BAC Information

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BAC

Clone NameB6Ng01-201L23
Chromosome8 (Build37)
Map Location 59,330,740 - 59,470,267
singlet/doubletdoublet
Overlap geneLOC654355
Upstream geneAdam29, Glra3, LOC664812, Hpgd, LOC664948, BC088983, Fbxo8, LOC100040431, EG624433
Downstream geneLOC100040515, Hand2, Scrg1, Sap30, Hmgb2, LOC547012, Galnt7, LOC100040634, LOC100040711
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201L23.bB6Ng01-201L23.g
ACCGA022432GA022433
length1,1581,152
definitionB6Ng01-201L23.b B6Ng01-201L23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,469,109 - 59,470,267)(59,330,740 - 59,331,901)
sequence
gaattcctcttatatcaacgagtgagcattgtccttcttagaagactttt
atctactctgatctttggtacttgatacagttgaaatatttttcataata
gcttctatgggttaatcactcatctattccgttttgctgtgtttttgatc
cttgtgtcaattttattctcactaattaatatttgcataatctaatattt
tccattctttttggtgccagatttaattacacatgctctggccacttgtt
tatttcatttaagaatttaaagtttattttttgtttgattatcataacaa
gtacaagtagcaaaagatttacgtactagttaatggaattctgttttgtc
tttcctattgagaaagaacacaatttatgagtggctcagtgtttatcaga
agacatgattcaaatatatactctctctccctttacacacacacacacac
acacacacacacacacacacacacacacacacagtttctttactttgggg
aagtttagaaatcactaaggcctcgtgtcctcagaattctcattcactga
atagttcatcatgatcatgaagaggcacgcaaggtttagctatggagaag
tcttgacggatgggttccagtcttttctagctttagttagtgtgtgggac
attatattttcatattctctcaaatcactttaggagtatgctggctgtgg
tagctagttttcccagtgccgtgatcaaatacctgagagaaacagaagaa
gaaagatttacttgggctcacagtttcagagggctcagatcacggtggct
cggctccacgcatttgggcagaacatcatgctggtgaaagtgtatggata
atgtgactctcaggtgagggtggaatggaagtagagaatgagcaagaaac
caagggccaatcctgaccttcctactgacccacatcctttcatgtaggcg
ccacctcccacaacagcctgaccacaattaggagctgaggattcacccat
gagtttggtgggggaaaatttttatgtccaacctcaatatggactattat
aaatgccattctagtggattttatttggtactgcttagatagaatatcaa
ttagttatttcaatggcttggaccttaagtgaaacgataacatcatgtta
agccttgg
gaattcagaataaatacaagaaagtatttccatttacttttagcgtggga
gcaacaaaacctaaatgctgattgaaaaatcttcattttgattttgattt
tcgttttcttgtaggattcccctctaccccatttctcccccagcctctct
tttctccatacctctccccacatcctctcttagttttccttattatttct
cttcaacatgattaatttcaagtatggttgaggctaagataaaagcagtt
atttggttgtccctattttttttaaagtataaaaaattctcatcaggata
attgtgatgaatttctttgtatgtgatctctcaatatgaatctggatgaa
cacattctaagcgtttcttcttccctaattaatccatcattttttctcta
aattaaatttatttatttatttatttatattttttgcatgtatgtctgtg
cttccagagcccaaaaagagcttttgattctttgaaactagagtttcaga
tgataataacctgccacgtgtgtgctggaactcaaactcaagatttgtgg
ctgagcaccaaatacctttaactgctgagctccctctccaattccccttt
tctctacattttgagaaattcccttgtcttgccacctctttcaccaaaat
gtgacatataaatacagattaaataagtgaatgactcccaagcgcactgt
gcgttggtgggagaaaaaaaaattaagagatctaaacaaagaagactaca
tccatattatggaatttatagctgagatatatgttcttttaaacttcaca
ctccctgctatttatcatctcctcctcaaaaaccccaaagatctctctca
ttaaaaggcaataaaaatgtaggaaaagctcctaaaaatagctctcctgt
cgtactcttcactggcttttccaaagatgtataaactaagagcagtgtaa
gacaatgctttctactgaaccttcacacacaaaatccaagtcatttatca
aaaacaggggaaatctctaaatagaaattgtgtattaaacagatagtttt
aaccatctactgtacactccttttctggaatttgagaaaatatgcaacct
ctttatctagtagaaatatataatgaattataaactgtacccaatgtttt
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_59469109_59470267
seq2: B6Ng01-201L23.b_50_1207 (reverse)

