BAC Information

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BAC

Clone NameB6Ng01-202E20
Chromosome8 (Build37)
Map Location 65,836,492 - 65,922,371
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC384830, LOC100040804, LOC665267, Spock3
Downstream geneLOC384831, EG244495, Tll1, LOC100040989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202E20.bB6Ng01-202E20.g
ACCGA022833GA022834
length1,148453
definitionB6Ng01-202E20.b B6Ng01-202E20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,921,241 - 65,922,371)(65,836,492 - 65,836,950)
sequence
gaattcattattgactcagcactctgaggtcataaagaatccgagaacca
atcataatgtgttggcttaatgtttagtatttgtgttgatgttatatgaa
ccaaccacgccaactaacacacatgcatgcatgtgtatttacacacacac
acacacacacacacacacacacacacacacaatctaaagttattctcaga
ggaaatatactgtacatctgacctgtacagcgggcccagttattcgttgg
tctccaggggactcttgaaaccaaatgggggatgagagagaaacggagcc
aagcacagaaaagacatggagtcaatctgaatcttgtcaaggtctcattg
tgttcagcaaaacttgtagtttttatacacaaagatcaaaggggaaataa
cccttacgcagaagggcaggggaggggacagtggtaattttccttggtga
ctacaatgatatctaaaagtacatcttgtggttatgacatctgctcttta
cgtcagtcaggtctagcatcatctcgcggtaattgttggtgaccttcatc
tggacttagtcagcttgaggagggggtccatctgggaatagtccgttggt
gacctttgtctggacttagtcaccttggggaggagttccaactttatgtc
ctaagacttggtagttcacttggattattataaagaatttagttagggct
cccaacatccatccatattccagagagtaactgctaaaaagttggtgtca
tctataaacctctgttgcagttatgatggtttccatgaatgatattattc
tagacagtaggaatattagatgcccaaaaattgactaaacatagggggac
acagaatttacctatcagaagacagttatttttactaaatgatgattttg
ctagattaagaataaagatattaaagaagcaaacatacagacttacattt
tctgtctggtgaagaaggaagtggcttttattcaccatgaccctgctagg
agggtaggttactttaaatactgaagaatatctttcctagcctatgcttc
agtgtaaatatttatcatgttctcataagaatgcttttttattcctctgt
gatggaatgataaaaataggtaacatctataccttaaataaataatat

taagtattaaagttagacagtatacatatatttctagtacattaattgat
atagttatattttctactataatgcatcaagaattttattttacagattt
aagtgcagaaggacttttgaacttacaattctttcattctgattaggagg
ttaaggaatcatctttagctaaaagaaagaatctaatgttttatcgtgct
ttatgctgaattcttattcatgagcaagaaagcaaactaagataatattt
taatctccattttatgacattatttttcaaaacatagcagatcaaaaacc
atttgacagttttaattagaaccagtcaaatattaagcattgaagaaatt
gatacaaagtatttaatgaaattatttagtgtttctggtatatcacaaat
ctacaaattagcaaatagtggatgtggggtggtgtgctggtggtttgtgt
gtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_65921241_65922371
seq2: B6Ng01-202E20.b_42_1189 (reverse)

seq1  ATATTATT------AAGTATAGATGTTACTTATTTTTATTCAATTCATCA  44
      ||||||||      | ||||||||||||| |||||||| ||| | |||||
seq2  ATATTATTTATTTAAGGTATAGATGTTACCTATTTTTA-TCATTCCATCA  49

seq1  CAGA-GAATAAAAAGGCATTCTTATGAGAACATGATAAATA-TTACACTG  92
      |||| ||||||||| |||||||||||||||||||||||||| ||||||||
seq2  CAGAGGAATAAAAAAGCATTCTTATGAGAACATGATAAATATTTACACTG  99

seq1  -AGCATAGGCTA-GAAAGATATTC-TCAGTATTT-AAGTAA-CTACC--T  135
       ||||||||||| ||||||||||| ||||||||| |||||| |||||   
seq2  AAGCATAGGCTAGGAAAGATATTCTTCAGTATTTAAAGTAACCTACCCTC  149

seq1  CTAGCA-GGTCATGGTGAATAAAAGCCACTTCCTTC-TCACCAGACAGAA  183
      |||||| ||||||||||||||||||||||||||||| |||||||||||||
seq2  CTAGCAGGGTCATGGTGAATAAAAGCCACTTCCTTCTTCACCAGACAGAA  199

seq1  AATGTAAGTCTGTATGTTTGCTTC-TTAATATCTTTATTCTTAATCTAGC  232
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AATGTAAGTCTGTATGTTTGCTTCTTTAATATCTTTATTCTTAATCTAGC  249

seq1  AAAATCATCATTTAGTAAAAATAACTGTCTTCTGATAGGTAAATTCTGTG  282
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCATCATTTAGTAAAAATAACTGTCTTCTGATAGGTAAATTCTGTG  299

seq1  TCCCCCTATGTTTAGTCAATTTTTGGGCATCTAATATTCCTACTGTCTAG  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTATGTTTAGTCAATTTTTGGGCATCTAATATTCCTACTGTCTAG  349

seq1  AATAATATCATTCATGGAAACCATCATAACTGCAACAGAGGTTTATAGAT  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATATCATTCATGGAAACCATCATAACTGCAACAGAGGTTTATAGAT  399

