BAC Information

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BAC

Clone NameB6Ng01-203E09
Chromosome8 (Build37)
Map Location 73,662,979 - 73,806,722
singlet/doubletdoublet
Overlap geneLOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b
Upstream geneRfxank, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057
Downstream gene2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996, LOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372, Olfr373, Olfr374, Tpm4, Rab8a, Hsh2d, Cib3, 2510049I19Rik, Ap1m1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203E09.bB6Ng01-203E09.g
ACCGA023533GA023534
length1,170920
definitionB6Ng01-203E09.b B6Ng01-203E09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,805,545 - 73,806,722)(73,662,979 - 73,663,906)
sequence
gaattcatcagaggaggcagagtggggacccacaaagagcagggcagtcg
actcaagtgttatataaggccataatttgaagccacatgtttagcggatg
aaatcattccctagctaaaaggagagagctggcgttagggcagaatgggc
tgagaggtgggggatcctccacaaccagcagttcctctctgttccccgag
tttctttttctatttgtctgtgtttgtatcctcttcccaccccacagaca
gggtctgactatgtagacaaggctggcctggaataatccatcctcctgcc
tctatctctagagggattaggatcacaggcaggcatgaaccaccacaccc
atcacctaattactatttgaaagcagaatccaaaatgtgctgatgaatga
ctgaaagcagctgatctgacagttgcagatatcacagctgtaggagcctc
ctcggacagccctgacccagacaaagatccacagatataagatggtctca
atgcaaaggccatctgggagttaacagaacatctcacagctcagcttcta
ggtggatagtccagtgtccataggaggagctcacaagaggaattccctct
cctaagtagagatgggctgggggcgtggctcaggggtgaagtccctgcct
agaaccctcagtgaggaactgtggggatgtagcctagtgctacagcactt
gcctccaattcagaaggtcctggtttccattccaaacacattgaaaagaa
aaaaaaaagtgtaggtggccctaggaatgaatcatgggttggctggactc
cagccaaagtccaacagggaaataccaggagaactgtaggtaactacttg
gctcagccactgctgagaggcacatccctggatgcccaagggacacaagg
cttcagagggaaggcaggggtgtatataacttccagccagaactctcagt
gtaagccagcaacacggtgccatccttcagactggcagttggttgggctc
ctccctggatcacatccacttggagcctcagagtattaaagctacttggg
aagagggctgtgacagaagccagagaatatcaagagtcctaggtgcattt
ccttggcactctcttgaaagaccagcgctgaatggtggcacactctggtt
ttatagcacctgtgccagga
gaattcatgctgagatgaacttactgggaacttttctatgattctttgta
cagggatgaaggtcgtgagagaacacctgccttatgtggggatagccatg
cactatatccctagcacagtaaatgaacatttgagtagtcataaataaat
aaggcaattccagttattttcttatatcagaagaaaattagcttcatagt
atgtggtgcttaaaggagatggggctcttatttagcatttgggaatgtcc
ctaaatgtcctttccatttgcaggacgtcactccattatgcatgtgccca
caaccatccagacgtggtggcactattattagaaaataattccagcattg
atatcctggatgatgcaggctgtacacccttgattaaggtagctattggc
catctgttttgatatgaactggactagaggttgtccttgtttggtttctg
ttgctgtgataaaacactgatcaaaaacaactcaggaaaggaaatggtta
tttggcttacatttacacatcacagatcattctcaaggggaaccagggct
ggagctcaaatcaggaactggagggaagaactaactggagttcacaggag
aatacagcttttccatggctttttccaaggcttgctcagcctcttttttt
tttttttttttttaatacaactgaggactttgtcccaggcatgtaccaac
ccctaaaatctgggcttttctactttcatctaaattaaataaaaaaaaaa
aaaaagtccatatagttgcccagaggccagtttcatagaggcatttcctc
cagtgaggatctttccaggtgtgttaagcttgtgtcacattggcaaaagg
aaaaaaaaaaagaaagaaagaagaaaagaaaaaaagaaaaaatcaaccaa
cactatctctgcactgcaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_73805545_73806722
seq2: B6Ng01-203E09.b_46_1215 (reverse)

seq1  TCCTGGCACAGGTGCTATAAACACAGGAGTGTGCCACCATTCAAGCCGGC  50
      ||||||||||||||||||||| ||  |||||||||||||||||    |  
seq2  TCCTGGCACAGGTGCTATAAA-ACCAGAGTGTGCCACCATTCA----GCG  45

seq1  CTTGTGTCTTCTA-AGAGTGCC-AGACACTGCACCTAGGACTTCCTTTGA  98
      || || | ||| | |||||||| ||  | |||||||||||||    ||||
seq2  CTGGTCT-TTCAAGAGAGTGCCAAGGAAATGCACCTAGGACT---CTTGA  91

