BAC Information

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BAC

Clone NameB6Ng01-199J05
Chromosome8 (Build37)
Map Location 101,493,005 - 101,682,379
singlet/doubletdoublet
Overlap geneCdh8
Upstream geneLOC100041173, EG636915
Downstream geneA330008L17Rik, LOC667531, LOC100042069, LOC436054
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199J05.bB6Ng01-199J05.g
ACCGA020873GA020874
length1,0061,138
definitionB6Ng01-199J05.b B6Ng01-199J05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,493,005 - 101,493,741)(101,681,242 - 101,682,379)
sequence
gaattctcctacatcctaaatcatatgaattttctccatattgaaaaata
ttattaacatttattgaatatacaagtgaagtaagaaatacataatttgt
gaaatagtctgaaagaagattcagaaacgccatgcagtttctaagtcact
agactccttaagttagatgatgtactcttcccttttatttgtcatttcat
tgaaaagtgatttaggtttctcacaaaatatatccttatcatagtcacct
actgctggggagaacatccttaagaatagttcttcagtgagactcccttg
aaggaaactaaattttcatttgcaagtggttattaataagatgtttcttc
tgggttagggatgggggcatttgtccatttcttttagctctacaacctca
tctgatccagaccctgcaggcactgcgaatgcttcttcagtctatgagtg
ttcatatctgtgtcaatcatgtcgctttatatggcctggtttccttggta
tcatccaactctgttggaccttactctctttctgcttcttcttccacaga
gatccctgagtcctgatggaagtgattagatagagacatccccttgagca
ctgagtgctccagggtctctcattcttggcataatgtctctgtgcttgtt
cccatctgctaaagaaataataagcttctctgatgatggctgggcaaggc
atggatctctgagtatagcagaatctcattaggagccattttattcttgc
tagaaaaaaaagtgatgttctgttttacttatattcatgaggtatctaga
ctcaggttgtaagtcacacaagaagagtcagacatgggttctgtcttgtg
ggccataagtctgctattggttggttgctcctacaagtctcatggtacca
ttgtatatcttgcaggtgggggtgtcactgtagattaaatggacttggta
ttcctgtcttgttttgaagcatacatagcacctttctgtacaaagacaca
taggaa

gaattctttattctctagggcaacaatgatatactagaatatagggtacc
ttagagtcttcagatgttcatgatcttcaagctaaaatattgttataata
acagaaagacatactttgtcctttatactatccagttagtgacagaagtt
aggaatctccatagttctcatatacatggttcaggttggtaaaattgctg
aatggctaataatgtataaatttgttcattcttgacattttttaaacaaa
accattttaattaccaatgggatgaaaatgaaaatgtataccacaataag
aaaatcatttatggataaatgctttagcattcttcaattattttatgtgg
gcaaaagggtctcaaaaaacaaagttttgagaactgctaccttaggaagg
catttattaactaaagtcatttgaggtaattagtttgaaatattgttgca
aagcacatttccacactttaaaaaagtgtcacttttaaaatgtgggtttt
atattgatagaagtgcatgtgtccttaatatgattttgggtatagagtat
ggacagggtttgtatatgaaagatcctcctcagaattaggtattaaatgc
ttgactttcaactggtggacctatttagggcattctggaaatattagaac
gtatgaaccattaagattcaagtcttagaatattagacagggttctagat
tccttcccttctcattgttgcttgtcctctttaatgtggatggctttctc
ctccacagagtcctgttggtattatgttttgctggacattcggcaaacat
gagcccaaatgaatccaccctccttcaagtcgtttttgtcagatacttgt
taggaaggaagagtaattaaaattaattatataatacattttcaatatta
tctggccatcaacacttatgggtgaatattaggcaactttaaaaaggaca
tatttggcattttaattttaccattttatgttgtgacaaaaaatggtggc
tttcatacacatcaaatatttttcggtccagatagagaacagccacttct
gctaaatccatttcactatgtattttattaaaatattatgaacatcataa
atcactgcccaattcgttcttcctacagcacctcccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_101493005_101493741
seq2: B6Ng01-199J05.b_45_781

seq1  GAATTCTCCTACATCCTAAATCATATGAATTTTCTCCATATTGAAAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTACATCCTAAATCATATGAATTTTCTCCATATTGAAAAATA  50

seq1  TTATTAACATTTATTGAATATACAAGTGAAGTAAGAAATACATAATTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAACATTTATTGAATATACAAGTGAAGTAAGAAATACATAATTTGT  100