seq1  CCAAGGC-TAACATTGATGTTTATTCGTTTCACTTAAAGTCCAGCCCATG  49
      ||||||| ||||| |||||||   ||||||||||||| |||||  |||| 
seq2  CCAAGGCTTAACA-TGATGTT--ATCGTTTCACTTAAGGTCCAAGCCATT  47

seq1  GAAATAACTAATGAATA-TCTA-CTAAGCAAGTTACAAAT-AAATCACTT  96
      ||||||||||||  ||| |||| |||||| |||  ||||| |||||   |
seq2  GAAATAACTAATTGATATTCTATCTAAGC-AGTACCAAATAAAATCCACT  96

seq1  AGAATGGCATTTAATAATAGTCCATATTGAGGTTTGAACAT-AAAATTTT  145
      |||||||||||| ||||||||||||||||||| ||| |||| ||||||||
seq2  AGAATGGCATTT-ATAATAGTCCATATTGAGG-TTGGACATAAAAATTTT  144

seq1  CCCC--ACAAACTCATGGGTTGAATCCTCAGCTCCTAATTGGTGGTCAGG  193
      ||||   |||||||||||| |||||||||||||||||||| |||||||||
seq2  CCCCCACCAAACTCATGGG-TGAATCCTCAGCTCCTAATT-GTGGTCAGG  192

seq1  CTTGTGTTGGGAGGTGGCGCCTACATG-AAGGATGTGGGTCAGTAGGAAG  242
      | |||  |||||||||||||||||||| ||||||||||||||||||||||
seq2  C-TGTTGTGGGAGGTGGCGCCTACATGAAAGGATGTGGGTCAGTAGGAAG  241

seq1  GTCAGGATTGGCCCTTGGTTTCTTGCTCATTCTCTACTTCCATTCCACCC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGATTGGCCCTTGGTTTCTTGCTCATTCTCTACTTCCATTCCACCC  291

seq1  TCACCTGAGAGTCACATTATCCATACACTTTCACCAGCATGATGTTCTGC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGAGAGTCACATTATCCATACACTTTCACCAGCATGATGTTCTGC  341

seq1  CCAAATGCGTGGAGCCGAGCCACCGTGATCTGAGCCCTCTGAAACTGTGA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGCGTGGAGCCGAGCCACCGTGATCTGAGCCCTCTGAAACTGTGA  391

seq1  GCCCAAGTAAATCTTTCTTCTTCTGTTTCTCTCAGGTATTTGATCACGGC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAGTAAATCTTTCTTCTTCTGTTTCTCTCAGGTATTTGATCACGGC  441

seq1  ACTGGGAAAACTAGCTACCACAGCCAGCATACTCCTAAAGTGATTTGAGA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGAAAACTAGCTACCACAGCCAGCATACTCCTAAAGTGATTTGAGA  491

seq1  GAATATGAAAATATAATGTCCCACACACTAACTAAAGCTAGAAAAGACTG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGAAAATATAATGTCCCACACACTAACTAAAGCTAGAAAAGACTG  541

seq1  GAACCCATCCGTCAAGACTTCTCCATAGCTAAACCTTGCGTGCCTCTTCA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCATCCGTCAAGACTTCTCCATAGCTAAACCTTGCGTGCCTCTTCA  591

seq1  TGATCATGATGAACTATTCAGTGAATGAGAATTCTGAGGACACGAGGCCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATGATGAACTATTCAGTGAATGAGAATTCTGAGGACACGAGGCCT  641

seq1  TAGTGATTTCTAAACTTCCCCAAAGTAAAGAAACTGTGTGTGTGTGTGTG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGATTTCTAAACTTCCCCAAAGTAAAGAAACTGTGTGTGTGTGTGTG  691

