BAC Information

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BAC

Clone NameB6Ng01-203O08
Chromosome8 (Build37)
Map Location 102,500,707 - 102,538,407
singlet/doubletdoublet
Overlap genenone
Upstream geneCdh8, A330008L17Rik, LOC667531
Downstream geneLOC100042069, LOC436054, LOC100042078, LOC100042086, LOC100042092, LOC384895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203O08.bB6Ng01-203O08.g
ACCGA023989GA023990
length1,1501,166
definitionB6Ng01-203O08.b B6Ng01-203O08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,500,707 - 102,501,869)(102,537,196 - 102,538,407)
sequence
gaattcaaacttcagttgatcatcataagatactttgcagaagaatatta
taaaatatccaaatatccatcaagtcctggtgtattcaagacctggactt
tattcgactagttttcattatcagatctctgaaataaagtattaatctct
tccaactgccatggcttaattgatatgtgaacatattgcttcaatcttac
acgaagaggtgggtgatttaatttaaataagcttagaaaggggagattga
attagtcaaggagaaggtgaagcctggccctcattaccattcttcctctt
tatttggagatgaatagtttccaaagtgtgagatatagttaagttagctt
tctactactataacaagtaagagagaaaatcaatttataaggtagaattg
gctcaacgtttttgaagttccaatccgtgattaattgatctcattgttag
agtcatggaatggaacaagattgaaaacctaagttcccatcacaaatcag
tcacacagagtgtgcacattcaagggtatgcataccctcatcaatgacct
acgatcccacatcttaatgtctttacttctttccaatgacactgacctag
agaccaacttttagcacagaaaactctgagtacaaaacactgtaacagaa
caccagaaaagccatcagaaaaactcttatttcactctgaactggagttt
tgttcatgacatacatactgctatctctctggaagcatacatcttgtgaa
tttctacagaaaggccaattaacatttgagaaagtgatttgaatggctga
tatttctcagaatttaaaggaaaacaaaaaacaaaaaaccttgacttatg
tgtaaagtcaggaggcattcccagttaagatgctggctgttgctcctatc
acactgttgatccagaaacatttttctttctgctgatagtgtcaggtaaa
gatgtttggagacattgaagaagagaattatctgcagaatgatgaaaagt
cttactgaaataatgtttgtgtagtttgtcgttcatagagacattaaatg
aaatagcagccatttgaaaagtaaatcctgatctcgagtactgctcattc
atttctgaatgtgggactgaaatatcctttctcttacaatgatttagcat


gaattccaagttagcctgagctatacagaaagattctgcctggaaaacaa
agcaaatgcatatattaaaaagagtctgggatataacctgtttccttatc
tagcctatggtaggatctctgttcaatttctagggcaaaaaacagaaaac
aaaaaacaaaacaaaaccaaaccacaacaacaactaataccaaataaaat
aacacttagaaatggaggttcagtaaacaggtagggtgaatttgattttc
accaatagttttaaatagtgaaatgttctatatatttaataacagccatt
tcaattttatatatagttttgtttccttatttaaaatactaaaatacaaa
ttttattaaatagttttgagctgcttttggaagataagattactatttta
tagcaaatgattaaattatatttaaaaaatacttatgtacctgtaacctg
tagtaaagcaataacattggtcttaataatgtattttaatgagtcttact
aagtttgtcccctcactacattgggaaaaggagaaatcttatgaaacttt
caggtattaaaatgacctttgtcatgtcatcataagcaatttattgttaa
agttcatagtctaggacacattgaagttatcaatataataatgccaatca
cctgtgaagttgcagagttgcttatgttcttagatgagagacagcaagag
agacttcaatacaggacataagaaaatccacatagcacacaggcccataa
catcaaacaatagggctatcattctgctcaaagctgttgaaatttttcta
attgaaaaatttatacccttagaaaatgattgtcaattttgttaacagcc
atggtggttattactcatgaggacttgatcatgtatgaaaagacagaagt
cattacgaagaacttctgcggaggctaagcatggcttcccattcatcaga
atctccgtttcatcagtggaatggctataaattcacaggtctgttttatt
acattgagatgtacttacagtttactaaaggacaaataagatcatgaaga
tagtagtgttcttagtttcagagaatctgtttgaagtattcttctgaact
agataactcggaacgagcttagtgaattggcatgggtatcattgagacga
atacattttggaaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_102500707_102501869
seq2: B6Ng01-203O08.b_47_1196

