BAC Information

Click to search

BAC

Clone NameB6Ng01-199C13
Chromosome8 (Build37)
Map Location 100,925,983 - 101,099,442
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC546090, LOC636859, EG384885, LOC100041173, EG636915
Downstream geneCdh8, A330008L17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199C13.bB6Ng01-199C13.g
ACCGA020565GA020566
length9601,139
definitionB6Ng01-199C13.b B6Ng01-199C13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,098,480 - 101,099,442)(100,925,983 - 100,927,119)
sequence
gaattcagatcattttacaacaaattaagtcatgacagcactttgtaaat
aaagaaagccaaccaaggccagacatgtttagagatgttttcctaagtct
cagtgttagacaattcattacaacaaagtctggtgaatgaaggtttaatt
atcttcagaagaaaattttaatcaagagctccataaaatgtactaatctg
acagccaatgacataagcaattaactatgcagcatagcactgaacatttc
aggtgaaatggttttatcagcaaagaaaaggcaatagtattatttattta
ttctagtcgtcctatgtatccaaagagagcactaggaaagacatcaacta
caaatgagtctgtgctaagtccaatttcacagtgttaaattttagtttgc
cttagaattgttaaaaaggagatgctggaaaggttgataaggcatttact
attatgagtacatcagctaaatttagtcacttaaagaagttcagtatctg
catccttagtgatgaaaccatattagggatgatgctgaagggtagcctcc
caatcaaaataatgataataataataataaataataataagagtaataat
tcagttggtccctgttagggcttcagaaaggatcattgtaagtttctaag
aggcgctctgccactggatttcattgtgtttttctgatttattcctaaag
caacccagatcaacactactcataaatcagagctattgaagtttggtgat
aaaaagctctttataaaattgccataattcctctttagactgataactga
ttagatcatcgtttataaagaaaggcaaggcaaagaaaggaaaggagagg
caaaaagaaaaggaaaggaaaggaaaggaaaggaacggaaaggaaaggaa
aggaaaggaaaggaaaggaaggaaggaaaggaaaggaaaggaaaggaaga
gggagaggga

gaattctcaaatggaataaaaatactgtcattcattagaaacatttcata
caattcaacttatttttaaaatttttgtactctcaaaagtatttatgcca
acactgaaagggaaaaagatgaaagtatgatatacactttgaaataactg
aaaatattatttgaatagtaattttaaagtgaaaataatatagttgttat
ataaaataattgcaaaataccttataatagttttcattttttaaaaaaat
tactacatattaatcatcatgactttacaaaaaaaaaaaggtgagtagga
caaatcagaaggtaaagaaatgttaggcttccaagtcaaatgacctgcgt
ttgacccgcagatactacatggttgaaggtggaggactaatttctgtaag
ctgttctttaacctacatacgtatgtagaaaataaataaatgtaatttaa
aaatgaagtcaaaataaataataggatgcattataaaataaaaatatatt
tagtattccatggacataatatatttgtataaatgaagttatctaaaaaa
atccatgaaaaatcagtgatatttctaatgaaataatcgaaataacattt
tttaacagtctttacatcttctataataagttgctagtaaggtcataatt
actatatgtcgctttattttataaatactaaatgtttatagccatgtttt
ctaagttattcattctaagctagtaatatatttattattatgatttatag
cacatgctcgaatgtacctgccatttttattttatttacttacacatgtg
aaagtagaaatttctgcttgtgtcatgtggtgcatcacgtgaagttttgc
tgacgctgactcatgtgaagttttgctgagccaagacccatgagagttat
gcatgatatctgaagagagtaggagtaggattcaaaaaacagtgactagg
cacttgcatatctatctgtgcaatacatcattgctctcatgtcttcactg
gttcttccacttcattgagaaggcgccaaagagagctcctgggcattctg
ctgtcctggtttactccttgctgactcgtgccaattcgaattcagccaga
gctgcctggtctgctggatctactgcatggtgattcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_101098480_101099442
seq2: B6Ng01-199C13.b_45_1004 (reverse)

seq1  TCCCTCTCCCTCTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTC  50
      ||||||||||||||||||||||||||||||||||||||  | ||||||||
seq2  TCCCTCTCCCTCTTCCTTTCCTTTCCTTTCCTTTCCTT--CCTTCCTTTC  48

seq1  CTTTCCTTTCCTTTCCTTTCCTTTCCGTTCCTTTCCTTTCCTTTCCTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTTCCTTTCCTTTCCTTTCCGTTCCTTTCCTTTCCTTTCCTTTC  98

