BAC Information

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BAC

Clone NameB6Ng01-200N15
Chromosome8 (Build37)
Map Location 107,155,828 - 107,290,076
singlet/doubletdoublet
Overlap gene1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050
Upstream geneLOC100041397, LOC667656, Cdh5, Bean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad
Downstream gene4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200N15.bB6Ng01-200N15.g
ACCGA021797GA021798
length552942
definitionB6Ng01-200N15.b B6Ng01-200N15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,155,828 - 107,156,385)(107,289,531 - 107,290,076)
sequence
ttggggtcccttaggaggttcagggggtgatagagcctgctgggtgcttg
tctgctggagagaaactacagggccagaaaaaggaacacacaaactcaaa
tcccaactctaactctaagcatgcggaacagctgccagtaactgctaaaa
atatctaaccctggccctagccactttgtttttgggcatgaggttgccca
gagttggggagatccggcctaacagtgggggactccagaaagagccaacc
cctttatagtcttcaagttcttcctgctcctgagccccacactgggcctt
ttgcttgtaaacatctcaccgaggaggggcataaatgtagggtatggggg
aggggtagctttcaggaactggtcgcagggcctctgctctgtttaagact
cacttttgatccatccccgtgtgccagactcttttattaatggcaaaaat
atacccagtaccaccactgcttcagagctcccctttctcagacactggtt
tgaaaacagggatagtatctgagggaaggagaggtgattgggtggactgg
gt
gaattcctagaaaacagtcaggtaaattcagagtgagctatctgagagcc
tttagctaaaggcctggctggaataaagattaataagtctctttgtcttt
atttaaccactggcgaatgactccagaaagtcttgctatgttattccaag
taatcagcctttttatacatgtgtcaaaactgaatatacatgtatcaaag
ctaaatatgattcccatgttgtaatggtaggtgcaagctagacatggatt
gcaagactaatgttaagtcagattctaccaagctctgctccccagagaga
cacgcaggtgactgtatgcctcgttgtctgaggaagtgcctcagtttctc
aggaactgaaaggcacacaaaatataccaggagtttcagggagatgtgca
tgaggacatgcaagccaggggaagggggaatcagtactactccagctgat
ctcaggacaaaatttctggggttcagatatagtacctcaaccccactcat
atttggggccagatccctaggtcccatggctccctgactccacatctccc
cactttcattttatgaaggggacgtatcattatagtcatcagcctctggg
ttgggaatagtttggtattaaaccagaacctagttgttagtgactttggc
aatgttgctgagttgctgttttagaaattggatgaaacaggaatcaaaga
ggaggaaggccccagtggccagtacagggccaaggaaggtaggaagacaa
gctaccagagggcttgagtaccatggtgtggaggtacttggattataaca
agttcagagatgtggcagaagatccttaaatacatgtatgctttgttgaa
ctagcccagactcattaacatagaaacagcatttcttcccttggacaact
ctgctcaactgtcagaagggctggaagctctcctgtttgtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_107155828_107156385
seq2: B6Ng01-200N15.b_45_602

seq1  GAATTCTTGGGGTCCCTTAGGAGGTTCAGGGGGTGATAGAGCCTGCTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGGGTCCCTTAGGAGGTTCAGGGGGTGATAGAGCCTGCTGGG  50

seq1  TGCTTGTCTGCTGGAGAGAAACTACAGGGCCAGAAAAAGGAACACACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTCTGCTGGAGAGAAACTACAGGGCCAGAAAAAGGAACACACAAA  100

seq1  CTCAAATCCCAACTCTAACTCTAAGCATGCGGAACAGCTGCCAGTAACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATCCCAACTCTAACTCTAAGCATGCGGAACAGCTGCCAGTAACTG  150

seq1  CTAAAAATATCTAACCCTGGCCCTAGCCACTTTGTTTTTGGGCATGAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAATATCTAACCCTGGCCCTAGCCACTTTGTTTTTGGGCATGAGGT  200

seq1  TGCCCAGAGTTGGGGAGATCCGGCCTAACAGTGGGGGACTCCAGAAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGAGTTGGGGAGATCCGGCCTAACAGTGGGGGACTCCAGAAAGAG  250