seq1  GAAATAGTCTGAAAGAAGATTCAGAAACGCCATGCAGTTTCTAAGTCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGTCTGAAAGAAGATTCAGAAACGCCATGCAGTTTCTAAGTCACT  150

seq1  AGACTCCTTAAGTTAGATGATGTACTCTTCCCTTTTATTTGTCATTTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCCTTAAGTTAGATGATGTACTCTTCCCTTTTATTTGTCATTTCAT  200

seq1  TGAAAAGTGATTTAGGTTTCTCACAAAATATATCCTTATCATAGTCACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGTGATTTAGGTTTCTCACAAAATATATCCTTATCATAGTCACCT  250

seq1  ACTGCTGGGGAGAACATCCTTAAGAATAGTTCTTCAGTGAGACTCCCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGGGGAGAACATCCTTAAGAATAGTTCTTCAGTGAGACTCCCTTG  300

seq1  AAGGAAACTAAATTTTCATTTGCAAGTGGTTATTAATAAGATGTTTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAACTAAATTTTCATTTGCAAGTGGTTATTAATAAGATGTTTCTTC  350

seq1  TGGGTTAGGGATGGGGGCATTTGTCCATTTCTTTTAGCTCTACAACCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTAGGGATGGGGGCATTTGTCCATTTCTTTTAGCTCTACAACCTCA  400

seq1  TCTGATCCAGACCCTGCAGGCACTGCGAATGCTTCTTCAGTCTATGAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCCAGACCCTGCAGGCACTGCGAATGCTTCTTCAGTCTATGAGTG  450

seq1  TTCATATCTGTGTCAATCATGTCGCTTTATATGGCCTGGTTTCCTTGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATCTGTGTCAATCATGTCGCTTTATATGGCCTGGTTTCCTTGGTA  500

seq1  TCATCCAACTCTGTTGGACCTTACTCTCTTTCTGCTTCTTCTTCCACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCAACTCTGTTGGACCTTACTCTCTTTCTGCTTCTTCTTCCACAGA  550

seq1  GATCCCTGAGTCCTGATGGAAGTGATTAGATAGAGACATCCCCTTGAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCTGAGTCCTGATGGAAGTGATTAGATAGAGACATCCCCTTGAGCA  600

seq1  CTGAGTGCTCCAGGGTCTCTCATTCTTGGCATAATGTCTCTGTGCTTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGCTCCAGGGTCTCTCATTCTTGGCATAATGTCTCTGTGCTTGTT  650

seq1  CCCATCTGCTAAAGAAATAATAAGCTTCTCTGATGATGGCTGGGCAAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTGCTAAAGAAATAATAAGCTTCTCTGATGATGGCTGGGCAAGGC  700

seq1  ATGGATCTCTGAGTATAGCAGAATCTCATTAGGAGCC  737
      |||||||||||||||||||||||||||||||||||||
seq2  ATGGATCTCTGAGTATAGCAGAATCTCATTAGGAGCC  737


seq1: chr8_101681242_101682379
seq2: B6Ng01-199J05.g_64_1201 (reverse)

seq1  ATGGGAGGTGCTGTAGGGAAGAAAGGGGATGGGGAAGTGATTTAATGATG  50
      ||||||||||||||| |||||||   | || ||| |||||||| ||||||
seq2  ATGGGAGGTGCTGTA-GGAAGAA--CGAATTGGGCAGTGATTT-ATGATG  46

seq1  -TCATAATATTTTAATTAAAATACATATTTAAATGGGATTTAGCAAGAGT  99
       |||||||||||||| ||||||||||| | |||| ||||||||||  |||
seq2  TTCATAATATTTTAA-TAAAATACATAGTGAAAT-GGATTTAGCAGAAGT  94

seq1  GGGCTTGTCTCTATCTGGACCGAAAATAATTTTGATGTGTATGAAGGCCA  149
       ||||  ||||||||||||||||||| |  ||||||||||||||| ||||
seq2  -GGCTGTTCTCTATCTGGACCGAAAA-ATATTTGATGTGTATGAAAGCCA  142

seq1  CCA-TTTTTGTCACAACATAAAATGGT-AAATTAAAATGCC-AATATGT-  195
      ||| ||||||||||||||||||||||| ||||||||||||| ||||||| 
seq2  CCATTTTTTGTCACAACATAAAATGGTAAAATTAAAATGCCAAATATGTC  192