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAAGGGAGAGAGAGTAT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAAGGGAGAGAGAGTAT  741

seq1  ATATTTGAATCATGTCTTCTGATAAACACTGAGCCACTCATAAATTGTGT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGAATCATGTCTTCTGATAAACACTGAGCCACTCATAAATTGTGT  791

seq1  TCTTTCTCAATAGGAAAGACAAAACAGAATTCCATTAACTAGTACGTAAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCAATAGGAAAGACAAAACAGAATTCCATTAACTAGTACGTAAA  841

seq1  TCTTTTGCTACTTGTACTTGTTATGATAATCAAACAAAAAATAAACTTTA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGCTACTTGTACTTGTTATGATAATCAAACAAAAAATAAACTTTA  891

seq1  AATTCTTAAATGAAATAAACAAGTGGCCAGAGCATGTGTAATTAAATCTG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTAAATGAAATAAACAAGTGGCCAGAGCATGTGTAATTAAATCTG  941

seq1  GCACCAAAAAGAATGGAAAATATTAGATTATGCAAATATTAATTAGTGAG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAAAAAGAATGGAAAATATTAGATTATGCAAATATTAATTAGTGAG  991

seq1  AATAAAATTGACACAAGGATCAAAAACACAGCAAAACGGAATAGATGAGT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATTGACACAAGGATCAAAAACACAGCAAAACGGAATAGATGAGT  1041

seq1  GATTAACCCATAGAAGCTATTATGAAAAATATTTCAACTGTATCAAGTAC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAACCCATAGAAGCTATTATGAAAAATATTTCAACTGTATCAAGTAC  1091

seq1  CAAAGATCAGAGTAGATAAAAGTCTTCTAAGAAGGACAATGCTCACTCGT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATCAGAGTAGATAAAAGTCTTCTAAGAAGGACAATGCTCACTCGT  1141

seq1  TGATATAAGAGGAATTC  1159
      |||||||||||||||||
seq2  TGATATAAGAGGAATTC  1158

seq1: chr8_59330740_59331901
seq2: B6Ng01-201L23.g_62_1213

seq1  GAATTCAGAATAAATACAAGAAAGTATTTCCATTTACTTTTAGCGTGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAATAAATACAAGAAAGTATTTCCATTTACTTTTAGCGTGGGA  50

seq1  GCAACAAAACCTAAATGCTGATTGAAAAATCTTCATTTTGATTTTGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAAAACCTAAATGCTGATTGAAAAATCTTCATTTTGATTTTGATTT  100

seq1  TCGTTTTCTTGTAGGATTCCCCTCTACCCCATTTCTCCCCCAGCCTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTTTCTTGTAGGATTCCCCTCTACCCCATTTCTCCCCCAGCCTCTCT  150

seq1  TTTCTCCATACCTCTCCCCACATCCTCTCTTAGTTTTCCTTATTATTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCATACCTCTCCCCACATCCTCTCTTAGTTTTCCTTATTATTTCT  200

seq1  CTTCAACATGATTAATTTCAAGTATGGTTGAGGCTAAGATAAAAGCAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACATGATTAATTTCAAGTATGGTTGAGGCTAAGATAAAAGCAGTT  250

seq1  ATTTGGTTGTCCCTATTTTTTTTAAAGTATAAAAAATTCTCATCAGGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTTGTCCCTATTTTTTTTAAAGTATAAAAAATTCTCATCAGGATA  300

seq1  ATTGTGATGAATTTCTTTGTATGTGATCTCTCAATATGAATCTGGATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGATGAATTTCTTTGTATGTGATCTCTCAATATGAATCTGGATGAA  350