seq1  CCAACCCCTTTATAGTCTTCAAGTTCTTCCTGCTCCTGAGCCCCACACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCCCTTTATAGTCTTCAAGTTCTTCCTGCTCCTGAGCCCCACACTG  300

seq1  GGCCTTTTGCTTGTAAACATCTCACCGAGGAGGGGCATAAATGTAGGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTTGCTTGTAAACATCTCACCGAGGAGGGGCATAAATGTAGGGTA  350

seq1  TGGGGGAGGGGTAGCTTTCAGGAACTGGTCGCAGGGCCTCTGCTCTGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAGGGGTAGCTTTCAGGAACTGGTCGCAGGGCCTCTGCTCTGTTT  400

seq1  AAGACTCACTTTTGATCCATCCCCGTGTGCCAGACTCTTTTATAAATGGC  450
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAGACTCACTTTTGATCCATCCCCGTGTGCCAGACTCTTTTATTAATGGC  450

seq1  AAAAATATACCCAGTACCACCACTGCTTCAGAGCTCCCCTTTCTCAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATACCCAGTACCACCACTGCTTCAGAGCTCCCCTTTCTCAGACA  500

seq1  CTGGTTTGAAAACAGGGATAGTATCTGAGGGAAGGAGAGGTGATTGGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTGAAAACAGGGATAGTATCTGAGGGAAGGAGAGGTGATTGGGTG  550

seq1  GACTGGGT  558
      ||||||||
seq2  GACTGGGT  558

seq1: chr8_107289531_107290076
seq2: B6Ng01-200N15.g_67_612 (reverse)

seq1  GATGTGGAGTCAGGGAGCCATGGGACCTAGGGATCTGGCCCCAAATATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGAGTCAGGGAGCCATGGGACCTAGGGATCTGGCCCCAAATATGA  50

seq1  GTGGGGTTGAGGTACTATATCTGAACCCCAGAAATTTTGTCCTGAGATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGTTGAGGTACTATATCTGAACCCCAGAAATTTTGTCCTGAGATCA  100

seq1  GCTGGAGTAGTACTGATTCCCCCTTCCCCTGGCTTGCATGTCCTCATGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGTAGTACTGATTCCCCCTTCCCCTGGCTTGCATGTCCTCATGCA  150

seq1  CATCTCCCTGAAACTCCTGGTATATTTTGTGTGCCTTTCAGTTCCTGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCCTGAAACTCCTGGTATATTTTGTGTGCCTTTCAGTTCCTGAGA  200

seq1  AACTGAGGCACTTCCTCAGACAACGAGGCATACAGTCACCTGCGTGTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGGCACTTCCTCAGACAACGAGGCATACAGTCACCTGCGTGTCTC  250

seq1  TCTGGGGAGCAGAGCTTGGTAGAATCTGACTTAACATTAGTCTTGCAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGAGCAGAGCTTGGTAGAATCTGACTTAACATTAGTCTTGCAATC  300

seq1  CATGTCTAGCTTGCACCTACCATTACAACATGGGAATCATATTTAGCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTAGCTTGCACCTACCATTACAACATGGGAATCATATTTAGCTTT  350

seq1  GATACATGTATATTCAGTTTTGACACATGTATAAAAAGGCTGATTACTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACATGTATATTCAGTTTTGACACATGTATAAAAAGGCTGATTACTTG  400

seq1  GAATAACATAGCAAGACTTTCTGGAGTCATTCGCCAGTGGTTAAATAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAACATAGCAAGACTTTCTGGAGTCATTCGCCAGTGGTTAAATAAAG  450

seq1  ACAAAGAGACTTATTAATCTTTATTCCAGCCAGGCCTTTAGCTAAAGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAGACTTATTAATCTTTATTCCAGCCAGGCCTTTAGCTAAAGGCT  500

seq1  CTCAGATAGCTCACTCTGAATTTACCTGACTGTTTTCTAGGAATTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATAGCTCACTCTGAATTTACCTGACTGTTTTCTAGGAATTC  546