq2  AATTCCCATCAAAATTCCAACTCAATTACTCAACAAATTAAAAAGGGCAA  250

seq1  TCTGCAAATTCACCTGGAATAACAA-AAAACCTAGGATAGCAAAAACTCT  288
      |||||||||||| |||||||||||| ||||||||||||||||||||||||
seq2  TCTGCAAATTCATCTGGAATAACAAGAAAACCTAGGATAGCAAAAACTCT  300

seq1  TCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGC  338
      |||||||||||||||||||||||| ||||| |||||||||||| ||||||
seq2  TCTCAAGGATAAAAGAACCTCTGGAGGAATAACCATGCCTGACTTAAAGC  350

seq1  TGTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGCAAC  388
      |||| |||||||||||||||||||||||| ||||||||||||||||  ||
seq2  TGTATTACAGAGCAATTGTGATAAAAACTCCATGGTACTGGTATAGAGAC  400

seq1  AGACAAGTAGTCCAATGGAATA-AATTGAAGACTCAGAAATGAACCCACA  437
      |||||||||| ||||||||||| |||||||||| ||||||||||||||||
seq2  AGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACA  450

seq1  CACCTATGGTCACTTGATCTTTGACAAGGGAGCAAAAACCATCCAGTGGA  487
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATGGTCACTTGATCTTTGACAAGGGAGCAAAAACCATCCAGTGGA  500

seq1  AATAAGACAGCATTTT  503
      || |||||||||||||
seq2  AAAAAGACAGCATTTT  516


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