BAC Information

Click to search

BAC

Clone NameB6Ng01-199H05
Chromosome8 (Build37)
Map Location 7,489,182 - 7,647,422
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665127, EG546032
Downstream geneLOC100039836, Efnb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199H05.bB6Ng01-199H05.g
ACCGA020782GA020783
length1,1371,069
definitionB6Ng01-199H05.b B6Ng01-199H05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,489,182 - 7,490,318)(7,646,360 - 7,647,422)
sequence
gaattcatctaggtaactttaaatagcctctttctggttcttaaaatttt
atgctacttcccataggccccattattttcttaacatgcacacacacaca
ataacaggttcagggtagaaaataaaattcaattacaaaaatgatttcat
tcctcttatgttttcatctttaaacacagaactccatcaggtttccttta
acgaaaagaaaacaagctggaattatggcaagggagactgagattagata
acaaagaggacttcctgtgtgcacatatcagtcatctaaaaggtcggtta
agtagtagctctccatgctttatgggaatcagtaagagaggcacaattaa
cttaagaggtttcattcaatgtgtttattttaacaaaattgtatttctgc
attttcactgagggacaaaaaccactaaactagcactttcatggaataat
agttccagatataatctcttttcttctttttcatgttttagataaaatag
aaaaattgaaacaaaacaccaaagttgtatctgtgttccataagggtact
ttgcatatatctatagattgtacatatttataaaatatggagggaactgg
cttctgttcctatgacccacaaatctttggcttctttttctttttcatat
caagatttaaagcatgaacattaagctcttcttaacctgaaactgaatca
gggaaaatggagacctagataaggcctccctcccactccttttgttaatc
tgacaagtgtcacatgttacagttaatatgctattctcttcttatcttcc
aaaattcacatgtctctgaaagtcagaacacagtagaaaacaacctggat
tctatctgtgtctccagagttaagatagtctgtggttcctgccttaaaat
ttcctgggctgggagttaaaaattccacacttaagccatgctgtcactta
gaggagtcccattgtactggtgtatctacaaactattttctgataggtcc
ttgttccatttttctcttttcctgagagctttatcagggctctgatgtac
tgtagccgatagccttttattttacacccatatattcactgctggaactt
cttaatgggggctagagaggtccagtccttcactctt

gaattcaatatgttggcctctccaaatacaccattatttacatggctcat
tcttgggacatggggctctgagggaaaatatagtttcccaccctccttat
attctggtcacatccctaggtgactatttgtacaaactttttctcagtgt
tggtactaatttgctaactaattagaacatatccaaagaagttacttctt
ataatggtttcctatattcaatcactgttattacacatctcttcatcaca
tagaacatgtttaaagtcttcatggttatcttttacatattttatgcaga
ttacttttatatttatggatggggatcacttcttcccccaggtggctgta
aaattgcaatttcactttgacatgatacaaattggtttagagaaaacaaa
taattctaaagtctttagaagctgaaagatgtagttggagcatagtaaaa
acataaataaatctagaagatggtgggttttatctcatcctggatcatgc
ttctgaatttagtttactgatttttatccaggaatgatttggggcttgtg
taaagaaatggaaactaagaaccaccataaaatgagaataagtttgcaat
ctcttaaaatgtgtatttgtacagaccatgaaatacaaatattttgttca
agaaaaatgtcctccagacgttgttctgaatatcagaccaaaagtaaaag
attttaagaaggacgtaaatattcttatttgctttctgttattagctact
ccacaaatatggaatgttggaacattgaaaaaaatctctggatttaagac
catgatcaacaatagtgaaattgtatttgaaagttaaaggtgtatacata
gaaagtataattcaacagttaaataaactttaacatactataaccctgca
actgtcttgccaacaaaaatgagacagtagtatcccagaagatttttttt
ttgcctcactgtaaagctattgcaaattctgtctgtaaaggtgtcaaatc
tcctatcaatacccctgttgttaaatatttattttatagctgtcttattc
aatgtaaaagtttgtgcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_7489182_7490318
seq2: B6Ng01-199H05.b_46_1182

seq1  GAATTCATCTAGGTAACTTTAAATAGCCTCTTTCTGGTTCTTAAAATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTAGGTAACTTTAAATAGCCTCTTTCTGGTTCTTAAAATTTT  50

seq1  ATGCTACTTCCCATAGGCCCCATTATTTTCTTAACATGCACACACACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTACTTCCCATAGGCCCCATTATTTTCTTAACATGCACACACACACA  100

seq1  ATAACAGGTTCAGGGTAGAAAATAAAATTCAATTACAAAAATGATTTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGGTTCAGGGTAGAAAATAAAATTCAATTACAAAAATGATTTCAT  150

seq1  TCCTCTTATGTTTTCATCTTTAAACACAGAACTCCATCAGGTTTCCTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTATGTTTTCATCTTTAAACACAGAACTCCATCAGGTTTCCTTTA  200