seq1  GAATTCAAACTTCAGTTGATCATCATAAGATACTTTGCAGAAGAATATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACTTCAGTTGATCATCATAAGATACTTTGCAGAAGAATATTA  50

seq1  TAAAATATCCAAATATCCATCAAGTCCTGGTGTATTCAAGACCTGGACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATCCAAATATCCATCAAGTCCTGGTGTATTCAAGACCTGGACTT  100

seq1  TATTCGACTAGTTTTCATTATCAGATCTCTGAAATAAAGTATTAATCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCGACTAGTTTTCATTATCAGATCTCTGAAATAAAGTATTAATCTCT  150

seq1  TCCAACTGCCATGGCTTAATTGATATGTGAACATATTGCTTCAATCTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACTGCCATGGCTTAATTGATATGTGAACATATTGCTTCAATCTTAC  200

seq1  ACGAAGAGGTGGGTGATTTAATTTAAATAAGCTTAGAAAGGGGAGATTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAGAGGTGGGTGATTTAATTTAAATAAGCTTAGAAAGGGGAGATTGA  250

seq1  ATTAGTCAAGGAGAAGGTGAAGCCTGGCCCTCATTACCATTCTTCCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTCAAGGAGAAGGTGAAGCCTGGCCCTCATTACCATTCTTCCTCTT  300

seq1  TATTTGGAGATGAATAGTTTCCAAAGTGTGAGATATAGTTAAGTTAGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGAGATGAATAGTTTCCAAAGTGTGAGATATAGTTAAGTTAGCTT  350

seq1  TCTACTACTATAACAAGTAAGAGAGAAAATCAATTTATAAGGTAGAATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTACTATAACAAGTAAGAGAGAAAATCAATTTATAAGGTAGAATTG  400

seq1  GCTCAACGTTTTTGAAGTTCCAATCCGTGATTAATTGATCTCATTGTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAACGTTTTTGAAGTTCCAATCCGTGATTAATTGATCTCATTGTTAG  450

seq1  AGTCATGGAATGGAACAAGATTGAAAACCTAAGTTCCCATCACAAATCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGGAATGGAACAAGATTGAAAACCTAAGTTCCCATCACAAATCAG  500

seq1  TCACACAGAGTGTGCACATTCAAGGGTATGCATACCCTCATCAATGACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACAGAGTGTGCACATTCAAGGGTATGCATACCCTCATCAATGACCT  550

seq1  ACGATCCCACATCTTAATGTCTTTACTTCTTTCCAATGACACTGACCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATCCCACATCTTAATGTCTTTACTTCTTTCCAATGACACTGACCTAG  600

seq1  AGACCAACTTTTAGCACAGAAAACTCTGAGTACAAAACACTGTAACAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAACTTTTAGCACAGAAAACTCTGAGTACAAAACACTGTAACAGAA  650

seq1  CACCAGAAAAGCCATCAGAAAAACTCTTATTTCACTCTGAACTGGAGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAAAAGCCATCAGAAAAACTCTTATTTCACTCTGAACTGGAGTTT  700

seq1  TGTTCATGACATACATACTGCTATCTCTCTGGAAGCATACATCTTGTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATGACATACATACTGCTATCTCTCTGGAAGCATACATCTTGTGAA  750

seq1  TTTCTACAGAAAGGCCAATTAACATTTGAGAAAGTGATTTGAATGGCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACAGAAAGGCCAATTAACATTTGAGAAAGTGATTTGAATGGCTGA  800

seq1  TATTTCTCAGAATTTAAAGGAAAACAAAAAACAAAAAACCTTGACTTATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTCAGAATTTAAAGGAAAACAAAAAACAAAAAACCTTGACTTATG  850

seq1  TGTAAAGTCAGGAGGCATTCCCAGTTAAGATGCTGGCTGTTGCTCCTATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGTCAGGAGGCATTCCCAGTTAAGATGCTGGCTGTTGCTCCTATC  900

seq1  ACACTGTTGATCCAGAAACATTTTTCTTTCTGCTGATAGTGTCAGGTAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTTGATCCAGAAACATTTTTCTTTCTGCTGATAGTGTCAGGTAAA  950

seq1  GATGTTTGGAGACAATTGAAGAAGAGAATTATCTGCAGAATGATGAAAAG  1000
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GATGTTTGGAGAC-ATTGAAGAAGAGAATTATCTGCAGAATGATGAAAAG  999

