BAC Information

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BAC

Clone NameB6Ng01-201F17
Chromosome8 (Build37)
Map Location 72,383,204 - 72,384,208
singlet/doubletsinglet
Overlap genePbx4
Upstream geneLpl, LOC100041138, Slc18a1, Atp6v1b2, Lzts1, EG665540, D10627, LOC665553, D130040H23Rik, LOC665561, LOC670593, EG665578, LOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4
Downstream geneCilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201F17.bB6Ng01-201F17.g
ACCGA022155GA022156
length1,0191,175
definitionB6Ng01-201F17.b B6Ng01-201F17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcagcctctgcacatatggggtgggcagctggctggatagctc
agtggataaaggcacttaccacctgatggatggatgacctgagttccatc
cctaggacccacatggtggaattgactctagcaaggtatcctctgacctc
cacacatgtttcatggcacatgccccatctcacaaataaagaagtatagt
aaaacaagttaaatgaaaaagagggccgggcgtggtggcacacgccttta
atcccagcacttgggaggcagaggcaggtggatttctgagtttgaggcca
gcctggtctacagagtgagttccaggacagccagggctacacagagaaac
cctttctcagggaaaaaaaaaaaaaaaaacaacaacaacaacaaaaatga
aaaagaggtgtggttggatcactttccatgcatgcatgaggccagagttc
tgattcccagcacctgtgtaaatggtagcaatcctagtaagataggatcc
agggtcaagcacgctttctagacttgccaaaccaggtggttctggattca
agtgagaggccttagctcaatgtgtaaagtggaaggggctggagagacga
tggctcagcagttaagagcactggctgctcttacagaggacccagcttca
agttccagcagcagactactctcacatgcacagacatccatacaggcaaa
acaccagtccagtatgtgtgtgtgtgttaatgatcaaggaaaacattgat
gccaaccatggacctacatacacttgtacacctacacaaaatactacaca
cacatgtacatgccaaagaataggccagggcctcagagcacagtccttat
caacagtctcaggaagctgaggcacaaagatgcaagttcatgtgaccctg
gcctttccttataaaaccttgtttcaaatttaattaagtgcactaccttt
taatctaccactcaagaaggcagaagacagggaagaattcttccgtggag
ttccaggttagcctggtct
gaattcttatgttccagcttctccctcagtgctgaggctataggtatatg
catgggttttaggtggatgccaaggatggaaggcagaactgtactaggca
agcactctaccatctgagctatatccccagcccagaagtagggcaattca
cagcatgtgtatagaggtcagagaacaacttaggagagagttggttatct
ctttccaccatgtcagttccagttatcagagtctggtgtttagggttggt
aacatgtgcctttactgagtcatcttgctagccttgcaaaagtttagaca
tagattcatggagatgtaaatgtcataccatgatcaccgtttatagagta
cattttgctaagttttgggttgtttttggtttgtttgtttgtttgtttgt
tctttttgtaagattgattgattgatttaataagagggcatcagatctca
ttacagatggttgtgggccaccatgtggttgctgggaattgaattcagga
cctctggaagagcagtcagtgctcttaaccactgagccaacttgccagcc
tgctaagttttgtttcacacacgttttcattgctgtagtccaaatggtaa
actactcaaaactcctcacatgtccatgggatttaaaatgtagttgagaa
gaacacttggtgctcttccagagggcctaggttcaattcccagcatctag
tggtgcagtctataactctagttccaggagatttgagtccctcttttggc
ctctacatttacctggtacacagacatacatgcaagcaaagcacttagca
cataaaaataaataaaatgttagcttggacatagtattgtgggcctgcag
aagaaagtaggagcctcaagggctcagctctatacttttgaggaccaagc
ctatatatactgccataagatccttgtctcaagaaatttaaggaaaaccg
ggaatgaagatgtagttcactaagtagaatgccttgcttagcattcaaga
agttcctgggatttcatcaccttgttacctcatacttgtgcatggtgagt
aaatgagtgccaggagttcagggctctagcctttggcgcatgttagaaga
gacctttactccaaggggagaaaatatgtctcatagtcatcttcttcaga
attaaggaatgtgtctacagaacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_72383204_72384208
seq2: B6Ng01-201F17.b_45_1063

seq1  GAATTCTTCAGCCTCTGCACATATGGGGTGGGCAGCTGGCTGGATAGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGCCTCTGCACATATGGGGTGGGCAGCTGGCTGGATAGCTC  50