seq1  ACGAAAAGAAAACAAGCTGGAATTATGGCAAGGGAGACTGAGATTAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAAAGAAAACAAGCTGGAATTATGGCAAGGGAGACTGAGATTAGATA  250

seq1  ACAAAGAGGACTTCCTGTGTGCACATATCAGTCATCTAAAAGGTCGGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAGGACTTCCTGTGTGCACATATCAGTCATCTAAAAGGTCGGTTA  300

seq1  AGTAGTAGCTCTCCATGCTTTATGGGAATCAGTAAGAGAGGCACAATTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTAGCTCTCCATGCTTTATGGGAATCAGTAAGAGAGGCACAATTAA  350

seq1  CTTAAGAGGTTTCATTCAATGTGTTTATTTTAACAAAATTGTATTTCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGAGGTTTCATTCAATGTGTTTATTTTAACAAAATTGTATTTCTGC  400

seq1  ATTTTCACTGAGGGACAAAAACCACTAAACTAGCACTTTCATGGAATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCACTGAGGGACAAAAACCACTAAACTAGCACTTTCATGGAATAAT  450

seq1  AGTTCCAGATATAATCTCTTTTCTTCTTTTTCATGTTTTAGATAAAATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGATATAATCTCTTTTCTTCTTTTTCATGTTTTAGATAAAATAG  500

seq1  AAAAATTGAAACAAAACACCAAAGTTGTATCTGTGTTCCATAAGGGTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTGAAACAAAACACCAAAGTTGTATCTGTGTTCCATAAGGGTACT  550

seq1  TTGCATATATCTATAGATTGTACATATTTATAAAATATGGAGGGAACTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATATATCTATAGATTGTACATATTTATAAAATATGGAGGGAACTGG  600

seq1  CTTCTGTTCCTATGACCCACAAATCTTTGGCTTCTTTTTCTTTTTCATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTTCCTATGACCCACAAATCTTTGGCTTCTTTTTCTTTTTCATAT  650

seq1  CAAGATTTAAAGCATGAACATTAAGCTCTTCTTAACCTGAAACTGAATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTTAAAGCATGAACATTAAGCTCTTCTTAACCTGAAACTGAATCA  700

seq1  GGGAAAATGGAGACCTAGATAAGGCCTCCCTCCCACTCCTTTTGTTAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAATGGAGACCTAGATAAGGCCTCCCTCCCACTCCTTTTGTTAATC  750

seq1  TGACAAGTGTCACATGTTACAGTTAATATGCTATTCTCTTCTTATCTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGTGTCACATGTTACAGTTAATATGCTATTCTCTTCTTATCTTCC  800

seq1  AAAATTCACATGTCTCTGAAAGTCAGAACACAGTAGAAAAACAACCTGGA  850
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAAATTCACATGTCTCTGAAAGTCAGAACACAGTAG-AAAACAACCTGGA  849

seq1  TTCTATCTGTGTCTCCAGAGTTAAGATAGTCTGTGGTTCCTGCCTTAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCTGTGTCTCCAGAGTTAAGATAGTCTGTGGTTCCTGCCTTAAAA  899

seq1  TTTCCTGGGCTGGGAG-TAAAAATTCCACACTTAAGCCATGCTGTCACTT  949
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTCCTGGGCTGGGAGTTAAAAATTCCACACTTAAGCCATGCTGTCACTT  949

seq1  AGAGGAGTCCCATTGTACTGGTGTATCTACAAACTATTTTCTGAATAGGT  999
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGAGGAGTCCCATTGTACTGGTGTATCTACAAACTATTTTCTG-ATAGGT  998

seq1  CCTTGTTCCA-TTTTCTCTTTTCCTGAGGAAGCTTTATCAGGGCTCTGAT  1048
      |||||||||| |||||||||||||||||  ||||||||||||||||||||
seq2  CCTTGTTCCATTTTTCTCTTTTCCTGAG--AGCTTTATCAGGGCTCTGAT  1046

seq1  GTACTGTAAGCCGATAAGCCTTTATTTAACACCCATATA-TCACTGCT-G  1096
      ||||||| ||||||||  | ||||||| ||||||||||| |||||||| |
seq2  GTACTGT-AGCCGATAGCCTTTTATTTTACACCCATATATTCACTGCTGG  1095

seq1  AAC-TCTAAATGGGGGCTAGAAGAGGCCCAG-CCTTCACTCTT  1137
      ||| ||| |||||||||||| ||||| |||| |||||||||||
seq2  AACTTCTTAATGGGGGCTAG-AGAGGTCCAGTCCTTCACTCTT  1137


seq1: chr8_7646360_7647422
seq2: B6Ng01-199H05.g_63_1131 (reverse)

seq1  ATGCACAAAC-TTTACATTGAATAAGACAGCTAT-AAATAAATATTTAAC  48
      |||||||||| ||||||||||||||||||||||| |||||||||||||||
seq2  ATGCACAAACTTTTACATTGAATAAGACAGCTATAAAATAAATATTTAAC  50