seq1  TATCCTCTGGCTTCTGTCACAGCCCTCTTCCCAAGTAGCTTT-ATACTCT  147
      ||| |||||||||||||||||||||||||||||||||||||| |||||||
seq2  TATTCTCTGGCTTCTGTCACAGCCCTCTTCCCAAGTAGCTTTAATACTCT  141

seq1  GAGGCTCCAAGTGGATGTGGATCCCAGGGAGGAGCCCAACCAACTGCCAG  197
      |||||||||||||||||| ||| |||||||||||||||||||||||||||
seq2  GAGGCTCCAAGTGGATGT-GAT-CCAGGGAGGAGCCCAACCAACTGCCAG  189

seq1  TCTGAAGGATGGCACCGTGTTGCTGGCTTACACTGAGAGTTCTGGCTGGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGGATGGCACCGTGTTGCTGGCTTACACTGAGAGTTCTGGCTGGA  239

seq1  AGTTATTATACACCCCTGCCTTCCCTCTGAAGCCTTGTGTCCCTTGGGCA  297
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTA-TATACACCCCTGCCTTCCCTCTGAAGCCTTGTGTCCCTTGGGCA  288

seq1  TCCAGGGATGTGCCTCTCAGCAGTGGCTGAGCCAAGTAGTTACCTACAGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGATGTGCCTCTCAGCAGTGGCTGAGCCAAGTAGTTACCTACAGT  338

seq1  TCTCCTGGTA-TTCCCTGTTGGACTTTGGCTGGAGTCCAGCCAACCCATG  396
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGGTATTTCCCTGTTGGACTTTGGCTGGAGTCCAGCCAACCCATG  388

seq1  ATTCATTCCTAGGGCCACCTACACTTTTTTTTTTCTTTTCAATGTGTTTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTCCTAGGGCCACCTACACTTTTTTTTTTCTTTTCAATGTGTTTG  438

seq1  GAATGGAAACCAGGACCTTCTGAATTGGAGGCAAGTGCTGTAGCACTAGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGAAACCAGGACCTTCTGAATTGGAGGCAAGTGCTGTAGCACTAGG  488

seq1  CTACATCCCCACAGTTCCTCACTGAGGGTTCTAGGCAGGGACTTCACCCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCCCCACAGTTCCTCACTGAGGGTTCTAGGCAGGGACTTCACCCC  538

seq1  TGAGCCACGCCCCCAGCCCATCTCTACTTAGGAGAGGGAATTCCTCTTGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCACGCCCCCAGCCCATCTCTACTTAGGAGAGGGAATTCCTCTTGT  588

seq1  GAGCTCCTCCTATGGACACTGGACTATCCACCTAGAAGCTGAGCTGTGAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCTCCTATGGACACTGGACTATCCACCTAGAAGCTGAGCTGTGAG  638

seq1  ATGTTCTGTTAACTCCCAGATGGCCTTTGCATTGAGACCATCTTATATCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTGTTAACTCCCAGATGGCCTTTGCATTGAGACCATCTTATATCT  688

seq1  GTGGATCTTTGTCTGGGTCAGGGCTGTCCGAGGAGGCTCCTACAGCTGTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATCTTTGTCTGGGTCAGGGCTGTCCGAGGAGGCTCCTACAGCTGTG  738

seq1  ATATCTGCAACTGTCAGATCAGCTGCTTTCAGTCATTCATCAGCACATTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGCAACTGTCAGATCAGCTGCTTTCAGTCATTCATCAGCACATTT  788

seq1  TGGATTCTGCTTTCAAATAGTAATTAGGTGATGGGTGTGGTGGTTCATGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTCTGCTTTCAAATAGTAATTAGGTGATGGGTGTGGTGGTTCATGC  838

seq1  CTGCCTGTGATCCTAATCCCTCTAGAGATAGAGGCAGGAGGATGGATTAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGTGATCCTAATCCCTCTAGAGATAGAGGCAGGAGGATGGATTAT  888

seq1  TCCAGGCCAGCCTTGTCTACATAGTCAGACCCTGTCTGTGGGGTGGGAAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCCAGCCTTGTCTACATAGTCAGACCCTGTCTGTGGGGTGGGAAG  938

seq1  AGGATACAAACACAGACAAATAGAAAAAGAAACTCGGGGAACAGAGAGGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATACAAACACAGACAAATAGAAAAAGAAACTCGGGGAACAGAGAGGA  988

seq1  ACTGCTGGTTGTGGAGGATCCCCCACCTCTCAGCCCATTCTGCCCTAACG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGGTTGTGGAGGATCCCCCACCTCTCAGCCCATTCTGCCCTAACG  1038

seq1  CCAGCTCTCTCCTTTTAGCTAGGGAATGATTTCATCCGCTAAACATGTGG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCTCTCCTTTTAGCTAGGGAATGATTTCATCCGCTAAACATGTGG  1088

