BAC Information

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BAC

Clone NameB6Ng01-199M01
Chromosome8 (Build37)
Map Location 87,888,661 - 88,074,864
singlet/doubletdoublet
Overlap geneD830007F02Rik, 4921524J17Rik, Gpt2, Dnaja2
Upstream geneCacna1a, Ier2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l
Downstream geneNeto2, Itfg1, LOC100040798, Phkb, LOC671665, LOC100040165, Abcc12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199M01.bB6Ng01-199M01.g
ACCGA021003GA021004
length1,126724
definitionB6Ng01-199M01.b B6Ng01-199M01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,888,661 - 87,889,786)(88,074,141 - 88,074,864)
sequence
gaattctggaatgtggaccctaccaaagtaatagccctgtccacagccac
caccatcttgaagagggcttcgagcctggcaccatgctgggcaccctcct
gccgcacagccctcaccagctccaggacctcaggccatgcggcctgagcc
gtggttgggggagtgctgccagaccctgccagactcaactcccgggaggc
ctccagccgatgcagatcttgttccaggtgatccatgccttggcacacac
actgcagcttctctgtgacatcttcttggaaatgcaagagtctgtcgacc
ttctcagtcagcacattaagttttttgtccatggtggctaagcaggctcc
gcccaatgctggcagaccctggggggccagaccctctgggtcctcctctg
aaactcctgacatcccatttcgggtttgctaaggacaaaggcaaggaacc
tgcagcaccacggatctgcggatctgcctttcactttggtgctaacatct
ggaaggccattgtcctccgctggtaagagccttgctgcagagcctcagcc
tgccctcctgactgagctgtttgggggaacggagagggccaagttctctg
tgtttctgccttgtctatctcgcactcagccactgagagagtgacaggct
gagtttggcccaggcccttctcctggggcctctttgacatcatggtaaca
attaacattcctctttaagaggctgctgactgcagatattttaagagtct
gcccagagaaggctggggctcatatagttcttgctaaagaatggaagaaa
aatgtcttttaacatgcaaacagggaaggggaatccatgagacccaaccc
ttaaacaaagaactggagacaaccaaaggaaagctgagaattagtcttcc
ccagggatgagccctaattggttatcccataccaagtggtcggccctgaa
ataatatgcatacaactaacgctaaataaaccagtaaattgtatttaaag
atttatggtgtttttatacatatatatacaataaagaaaacgaattgaga
aggaactgaagagggattggatggaggaaaaaagaaaaggaaattatatt
aattgccatttaattgaaagaaaaat
gaattcaagggttttaaattagtaaggaaggcttaaaggctgcacgtgta
tagatcagtgacagagcccacttagcatgtgtgaaacctggaaaaaggtg
tgggggctcgaacctttaatcatatcacttgggacaaagggacagagaca
agcagatctcttgaatttgaggccagcctgctccttacataaagccagag
ctacttaatttatactaagtaaaaacaaagcaacaaccaaccaaccaaac
caatcaaaaaacaaatgtgtattattaaatctgtgatataaatggatagt
attgttgaataattcttagaattttattcttttacagtttgatacgcaca
gaaatataaaatgtagtttggcaacgatcttcatattacctttttctatg
cttccccttcaaactaacccctctttctaacaagtccctcctattttttg
cctttcctcccttggccctttatacttaattatagtttcctgaatgaata
gggatggtagagttatttacctgagcaagggcaacttaccattggctaca
tcactgagaatgaatcccttctctcagcaaccattaactacagctcctta
gggagggatggggctactttgttttttgagattagtttggaagttggtct
tgtaattgaagtatgctatatatgaataaaattgagttgtgttttattag
ctgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_87888661_87889786
seq2: B6Ng01-199M01.b_44_1169

seq1  GAATTCTGGAATGTGGACCCTACCAAAGTAATAGCCCTGTCCACAGCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGAATGTGGACCCTACCAAAGTAATAGCCCTGTCCACAGCCAC  50

seq1  CACCATCTTGAAGAGGGCTTCGAGCCTGGCACCATGCTGGGCACCCTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCTTGAAGAGGGCTTCGAGCCTGGCACCATGCTGGGCACCCTCCT  100