seq1  CTTTTTAAAGTTGCCTAATATTCA-CCAT-AGTGTTGATGGCCAGATAAT  243
      |||||||||||||||||||||||| |||| ||||||||||||||||||||
seq2  CTTTTTAAAGTTGCCTAATATTCACCCATAAGTGTTGATGGCCAGATAAT  242

seq1  ATTGAAAATGTATTATATAATT-ATTTTAATTACTCTTCCTTCCTAACAA  292
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATTGAAAATGTATTATATAATTAATTTTAATTACTCTTCCTTCCTAACAA  292

seq1  GTATCTGACAAAAACGACTTGAAGGAGGGTGGATTCATTTGGGCTCATGT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTGACAAAAACGACTTGAAGGAGGGTGGATTCATTTGGGCTCATGT  342

seq1  TTGCCGAATGTCCAGCAAAACATAATACCAACAGGACTCTGTGGAGGAGA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCGAATGTCCAGCAAAACATAATACCAACAGGACTCTGTGGAGGAGA  392

seq1  AAGCCATCCACATTAAAGAGGACAAGCAACAATGAGAAGGGAAGGAATCT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATCCACATTAAAGAGGACAAGCAACAATGAGAAGGGAAGGAATCT  442

seq1  AGAACCCTGTCTAATATTCTAAGACTTGAATCTTAATGGTTCATACGTTC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCTGTCTAATATTCTAAGACTTGAATCTTAATGGTTCATACGTTC  492

seq1  TAATATTTCCAGAATGCCCTAAATAGGTCCACCAGTTGAAAGTCAAGCAT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTCCAGAATGCCCTAAATAGGTCCACCAGTTGAAAGTCAAGCAT  542

seq1  TTAATACCTAATTCTGAGGAGGATCTTTCATATACAAACCCTGTCCATAC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACCTAATTCTGAGGAGGATCTTTCATATACAAACCCTGTCCATAC  592

seq1  TCTATACCCAAAATCATATTAAGGACACATGCACTTCTATCAATATAAAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATACCCAAAATCATATTAAGGACACATGCACTTCTATCAATATAAAA  642

seq1  CCCACATTTTAAAAGTGACACTTTTTTAAAGTGTGGAAATGTGCTTTGCA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATTTTAAAAGTGACACTTTTTTAAAGTGTGGAAATGTGCTTTGCA  692

seq1  ACAATATTTCAAACTAATTACCTCAAATGACTTTAGTTAATAAATGCCTT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATTTCAAACTAATTACCTCAAATGACTTTAGTTAATAAATGCCTT  742

seq1  CCTAAGGTAGCAGTTCTCAAAACTTTGTTTTTTGAGACCCTTTTGCCCAC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGGTAGCAGTTCTCAAAACTTTGTTTTTTGAGACCCTTTTGCCCAC  792

seq1  ATAAAATAATTGAAGAATGCTAAAGCATTTATCCATAAATGATTTTCTTA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAATTGAAGAATGCTAAAGCATTTATCCATAAATGATTTTCTTA  842

seq1  TTGTGGTATACATTTTCATTTTCATCCCATTGGTAATTAAAATGGTTTTG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTATACATTTTCATTTTCATCCCATTGGTAATTAAAATGGTTTTG  892

seq1  TTTAAAAAATGTCAAGAATGAACAAATTTATACATTATTAGCCATTCAGC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAATGTCAAGAATGAACAAATTTATACATTATTAGCCATTCAGC  942

seq1  AATTTTACCAACCTGAACCATGTATATGAGAACTATGGAGATTCCTAACT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTACCAACCTGAACCATGTATATGAGAACTATGGAGATTCCTAACT  992

seq1  TCTGTCACTAACTGGATAGTATAAAGGACAAAGTATGTCTTTCTGTTATT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCACTAACTGGATAGTATAAAGGACAAAGTATGTCTTTCTGTTATT  1042

seq1  ATAACAATATTTTAGCTTGAAGATCATGAACATCTGAAGACTCTAAGGTA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAATATTTTAGCTTGAAGATCATGAACATCTGAAGACTCTAAGGTA  1092

seq1  CCCTATATTCTAGTATATCATTGTTGCCCTAGAGAATAAAGAATTC  1138
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATATTCTAGTATATCATTGTTGCCCTAGAGAATAAAGAATTC  1138


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