BAC Information

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BAC

Clone NameB6Ng01-201F02
Chromosome8 (Build37)
Map Location 50,499,516 - 50,646,882
singlet/doubletdoublet
Overlap genenone
Upstream geneOdz3, 2900073C17Rik, LOC100039866, 4930555F03Rik
Downstream geneLOC100039919, EG667495, LOC100039954
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201F02.bB6Ng01-201F02.g
ACCGA022127GA022128
length4751,143
definitionB6Ng01-201F02.b B6Ng01-201F02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,646,402 - 50,646,882)(50,499,516 - 50,500,658)
sequence
taaaattctaaaagaaaaacaaacaaaacaaaacaaaacaaaacaaaaca
aaagacagttctacactaaggactaaggagaatgttgtgagacaagtgag
acgcaggcagagctaggacaaggcgtcagggagcatgctccaattacgat
aacttgtcattcctatgaaaatataatgtgctttctctttatctctgtgt
aagcatcttacataaataactcattgtgaggctacagtggaattggttgc
tttggtgaccatggtgctaacatgctcacaggcaagcattggaaggaagg
aaagaagggaagaaacatgaaggagagaaaaaagagggaaggaaggatgg
gagggagaacaaaagggagagaggaaggggagataagggtgaaaggacaa
aaggaatgaaagagaagcaaggaaggaaggaaggaaggaaggaaggaagg
aaggaaggaaggaaggaagggtgtt

gaattcacatgcttgtagggtaagggcatctgctatttattatgcatagc
ttgcagtagaacatgggctttgtatcagatcctagttcaaatcccaccac
cagttgttatttcttttgtctatgtgttatggatcaattctgtgctctgt
acctgtgaagttggaataattacaagggaaacaaataaacactggggtgt
atgttagtaacatagagagctcatgccttcattatgctctccttaaatat
atattttggccaagtggtggtggcccatacctttaacgccagcacttggg
aggcagagacaaaaagatctccaggttcaaggacagcctggtctagagag
tgagttccaagacagtcaacaagaaacaaacaaacaaacaaacaaaaaac
cacaacaaaaccacaataaaacaaaaggtacacaaccatttagtcatatt
ataaatacaaggagagtggaagaggagggggcacacgcatttataattct
cctgtcttagtttcttttccggatgtaactggcagacacctctgccttgg
atgtatatatatttaaaagatatatcctttacacctcccatgttctgtaa
atacatatcaactcatcagtttttctgtgaagtttcataatactgaatga
tgaaagaggcagaactgtctaccaacaatcttaatattaaaacaatactt
agtgttttgttatttcttattataatctttattttatttttgacataatt
atgacctttctttcctcccttgtctccctataaaccctcccaaatatacg
tttttctttcttcttcaaaccagtggtcccttttttttgataattgttat
gacatgcaaaaatgtacatgtatgtacacttctaactatggcctatggtc
caccttttgatactttttcttacagagaaatccaagcccaaagatgccta
gaactgggcttgcccattatctgctgcctttggatgggaaacctttctag
gttggcttttgctgcatcagtttgtatagtcaattacttatataaataga
aaaagtccctcataactagtttagatttctctaagaagtggtcaaataac
gcattatgttgccaattcaaatctagttgtgcaaaatatacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_50646402_50646882
seq2: B6Ng01-201F02.b_43_523 (reverse)

seq1  ACCACCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC  50
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC  50

seq1  CTTCCTTGCTTCTCTTTCATTCCTTTTGTCCTTTCACCCTTATCTCCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTGCTTCTCTTTCATTCCTTTTGTCCTTTCACCCTTATCTCCCCT  100

seq1  TCCTCTCTCCCTTTTGTTCTCCCTCCCATCCTTCCTTCCCTCTTTTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCTCCCTTTTGTTCTCCCTCCCATCCTTCCTTCCCTCTTTTTTCT  150

seq1  CTCCTTCATGTTTCTTCCCTTCTTTCCTTCCTTCCAATGCTTGCCTGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCATGTTTCTTCCCTTCTTTCCTTCCTTCCAATGCTTGCCTGTGA  200

seq1  GCATGTTAGCACCATGGTCACCAAAGCAACCAATTCCACTGTAGCCTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTAGCACCATGGTCACCAAAGCAACCAATTCCACTGTAGCCTCAC  250

seq1  AATGAGTTATTTATGTAAGATGCTTACACAGAGATAAAGAGAAAGCACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTTATTTATGTAAGATGCTTACACAGAGATAAAGAGAAAGCACAT  300

seq1  TATATTTTCATAGGAATGACAAGTTATCGTAATTGGAGCATGCTCCCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTCATAGGAATGACAAGTTATCGTAATTGGAGCATGCTCCCTGA  350

seq1  CGCCTTGTCCTAGCTCTGCCTGCGTCTCACTTGTCTCACAACATTCTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTTGTCCTAGCTCTGCCTGCGTCTCACTTGTCTCACAACATTCTCCT  400

seq1  TAGTCCTTAGTGTAGAACTGTCTTTTGTTTTGTTTTGTTTTGTTTTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCTTAGTGTAGAACTGTCTTTTGTTTTGTTTTGTTTTGTTTTGTTT  450

seq1  TGTTTGTTTTTCTTTTAGAATTTTAGAATTC  481
      |||||||||||||||||||||||||||||||
seq2  TGTTTGTTTTTCTTTTAGAATTTTAGAATTC  481


seq1: chr8_50499516_50500658
seq2: B6Ng01-201F02.g_65_1207

seq1  GAATTCACATGCTTGTAGGGTAAGGGCATCTGCTATTTATTATGCATAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGCTTGTAGGGTAAGGGCATCTGCTATTTATTATGCATAGC  50