seq1  GCCGCACAGCCCTCACCAGCTCCAGGACCTCAGGCCATGCGGCCTGAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCACAGCCCTCACCAGCTCCAGGACCTCAGGCCATGCGGCCTGAGCC  150

seq1  GTGGTTGGGGGAGTGCTGCCAGACCCTGCCAGACTCAACTCCCGGGAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGGGGGAGTGCTGCCAGACCCTGCCAGACTCAACTCCCGGGAGGC  200

seq1  CTCCAGCCGATGCAGATCTTGTTCCAGGTGATCCATGCCTTGGCACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCCGATGCAGATCTTGTTCCAGGTGATCCATGCCTTGGCACACAC  250

seq1  ACTGCAGCTTCTCTGTGACATCTTCTTGGAAATGCAAGAGTCTGTCGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGCTTCTCTGTGACATCTTCTTGGAAATGCAAGAGTCTGTCGACC  300

seq1  TTCTCAGTCAGCACATTAAGTTTTTTGTCCATGGTGGCTAAGCAGGCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGTCAGCACATTAAGTTTTTTGTCCATGGTGGCTAAGCAGGCTCC  350

seq1  GCCCAATGCTGGCAGACCCTGGGGGGCCAGACCCTCTGGGTCCTCCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAATGCTGGCAGACCCTGGGGGGCCAGACCCTCTGGGTCCTCCTCTG  400

seq1  AAACTCCTGACATCCCAATTCGGGTTTGCTAAGGACAAAGGCAAGGAACC  450
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAACTCCTGACATCCCATTTCGGGTTTGCTAAGGACAAAGGCAAGGAACC  450

seq1  TGCAGCACCACGGATCTGCGGATCTGCCTTTCACTTTGGTGCTAACATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCACCACGGATCTGCGGATCTGCCTTTCACTTTGGTGCTAACATCT  500

seq1  GGAAGGCCATTGTCCTCCGCTGGTAAGAGCCTTGCTGCAGAGCCTCAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCCATTGTCCTCCGCTGGTAAGAGCCTTGCTGCAGAGCCTCAGCC  550

seq1  TGCCCTCCTGACTGAGCTGTTTGGGGGAACGGAGAGGGCCAAGTTCTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCCTGACTGAGCTGTTTGGGGGAACGGAGAGGGCCAAGTTCTCTG  600

seq1  TGTTTCTGCCTTGTCTATCTCGCACTCAGCCACTGAGAGAGTGACAGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTGCCTTGTCTATCTCGCACTCAGCCACTGAGAGAGTGACAGGCT  650

seq1  GAGTTTGGCCCAGGCCCTTCTCCTGGGGCCTCTTTGACATCATGGTAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGGCCCAGGCCCTTCTCCTGGGGCCTCTTTGACATCATGGTAACA  700

seq1  ATTAACATTCCTCTTTAAGAGGCTGCTGACTGCAGATATTTTAAGAGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACATTCCTCTTTAAGAGGCTGCTGACTGCAGATATTTTAAGAGTCT  750

seq1  GCCCAGAGAAGGCTGGGGCTCATATAGTTCTTGCTAAAGAATGGAAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGAGAAGGCTGGGGCTCATATAGTTCTTGCTAAAGAATGGAAGAAA  800

seq1  AATGTCTTTTAACATGCAAACAGGGAAGGGGAATCCATGAGACCCAACCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTTTTAACATGCAAACAGGGAAGGGGAATCCATGAGACCCAACCC  850

seq1  TTAAACAAAGAACTGGAGACAACC-AAGGAAAGCTGAGAATTAGTCTTCC  899
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTAAACAAAGAACTGGAGACAACCAAAGGAAAGCTGAGAATTAGTCTTCC  900

seq1  CCAGGGATGAGCCCTAATTGGTTATCCCATACCAAGTGGTCGGCCCTGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGATGAGCCCTAATTGGTTATCCCATACCAAGTGGTCGGCCCTGAA  950

seq1  ATAATATGCATACAACTAACGCTAAATAAACCAGTAAATTGTATTTATAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATAATATGCATACAACTAACGCTAAATAAACCAGTAAATTGTATTTAAAG  1000