seq1  CTTTTCTTTTTTGCCTCTCCTTTCCTTTCTTTGCCTTGCCTTTCTTTATA  150
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTC-TTTTTGCCTCTCCTTTCCTTTCTTTGCCTTGCCTTTCTTTATA  147

seq1  AACGATGATCTAATCAGTTATCAGTCTAAAGAGGAATTATGGCAATTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGATGATCTAATCAGTTATCAGTCTAAAGAGGAATTATGGCAATTTTA  197

seq1  TAAAGAGCTTTTTATCACCAAACTTCAATAGCTCTGATTTATGAGTAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGCTTTTTATCACCAAACTTCAATAGCTCTGATTTATGAGTAGTG  247

seq1  TTGATCTGGGTTGCTTTAGGAATAAATCAGAAAAACACAATGAAATCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTGGGTTGCTTTAGGAATAAATCAGAAAAACACAATGAAATCCAG  297

seq1  TGGCAGAGCGCCTCTTAGAAACTTACAATGATCCTTTCTGAAGCCCTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGAGCGCCTCTTAGAAACTTACAATGATCCTTTCTGAAGCCCTAAC  347

seq1  AGGGACCAACTGAATTATTACTCTTATTATTATTTATTATTATTATTATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACCAACTGAATTATTACTCTTATTATTATTTATTATTATTATTATC  397

seq1  ATTATTTTGATTGGGAGGCTACCCTTCAGCATCATCCCTAATATGGTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTGATTGGGAGGCTACCCTTCAGCATCATCCCTAATATGGTTTC  447

seq1  ATCACTAAGGATGCAGATACTGAACTTCTTTAAGTGACTAAATTTAGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTAAGGATGCAGATACTGAACTTCTTTAAGTGACTAAATTTAGCTG  497

seq1  ATGTACTCATAATAGTAAATGCCTTATCAACCTTTCCAGCATCTCCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTCATAATAGTAAATGCCTTATCAACCTTTCCAGCATCTCCTTTT  547

seq1  TAACAATTCTAAGGCAAACTAAAATTTAACACTGTGAAATTGGACTTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATTCTAAGGCAAACTAAAATTTAACACTGTGAAATTGGACTTAGC  597

seq1  ACAGACTCATTTGTAGTTGATGTCTTTCCTAGTGCTCTCTTTGGATACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTCATTTGTAGTTGATGTCTTTCCTAGTGCTCTCTTTGGATACAT  647

seq1  AGGACGACTAGAATAAATAAATAATACTATTGCCTTTTCTTTGCTGATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACGACTAGAATAAATAAATAATACTATTGCCTTTTCTTTGCTGATAA  697

seq1  AACCATTTCACCTGAAATGTTCAGTGCTATGCTGCATAGTTAATTGCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTTCACCTGAAATGTTCAGTGCTATGCTGCATAGTTAATTGCTTA  747

seq1  TGTCATTGGCTGTCAGATTAGTACATTTTATGGAGCTCTTGATTAAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTGGCTGTCAGATTAGTACATTTTATGGAGCTCTTGATTAAAATT  797

seq1  TTCTTCTGAAGATAATTAAACCTTCATTCACCAGACTTTGTTGTAATGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTGAAGATAATTAAACCTTCATTCACCAGACTTTGTTGTAATGAA  847

seq1  TTGTCTAACACTGAGACTTAGGAAAACATCTCTAAACATGTCTGGCCTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTAACACTGAGACTTAGGAAAACATCTCTAAACATGTCTGGCCTTG  897

seq1  GTTGGCTTTCTTTATTTACAAAGTGCTGTCATGACTTAATTTGTTGTAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCTTTCTTTATTTACAAAGTGCTGTCATGACTTAATTTGTTGTAAA  947

seq1  ATGATCTGAATTC  963
      |||||||||||||
seq2  ATGATCTGAATTC  960


seq1: chr8_100925983_100927119
seq2: B6Ng01-199C13.g_61_1199

seq1  GAATTCTCAAATGGAATAAAAATACTGTCATTCATTAGAAACATTTCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAATGGAATAAAAATACTGTCATTCATTAGAAACATTTCATA  50

seq1  CAATTCAACTTATTTTTAAAATTTTTGTACTCTCAAAAGTATTTATGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCAACTTATTTTTAAAATTTTTGTACTCTCAAAAGTATTTATGCCA  100

seq1  ACACTGAAAGGGAAAAAGATGAAAGTATGATATACACTTTGAAATAACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAAAGGGAAAAAGATGAAAGTATGATATACACTTTGAAATAACTG  150

seq1  AAAATATTATTTGAATAGTAATTTTAAAGTGAAAATAATATAGTTGTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTATTTGAATAGTAATTTTAAAGTGAAAATAATATAGTTGTTAT  200