seq1  AACAGGGGTATTGATAGGAGAATTGACACCTATAACAGACAGAA-TTGCA  97
      ||||||||||||||||||||| ||||||||| | |||||||||| |||||
seq2  AACAGGGGTATTGATAGGAGATTTGACACCT-TTACAGACAGAATTTGCA  99

seq1  ATAGCTTTACAGTGAGGC-AAAAAAAAATCTTCTGGGATACTACTGTCTC  146
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATAGCTTTACAGTGAGGCAAAAAAAAAATCTTCTGGGATACTACTGTCTC  149

seq1  ATTTTTGTTGGCAAGACAGTTGCAGGGTTATAGTATGTTAAAGTTTATTT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTTGGCAAGACAGTTGCAGGGTTATAGTATGTTAAAGTTTATTT  199

seq1  AACTGTTGAATTATACTTTCTATGTATACACC-TTAACTTTC-AATACAA  244
      |||||||||||||||||||||||||||||||| ||||||||| |||||||
seq2  AACTGTTGAATTATACTTTCTATGTATACACCTTTAACTTTCAAATACAA  249

seq1  TTTCACTATTGTTGATCATGGTCTTAAATCCAGAGATTTTTTTCAATGTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTATTGTTGATCATGGTCTTAAATCCAGAGATTTTTTTCAATGTT  299

seq1  CCAACATTCCATATTTGTGGAGTAGCTAATAACAG-AAGCAAATAAGAAT  343
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCAACATTCCATATTTGTGGAGTAGCTAATAACAGAAAGCAAATAAGAAT  349

seq1  ATTTACGTCCTTCTTAAAATCTTTTACTTTTGGTCTGATATTCAGAACAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACGTCCTTCTTAAAATCTTTTACTTTTGGTCTGATATTCAGAACAA  399

seq1  CGTCTGGAGGACATTTTTCTTGAACAAAATATTTGTATTTCATGGTCTGT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTGGAGGACATTTTTCTTGAACAAAATATTTGTATTTCATGGTCTGT  449

seq1  ACAAATACACATTTTAAGAGATTGCAAACTTATTCTCATTTTATGGTGGT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATACACATTTTAAGAGATTGCAAACTTATTCTCATTTTATGGTGGT  499

seq1  TCTTAGTTTCCATTTCTTTACACAAGCCCCAAATCATTCCTGGATAAAAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTTTCCATTTCTTTACACAAGCCCCAAATCATTCCTGGATAAAAA  549

seq1  TCAGTAAACTAAATTCAGAAGCATGATCCAGGATGAGATAAAACCCACCA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAAACTAAATTCAGAAGCATGATCCAGGATGAGATAAAACCCACCA  599

seq1  TCTTCTAGATTTATTTATGTTTTTACTATGCTCCAACTACATCTTTCAGC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTAGATTTATTTATGTTTTTACTATGCTCCAACTACATCTTTCAGC  649

seq1  TTCTAAAGACTTTAGAATTATTTGTTTTCTCTAAACCAATTTGTATCATG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAGACTTTAGAATTATTTGTTTTCTCTAAACCAATTTGTATCATG  699

seq1  TCAAAGTGAAATTGCAATTTTACAGCCACCTGGGGGAAGAAGTGATCCCC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTGAAATTGCAATTTTACAGCCACCTGGGGGAAGAAGTGATCCCC  749

seq1  ATCCATAAATATAAAAGTAATCTGCATAAAATATGTAAAAGATAACCATG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATAAATATAAAAGTAATCTGCATAAAATATGTAAAAGATAACCATG  799

seq1  AAGACTTTAAACATGTTCTATGTGATGAAGAGATGTGTAATAACAGTGAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTTAAACATGTTCTATGTGATGAAGAGATGTGTAATAACAGTGAT  849

seq1  TGAATATAGGAAACCATTATAAGAAGTAACTTCTTTGGATATGTTCTAAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATAGGAAACCATTATAAGAAGTAACTTCTTTGGATATGTTCTAAT  899

seq1  TAGTTAGCAAATTAGTACCAACACTGAGAAAAAGTTTGTACAAATAGTCA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAGCAAATTAGTACCAACACTGAGAAAAAGTTTGTACAAATAGTCA  949

seq1  CCTAGGGATGTGACCAGAATATAAGGAGGGTGGGAAACTATATTTTCCCT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGGATGTGACCAGAATATAAGGAGGGTGGGAAACTATATTTTCCCT  999

seq1  CAGAGCCCCATGTCCCAAGAATGAGCCATGTAAATAATGGTGTATTTGGA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCCCATGTCCCAAGAATGAGCCATGTAAATAATGGTGTATTTGGA  1049

seq1  GAGGCCAACATATTGAATTC  1063
      ||||||||||||||||||||
seq2  GAGGCCAACATATTGAATTC  1069


| Home | SequenceCutter | Blast | Download |