seq1  ATTTAT-GTGTTTTTATACATATAATAATAACAATAAAGAAAACGAATTT  1048
      |||||| |||||||||||||||| |||   ||||||||||||||||| ||
seq2  ATTTATGGTGTTTTTATACATAT-ATA--TACAATAAAGAAAACGAA-TT  1046

seq1  GAG-AGGAACTG-AGAGGGATTGGATGGAGGAAAAAGAAAAGGGAAATTA  1096
      ||| |||||||| |||||||||||||||||||||||  ||| ||||||||
seq2  GAGAAGGAACTGAAGAGGGATTGGATGGAGGAAAAAAGAAAAGGAAATTA  1096

seq1  TA-TAATTGCAATTTAATTTAAAAGAAAAAT  1126
      || ||||||| |||||| || ||||||||||
seq2  TATTAATTGCCATTTAA-TTGAAAGAAAAAT  1126

seq1: chr8_88074141_88074864
seq2: B6Ng01-199M01.g_67_790 (reverse)

seq1  ACACACACACACACACACACACAGCTAATAAAACACAACTCAATTTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACAGCTAATAAAACACAACTCAATTTTATT  50

seq1  CATATATAGCATACTTCAATTACAAGACCAACTTCCAAACTAATCTCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATAGCATACTTCAATTACAAGACCAACTTCCAAACTAATCTCAAA  100

seq1  AAACAAAGTAGCCCCATCCCTCCCTAAGGAGCTGTAGTTAATGGTTGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGTAGCCCCATCCCTCCCTAAGGAGCTGTAGTTAATGGTTGCTG  150

seq1  AGAGAAGGGATTCATTCTCAGTGATGTAGCCAATGGTAAGTTGCCCTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGGGATTCATTCTCAGTGATGTAGCCAATGGTAAGTTGCCCTTGC  200

seq1  TCAGGTAAATAACTCTACCATCCCTATTCATTCAGGAAACTATAATTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTAAATAACTCTACCATCCCTATTCATTCAGGAAACTATAATTAAG  250

seq1  TATAAAGGGCCAAGGGAGGAAAGGCAAAAAATAGGAGGGACTTGTTAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGGGCCAAGGGAGGAAAGGCAAAAAATAGGAGGGACTTGTTAGAA  300

seq1  AGAGGGGTTAGTTTGAAGGGGAAGCATAGAAAAAGGTAATATGAAGATCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGTTAGTTTGAAGGGGAAGCATAGAAAAAGGTAATATGAAGATCG  350

seq1  TTGCCAAACTACATTTTATATTTCTGTGCGTATCAAACTGTAAAAGAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAAACTACATTTTATATTTCTGTGCGTATCAAACTGTAAAAGAATA  400

seq1  AAATTCTAAGAATTATTCAACAATACTATCCATTTATATCACAGATTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTAAGAATTATTCAACAATACTATCCATTTATATCACAGATTTAA  450

seq1  TAATACACATTTGTTTTTTGATTGGTTTGGTTGGTTGGTTGTTGCTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACACATTTGTTTTTTGATTGGTTTGGTTGGTTGGTTGTTGCTTTGT  500

seq1  TTTTACTTAGTATAAATTAAGTAGCTCTGGCTTTATGTAAGGAGCAGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTAGTATAAATTAAGTAGCTCTGGCTTTATGTAAGGAGCAGGCT  550

seq1  GGCCTCAAATTCAAGAGATCTGCTTGTCTCTGTCCCTTTGTCCCAAGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCAAATTCAAGAGATCTGCTTGTCTCTGTCCCTTTGTCCCAAGTGA  600

seq1  TATGATTAAAGGTTCGAGCCCCCACACCTTTTTCCAGGTTTCACACATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTAAAGGTTCGAGCCCCCACACCTTTTTCCAGGTTTCACACATGC  650

seq1  TAAGTGGGCTCTGTCACTGATCTATACACGTGCAGCCTTTAAGCCTTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGGGCTCTGTCACTGATCTATACACGTGCAGCCTTTAAGCCTTCCT  700

seq1  TACTAATTTAAAACCCTTGAATTC  724
      ||||||||||||||||||||||||
seq2  TACTAATTTAAAACCCTTGAATTC  724