seq1  ATAAAATAATTGCAAAATACCTTATAATAGTTTTCATTTTTTAAAAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAATTGCAAAATACCTTATAATAGTTTTCATTTTTTAAAAAAAT  250

seq1  TACTACATATTAATCATCATGACTTTACAAAAAAAAAAAGGTGAGTAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACATATTAATCATCATGACTTTACAAAAAAAAAAAGGTGAGTAGGA  300

seq1  CAAATCAGAAGGTAAAGAAATGTTAGGCTTCCAAGTCAAATGACCTGCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCAGAAGGTAAAGAAATGTTAGGCTTCCAAGTCAAATGACCTGCGT  350

seq1  TTGACCCGCAGATACTACATGGTTGAAGGTGGAGGACTAATTTCTGTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCCGCAGATACTACATGGTTGAAGGTGGAGGACTAATTTCTGTAAG  400

seq1  CTGTTCTTTAACCTACATACGTATGTAGAAAATAAATAAATGTAATTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTTTAACCTACATACGTATGTAGAAAATAAATAAATGTAATTTAA  450

seq1  AAATGAAGTCAAAATAAATAATAGGATGCATTATAAAATAAAAATATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAGTCAAAATAAATAATAGGATGCATTATAAAATAAAAATATATT  500

seq1  TAGTATTCCATGGACATAATATATTTGTATAAATGAAGTTATCTAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTCCATGGACATAATATATTTGTATAAATGAAGTTATCTAAAAAA  550

seq1  ATCCATGAAAAATCAGTGATATTTCTAATGAAATAATCGAAATAACATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGAAAAATCAGTGATATTTCTAATGAAATAATCGAAATAACATTT  600

seq1  TTTAACAGTCTTTACATCTTCTATAATAAGTTGCTAGTAAGGTCATAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACAGTCTTTACATCTTCTATAATAAGTTGCTAGTAAGGTCATAATT  650

seq1  ACTATATGTCGCTTTATTTTATAAATACTAAATGTTTATAGCCATGTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATGTCGCTTTATTTTATAAATACTAAATGTTTATAGCCATGTTTT  700

seq1  CTAAGTTATTCATTCTAAGCTAGTAATATATTTATTATTATGATTTATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTTATTCATTCTAAGCTAGTAATATATTTATTATTATGATTTATAG  750

seq1  CACATGCTCGAATGTACCTGCCATTTTTATTTTATTTACTTACACATGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCTCGAATGTACCTGCCATTTTTATTTTATTTACTTACACATGTG  800

seq1  -AAGTAGAAATTTCTGCTTGTGTCATGTGGTGCATCACGTGAAGTTTTGC  849
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGAAATTTCTGCTTGTGTCATGTGGTGCATCACGTGAAGTTTTGC  850

seq1  TGACGCTGACTCATGTGAAGTTTTGCTGAGCCAAGACCCATGAGAG-TAT  898
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGACGCTGACTCATGTGAAGTTTTGCTGAGCCAAGACCCATGAGAGTTAT  900

seq1  GCATGATATCTGAAGAGAGTAGGAGTAGGATTCAAAAAACAGTGACTAGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGATATCTGAAGAGAGTAGGAGTAGGATTCAAAAAACAGTGACTAGG  950

seq1  CACTTGCATATCTATCTGTGCAATACATCATTGCTCTCATGTCTTCACTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGCATATCTATCTGTGCAATACATCATTGCTCTCATGTCTTCACTG  1000

seq1  GT--CTCCACTTCATTGAG-AGGCGCCACAGAGAGCTCCT-GGCATTCTG  1044
      ||   |||||||||||||| |||||||| ||||||||||| |||||||||
seq2  GTTCTTCCACTTCATTGAGAAGGCGCCAAAGAGAGCTCCTGGGCATTCTG  1050

seq1  CCTGTTCCTGG-TTACTCC-TGCTGACTCGTGCCAATTCG-ATTCAG-CA  1090
       ||| |||||| ||||||| |||||||||||||||||||| |||||| ||
seq2  -CTG-TCCTGGTTTACTCCTTGCTGACTCGTGCCAATTCGAATTCAGCCA  1098

seq1  GAGGCTTGGCTGTGTCTGCTGGATCATACTGCCATTGGTGATTCATG  1137
      |||   || ||| |||||||||||| ||||||   ||||||||||||
seq2  GAG--CTGCCTG-GTCTGCTGGATC-TACTGC--ATGGTGATTCATG  1139


| Home | SequenceCutter | Blast | Download |