seq1  GACACCAACTTTTTAGCAGTTACTCTCTGGAATATGGATGGATGTTGGGA  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCAACTTTTTAGCAGTTACTCTCTGGAATATGGATGGATGTTGGGA  449

seq1  GCCCTAACTAAATTCTTTATAATAATCCAAGTGAACTACCAAGTCTTAGG  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAACTAAATTCTTTATAATAATCCAAGTGAACTACCAAGTCTTAGG  499

seq1  ACATAAAGTTGGAACTCCTCCCCAAGGTGACTAAGTCCAGACAAAGGTCA  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAGTTGGAACTCCTCCCCAAGGTGACTAAGTCCAGACAAAGGTCA  549

seq1  CCAACGGACTATTCCCAGATGGACCCCCTCCTCAAGCTGACTAAGTCCAG  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACGGACTATTCCCAGATGGACCCCCTCCTCAAGCTGACTAAGTCCAG  599

seq1  ATGAAGGTCACCAACAATTACCGCGAGATGATGCTAGACCTGACTGACGT  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGTCACCAACAATTACCGCGAGATGATGCTAGACCTGACTGACGT  649

seq1  AAAGAGCAGATGTCATAACCACAAGATGTACTTTTAGATATCATTGTAGT  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCAGATGTCATAACCACAAGATGTACTTTTAGATATCATTGTAGT  699

seq1  CACCAAGGAAAATTACCACTGTCCCCTCCCCTGCCCTTCTGCGTAAGGGT  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGGAAAATTACCACTGTCCCCTCCCCTGCCCTTCTGCGTAAGGGT  749

seq1  TATTTCCCCTTTGATCTTTGTGTATAAAAACTACAAGTTTTGCTGAACAC  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCCCTTTGATCTTTGTGTATAAAAACTACAAGTTTTGCTGAACAC  799

seq1  AATGAGACCTTGACAAGATTCAGATTGACTCCATGTCTTTTCTGTGCTTG  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGACCTTGACAAGATTCAGATTGACTCCATGTCTTTTCTGTGCTTG  849

seq1  GCTCCGTTTCTCTCTCATCCCCCATTTGGTTTCAAGAGTCCCCTGGAGAC  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCGTTTCTCTCTCATCCCCCATTTGGTTTCAAGAGTCCCCTGGAGAC  899

seq1  CAACGAATAACTGGGCCCGCTGTACAGGTCAGATGTACAGTATATTTCCT  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGAATAACTGGGCCCGCTGTACAGGTCAGATGTACAGTATATTTCCT  949

seq1  CTGAGAATAACTTTAGATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAATAACTTTAGATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  999

seq1  TGTGTGTGTAAATACACATGCATGCATGTGTGTTAGTTGGCGTGGTTGGT  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTAAATACACATGCATGCATGTGTGTTAGTTGGCGTGGTTGGT  1049

seq1  TCATATAACATCAACACAAATACTAAACATTAAGCCAACACATTATGATT  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATAACATCAACACAAATACTAAACATTAAGCCAACACATTATGATT  1099

seq1  GGTTCTCGGATTCTTTATGACCTCAGAGTGCTGAGTCAATAATGAATTC  1131
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTCGGATTCTTTATGACCTCAGAGTGCTGAGTCAATAATGAATTC  1148


seq1: chr8_65836492_65836950
seq2: B6Ng01-202E20.g_64_522

seq1  GAATTCTAAGTATTAAAGTTAGACAGTATACATATATTTCTAGTACATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGTATTAAAGTTAGACAGTATACATATATTTCTAGTACATTA  50

seq1  ATTGATATAGTTATATTTTCTACTATAATGCATCAAGAATTTTATTTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATATAGTTATATTTTCTACTATAATGCATCAAGAATTTTATTTTAC  100

seq1  AGATTTAAGTGCAGAAGGACTTTTGAACTTACAATTCTTTCATTCTGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTAAGTGCAGAAGGACTTTTGAACTTACAATTCTTTCATTCTGATT  150

seq1  AGGAGGTTAAGGAATCATCTTTAGCTAAAAGAAAGAATCTAATGTTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTTAAGGAATCATCTTTAGCTAAAAGAAAGAATCTAATGTTTTAT  200

seq1  CGTGCTTTATGCTGAATTCTTATTCATGAGCAAGAAAGCAAACTAAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCTTTATGCTGAATTCTTATTCATGAGCAAGAAAGCAAACTAAGATA  250

seq1  ATATTTTAATCTCCATTTTATGACATTATTTTTCAAAACATAGCAGATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAATCTCCATTTTATGACATTATTTTTCAAAACATAGCAGATCA  300

seq1  AAAACCATTTGACAGTTTTAATTAGAACCAGTCAAATATTAAGCATTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCATTTGACAGTTTTAATTAGAACCAGTCAAATATTAAGCATTGAA  350

seq1  GAAATTGATACAAAGTATTTAATGAAATTATTTAGTGTTTCTGGTATATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGATACAAAGTATTTAATGAAATTATTTAGTGTTTCTGGTATATC  400

seq1  ACAAATCTACAAATTAGCAAATAGTGGATGTGGGGTGGTGTGCTGGTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCTACAAATTAGCAAATAGTGGATGTGGGGTGGTGTGCTGGTGGT  450

seq1  TTGTGTGTG  459
      |||||||||
seq2  TTGTGTGTG  459


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