seq1  AGTGGATAAAGGCACTTACCACCTGATGGATGGATGACCTGAGTTCCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGATAAAGGCACTTACCACCTGATGGATGGATGACCTGAGTTCCATC  100

seq1  CCTAGGACCCACATGGTGGAATTGACTCTAGCAAGGTATCCTCTGACCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGACCCACATGGTGGAATTGACTCTAGCAAGGTATCCTCTGACCTC  150

seq1  CACACATGTTTCATGGCACATGCCCCATCTCACAAATAAAGAAGTATAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATGTTTCATGGCACATGCCCCATCTCACAAATAAAGAAGTATAGT  200

seq1  AAAACAAGTTAAATGAAAAAGAGGGCCGGGCGTGGTGGCACACGCCTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAGTTAAATGAAAAAGAGGGCCGGGCGTGGTGGCACACGCCTTTA  250

seq1  ATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCA  300

seq1  GCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAAC  350

seq1  CCTTTCTCAGGGAAAAAAAAAAAAAAAAACAACAACAACAACAAAAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTCAGGGAAAAAAAAAAAAAAAAACAACAACAACAACAAAAATGA  400

seq1  AAAAGAGGTGTGGTTGGATCACTTTCCATGCATGCATGAGGCCAGAGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGGTGTGGTTGGATCACTTTCCATGCATGCATGAGGCCAGAGTTC  450

seq1  TGATTCCCAGCACCTGTGTAAATGGTAGCAATCCTAGTAAGATAGGATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCCCAGCACCTGTGTAAATGGTAGCAATCCTAGTAAGATAGGATCC  500

seq1  AGGGTCAAGCACGCTTTCTAGACTTGCCAAACCAGGTGGTTCTGGATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCAAGCACGCTTTCTAGACTTGCCAAACCAGGTGGTTCTGGATTCA  550

seq1  AGTGAGAGGCCTTAGCTCAATGTGTAAAGTGGAAGGGGCTGGAGAGACGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGAGGCCTTAGCTCAATGTGTAAAGTGGAAGGGGCTGGAGAGACGA  600

seq1  TGGCTCAGCAGTTAAGAGCACTGGCTGCTCTTACAGAGGACCCAGCTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAGCAGTTAAGAGCACTGGCTGCTCTTACAGAGGACCCAGCTTCA  650

seq1  AGTTCCAGCAGCAGACTACTCTCACATGCACAGACATCCATACAGGCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGCAGCAGACTACTCTCACATGCACAGACATCCATACAGGCAAA  700

seq1  ACACCAGTCCAGTATGTGTGTGTGTGTTAATGATCAAGGAAAACATTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGTCCAGTATGTGTGTGTGTGTTAATGATCAAGGAAAACATTGAT  750

seq1  GCCAACCATGGACCTACATACAC-TGTACACCTACAC-AAATACTACACA  798
      ||||||||||||||||||||||| ||||||||||||| ||||||||||||
seq2  GCCAACCATGGACCTACATACACTTGTACACCTACACAAAATACTACACA  800

seq1  CACATGTACATG-CAAAGAATAGGCCA-GGCCTCAGAGCACAGTCC-TAT  845
      |||||||||||| |||||||||||||| |||||||||||||||||| |||
seq2  CACATGTACATGCCAAAGAATAGGCCAGGGCCTCAGAGCACAGTCCTTAT  850

seq1  CAACAGTC-CAGGAAGCTGAGGCACAAAGATGCAAGTTCAATGTGACCCT  894
      |||||||| |||||||||||||||||||||||||||||| ||||||||||
seq2  CAACAGTCTCAGGAAGCTGAGGCACAAAGATGCAAGTTC-ATGTGACCCT  899

seq1  GGCC-TTCCTTATAAAACC-TGTCTCAAAATTAATTAAAGTGCAC-ACC-  940
      |||| |||||||||||||| ||| ||||| |||||| |||||||| ||| 
seq2  GGCCTTTCCTTATAAAACCTTGTTTCAAATTTAATT-AAGTGCACTACCT  948

seq1  TTTAATCTTACCACTCAAG-AGGCAG-AGACA-GGAAGA--TC-TCCGT-  983
      ||||||| ||||||||||| |||||| ||||| ||||||  || ||||| 
seq2  TTTAATC-TACCACTCAAGAAGGCAGAAGACAGGGAAGAATTCTTCCGTG  997

seq1  GAGTTCAAGGTTAGCCTGGTCT  1005
      |||||| |||||||||||||||
seq2  GAGTTCCAGGTTAGCCTGGTCT  1019