seq1  TTGCAGTAGAACATGGGCTTTGTATCAGATCCTAGTTCAAATCCCACCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTAGAACATGGGCTTTGTATCAGATCCTAGTTCAAATCCCACCAC  100

seq1  CAGTTGTTATTTCTTTTGTCTATGTGTTATGGATCAATTCTGTGCTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGTTATTTCTTTTGTCTATGTGTTATGGATCAATTCTGTGCTCTGT  150

seq1  ACCTGTGAAGTTGGAATAATTACAAGGGAAACAAATAAACACTGGGGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGAAGTTGGAATAATTACAAGGGAAACAAATAAACACTGGGGTGT  200

seq1  ATGTTAGTAACATAGAGAGCTCATGCCTTCATTATGCTCTCCTTAAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGTAACATAGAGAGCTCATGCCTTCATTATGCTCTCCTTAAATAT  250

seq1  ATATTTTGGCCAAGTGGTGGTGGCCCATACCTTTAACGCCAGCACTTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGGCCAAGTGGTGGTGGCCCATACCTTTAACGCCAGCACTTGGG  300

seq1  AGGCAGAGACAAAAAGATCTCCAGGTTCAAGGACAGCCTGGTCTAGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGACAAAAAGATCTCCAGGTTCAAGGACAGCCTGGTCTAGAGAG  350

seq1  TGAGTTCCAAGACAGTCAACAAGAAACAAACAAACAAACAAACAAAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCCAAGACAGTCAACAAGAAACAAACAAACAAACAAACAAAAAAC  400

seq1  CACAACAAAACCACAATAAAACAAAAGGTACACAACCATTTAGTCATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACAAAACCACAATAAAACAAAAGGTACACAACCATTTAGTCATATT  450

seq1  ATAAATACAAGGAGAGTGGAAGAGGAGGGGGCACACGCATTTATAATTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATACAAGGAGAGTGGAAGAGGAGGGGGCACACGCATTTATAATTCT  500

seq1  CCTGTCTTAGTTTCTTTTCCGGATGTAACTGGCAGACACCTCTGCCTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTTAGTTTCTTTTCCGGATGTAACTGGCAGACACCTCTGCCTTGG  550

seq1  ATGTATATATATTTAAAAGATATATCCTTTACACCTCCCATGTTCTGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATATATATTTAAAAGATATATCCTTTACACCTCCCATGTTCTGTAA  600

seq1  ATACATATCAACTCATCAGTTTTTCTGTGAAGTTTCATAATACTGAATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATCAACTCATCAGTTTTTCTGTGAAGTTTCATAATACTGAATGA  650

seq1  TGAAAGAGGCAGAACTGTCTACCAACAATCTTAATATTAAAACAATACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAGGCAGAACTGTCTACCAACAATCTTAATATTAAAACAATACTT  700

seq1  AGTGTTTTGTTATTTCTTATTATAATCTTTATTTTATTTTTGACATAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTTGTTATTTCTTATTATAATCTTTATTTTATTTTTGACATAATT  750

seq1  ATGACCTTTCTTTCCTCCCTTGTCTCCCTATAAACCCTCCCAAATATACG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTTTCTTTCCTCCCTTGTCTCCCTATAAACCCTCCCAAATATACG  800

seq1  -TTTTCTTTCTTCTTCAAACCAGTGGTCCC-TTTTTTTGATAATTGTTAT  848
       ||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTTTCTTTCTTCTTCAAACCAGTGGTCCCTTTTTTTTGATAATTGTTAT  850

seq1  GACATGCAAAAATGTACATGTATGTACACTTCTAACTATGGCCTATGGTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGCAAAAATGTACATGTATGTACACTTCTAACTATGGCCTATGGTC  900

seq1  CACC-TTTGATAC-TTTTCTTACAGAGAAATCCAAG-CCAAAGATG-CTA  944
      |||| |||||||| |||||||||||||||||||||| ||||||||| |||
seq2  CACCTTTTGATACTTTTTCTTACAGAGAAATCCAAGCCCAAAGATGCCTA  950

seq1  GAACT-GGCTTGCCCATTATCTGCTGCCTTT-GAT-GGAAACCTTCCTA-  990
      ||||| ||||||||||||||||||||||||| ||| ||||||||| ||| 
seq2  GAACTGGGCTTGCCCATTATCTGCTGCCTTTGGATGGGAAACCTTTCTAG  1000

seq1  GTTGGTTTTTGCTGCATCAAGTTTGTATTAGTCATTTACTTATATAAAAT  1040
      ||||| |||||||||||| |||||||| |||||| |||||||||| ||||
seq2  GTTGGCTTTTGCTGCATC-AGTTTGTA-TAGTCAATTACTTATAT-AAAT  1047

seq1  AG-AAAAGT-CCTCATAAACTAGTTTAGATTTCTCTAAAGAAAGTTGTTT  1088
      || |||||| |||||| |||||||||||||||||||||   |||| |  |
seq2  AGAAAAAGTCCCTCAT-AACTAGTTTAGATTTCTCTAA--GAAGTGG--T  1092

seq1  AAATTAAAGGATTAATGTTGCCACAATTCAAATCTTAATTTGTG-AAAAT  1137
       || ||| | ||| |||||||  ||||||||||||  | ||||| |||||
seq2  CAAATAACGCATT-ATGTTGC--CAATTCAAATCT--AGTTGTGCAAAAT  1137

seq1  ATACTA  1143
      ||||||
seq2  ATACTA  1143


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