seq1  CTTCAAATTATGGCCTTATATAACACTTGAGTCGACTGCCCTGCTCTTTG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAATTATGGCCTTATATAACACTTGAGTCGACTGCCCTGCTCTTTG  1138

seq1  TGGGTCCCCACTCTGCCTCCTCTGATGAATTC  1178
      ||||||||||||||||||||||||||||||||
seq2  TGGGTCCCCACTCTGCCTCCTCTGATGAATTC  1170

seq1: chr8_73662979_73663906
seq2: B6Ng01-203E09.g_64_980

seq1  GAATTCATGCTGAGATGAACTTACTGGGAACTTTTCTATGATTCTTTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCTGAGATGAACTTACTGGGAACTTTTCTATGATTCTTTGTA  50

seq1  CAGGGATGAAGGTCGTGAGAGAACACCTGCCTTATGTGGGGATAGCCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATGAAGGTCGTGAGAGAACACCTGCCTTATGTGGGGATAGCCATG  100

seq1  CACTATATCCCTAGCACAGTAAATGAACATTTGAGTAGTCATAAATAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATATCCCTAGCACAGTAAATGAACATTTGAGTAGTCATAAATAAAT  150

seq1  AAGGCAATTCCAGTTATTTTCTTATATCAGAAGAAAATTAGCTTCATAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAATTCCAGTTATTTTCTTATATCAGAAGAAAATTAGCTTCATAGT  200

seq1  ATGTGGTGCTTAAAGGAGATGGGGCTCTTATTTAGCATTTGGGAATGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTGCTTAAAGGAGATGGGGCTCTTATTTAGCATTTGGGAATGTCC  250

seq1  CTAAATGTCCTTTCCATTTGCAGGACGTCACTCCATTATGCATGTGCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGTCCTTTCCATTTGCAGGACGTCACTCCATTATGCATGTGCCCA  300

seq1  CAACCATCCAGACGTGGTGGCACTATTATTAGAAAATAATTCCAGCATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATCCAGACGTGGTGGCACTATTATTAGAAAATAATTCCAGCATTG  350

seq1  ATATCCTGGATGATGCAGGCTGTACACCCTTGATTAAGGTAGCTATTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTGGATGATGCAGGCTGTACACCCTTGATTAAGGTAGCTATTGGC  400

seq1  CATCTGTTTTGATATGAACTGGACTAGAGGTTGTCCTTGTTTGGTTTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTTTTGATATGAACTGGACTAGAGGTTGTCCTTGTTTGGTTTCTG  450

seq1  TTGCTGTGATAAAACACTGATCAAAAACAACTCAGGAAAGGAAATGGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTGATAAAACACTGATCAAAAACAACTCAGGAAAGGAAATGGTTA  500

seq1  TTTGGCTTACATTTACACATCACAGATCATTCTCAAGGGGAACCAGGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTTACATTTACACATCACAGATCATTCTCAAGGGGAACCAGGGCT  550

seq1  GGAGCTCAAATCAGGAACTGGAGGGAAGAACTAACTGGAGTTCACAGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCAAATCAGGAACTGGAGGGAAGAACTAACTGGAGTTCACAGGAG  600

seq1  AATACAGCTTTTCCATGGCTTTTTCCAAGGCTTGCTCAGCCTCTTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGCTTTTCCATGGCTTTTTCCAAGGCTTGCTCAGCCTCTTTTTTT  650

seq1  TTTTTTTTTTTTTAATACAACTGAGGACTTTGTCCCAGGCATGTACCAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTAATACAACTGAGGACTTTGTCCCAGGCATGTACCAAC  700

seq1  CCCTAAAATCTGGGCTTTTCTACTTTCATCTAAATTAAAT-AAAAAAAAA  749
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCCTAAAATCTGGGCTTTTCTACTTTCATCTAAATTAAATAAAAAAAAAA  750

seq1  AAAAAGTCCATATAGTTGCCCAGAGGCCAGTTTCATAGAGGCATTTCCTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTCCATATAGTTGCCCAGAGGCCAGTTTCATAGAGGCATTTCCTC  800

seq1  CAGTGAGGATCTTTCCAGGTGTGTTAAGCTTGTGTCACATTGGCAAAAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  CAGTGAGGATCTTTCCAGGTGTGTTAAGCTTGTGTCACATTGGCAAAA--  848

seq1  GAAAAAAAAAAAAGAAAGAAAGAAAGAAAAAGAAAAAAAAGAAAAAAAAT  899
      | ||||||||||||||||||||||   |||||||||||   | |||||||
seq2  GGAAAAAAAAAAAGAAAGAAAGAA--GAAAAGAAAAAA---AGAAAAAAT  893

seq1  CCAAACCAAACAACTAATCTCTGCACTGC  928
      |  ||||||   ||| |||||||||||||
seq2  C--AACCAA--CACT-ATCTCTGCACTGC  917