seq1  CACATTCTAAGCGTTTCTTCTTCCCTAATTAATCCATCATTTTTTCTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCTAAGCGTTTCTTCTTCCCTAATTAATCCATCATTTTTTCTCTA  400

seq1  AATTAAATTTATTTATTTATTTATTTATATTTTTTGCATGTATGTCTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATTTATTTATTTATTTATTTATATTTTTTGCATGTATGTCTGTG  450

seq1  CTTCCAGAGCCCAAAAAGAGCTTTTGATTCTTTGAAACTAGAGTTTCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGAGCCCAAAAAGAGCTTTTGATTCTTTGAAACTAGAGTTTCAGA  500

seq1  TGATAATAACCTGCCACGTGTGTGCTGGAACTCAAACTCAAGATTTGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATAACCTGCCACGTGTGTGCTGGAACTCAAACTCAAGATTTGTGG  550

seq1  CTGAGCACCAAATACCTTTAACTGCTGAGCTCCCTCTCCAATTCCCCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCACCAAATACCTTTAACTGCTGAGCTCCCTCTCCAATTCCCCTTT  600

seq1  TCTCTACATTTTGAGAAATTCCCTTGTCTTGCCACCTCTTTCACCAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACATTTTGAGAAATTCCCTTGTCTTGCCACCTCTTTCACCAAAAT  650

seq1  GTGACATATAAATACAGATTAAATAAGTGAATGACTCCCAAGCGCACTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATATAAATACAGATTAAATAAGTGAATGACTCCCAAGCGCACTGT  700

seq1  GCGTTGGTGGGAGAAAAAAAAATTAAGAGATCTAAACAAAGAAGACTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTGGTGGGAGAAAAAAAAATTAAGAGATCTAAACAAAGAAGACTACA  750

seq1  TCCATATTATGGAATTTATAGCTGAGATATATGTTCTTTTAAACTTCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATTATGGAATTTATAGCTGAGATATATGTTCTTTTAAACTTCACA  800

seq1  CTCCCTGCTATTTATCATCTCCTCCTCAAAAACCCCAAAGATCTCTCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGCTATTTATCATCTCCTCCTCAAAAACCCCAAAGATCTCTCTCA  850

seq1  TTAAAAGGCAATAAAAATGTAGGAAAAGCTCCTAAAAATAGCTCTCCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGGCAATAAAAATGTAGGAAAAGCTCCTAAAAATAGCTCTCCTGT  900

seq1  CGTACTCTTCACTGGCTTTTCCAAAGATGTATAAACTAAGAGCAGTGTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACTCTTCACTGGCTTTTCCAAAGATGTATAAACTAAGAGCAGTGTAA  950

seq1  GACAAATGCTTTCTACTGAACCTTCACACACAAAATCCAAGTCATTTATC  1000
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAC-AATGCTTTCTACTGAACCTTCACACACAAAATCCAAGTCATTTATC  999

seq1  AAAAACAGGGGGAAATCTCTAAATAGAAA-TGTGTA-TAAACAAGGATAG  1048
      ||||||| ||||||||||||||||||||| |||||| ||||||  |||||
seq2  AAAAACA-GGGGAAATCTCTAAATAGAAATTGTGTATTAAACA--GATAG  1046

seq1  TTTTAAACCATCTACTGTACAACTCCTTTTCTGGAATTTGAAGAAAATAT  1098
      |||| ||||||||||||||| ||||||||||||||||||| |||||||||
seq2  TTTT-AACCATCTACTGTAC-ACTCCTTTTCTGGAATTTG-AGAAAATAT  1093

seq1  GGGAACTCTTTTATCTAGTAGAATATATAATAATGAAATTATAAAATGTA  1148
      |  | ||| |||||||||||||| |||| |||||| ||||||||| ||||
seq2  GCAACCTC-TTTATCTAGTAGAA-ATAT-ATAATG-AATTATAAACTGTA  1139

seq1  CCAATGTGTTTTAA  1162
      || |  ||||||||
seq2  CCCA-ATGTTTTAA  1152