seq1  TCTTTACTGAAATAATGTTTGTGTTAGTTTGTCGGTTTCATAGAGACATT  1050
      || |||||||||||||||||||| ||||||||||  |||||||||||| |
seq2  TC-TTACTGAAATAATGTTTGTG-TAGTTTGTCG--TTCATAGAGACA-T  1044

seq1  TAAATGAAATAGCAGCAATTTGAAAAGTAAAATCCTGATTCTCGAGTACT  1100
      |||||||||||||||| ||||||||||| ||||||||| |||||||||||
seq2  TAAATGAAATAGCAGCCATTTGAAAAGT-AAATCCTGA-TCTCGAGTACT  1092

seq1  GCCTCCATCCTTTCTGGATGTGGGACTGGAAATATCTTTTCTCTTACAAA  1150
      | |||  || |||||| |||||||||| |||||||| ||||||||||  |
seq2  G-CTCATTCATTTCTGAATGTGGGACT-GAAATATCCTTTCTCTTAC--A  1138

seq1  AGGATTTTAGCAT  1163
      | || ||||||||
seq2  ATGA-TTTAGCAT  1150


seq1: chr8_102537196_102538407
seq2: B6Ng01-203O08.g_62_1227 (reverse)

seq1  AATTTTCAAAATGTATTCTGGTCTTCAAATGACCCACACAATGCCCCAAA  50
      ||||| ||||||||||||  ||||   |||||  |   | |||||    |
seq2  AATTTCCAAAATGTATTC--GTCT--CAATGATAC---CCATGCC----A  39

seq1  ATTTCTACTAAGCTCGTTTCTGAAGGTTATCTTAGTTTCTCAAGGAGAAT  100
      |||   |||||||||| ||| ||  |||||| |||||     || |||||
seq2  ATT--CACTAAGCTCG-TTCCGA--GTTATC-TAGTT----CAGAAGAAT  79

seq1  ACCTTCCAAACAGATTTCCTTCTTGAAAACTAAGACACCTACTTAATCTT  150
      ||  | ||||||||     ||||   |||||||||   |||||  ||| |
seq2  AC--TTCAAACAGA-----TTCTCTGAAACTAAGAACACTACT--ATC-T  119

seq1  TCATGGATTCTTTATTTTGTCCTTTTAGGTAAAACTGTAAGGTTACAATC  200
      |||||   ||||   ||||||| |||||   ||||||||||  ||| |||
seq2  TCATG--ATCTT--ATTTGTCC-TTTAG--TAAACTGTAAG--TAC-ATC  159

seq1  TCAATGTAATAAAACAGACCTGTGAATTTAATTAAGCCATTCCACTGATG  250
      ||||||||||||||||||||||||||||||    ||||||||||||||| 
seq2  TCAATGTAATAAAACAGACCTGTGAATTTA---TAGCCATTCCACTGAT-  205

seq1  GAAACGGAGATTTCTGATGAATGGGAAGCCATGCTTAGCCTCCGCAGAAG  300
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAAACGGAGA-TTCTGATGAATGGGAAGCCATGCTTAGCCTCCGCAGAAG  254

seq1  TTCTTCGTAATGACTTCTGTCTTTTCATACATGATCAAGTCCTCATGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCGTAATGACTTCTGTCTTTTCATACATGATCAAGTCCTCATGAGT  304

seq1  AATAACCACCATGGCTGTTAACAAAATTGACAATCATTTTCTAAGGGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCACCATGGCTGTTAACAAAATTGACAATCATTTTCTAAGGGTAT  354

seq1  AAATTTTTCAATTAGAAAAATTTCAACAGCTTTGAGCAGAATGATAGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTCAATTAGAAAAATTTCAACAGCTTTGAGCAGAATGATAGCCC  404

seq1  TATTGTTTGATGTTATGGGCCTGTGTGCTATGTGGATTTTCTTATGTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTTGATGTTATGGGCCTGTGTGCTATGTGGATTTTCTTATGTCCT  454

seq1  GTATTGAAGTCTCTCTTGCTGTCTCTCATCTAAGAACATAAGCAACTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGAAGTCTCTCTTGCTGTCTCTCATCTAAGAACATAAGCAACTCTG  504

seq1  CAACTTCACAGGTGATTGGCATTATTATATTGATAACTTCAATGTGTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCACAGGTGATTGGCATTATTATATTGATAACTTCAATGTGTCCT  554

seq1  AGACTATGAACTTTAACAATAAATTGCTTATGATGACATGACAAAGGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATGAACTTTAACAATAAATTGCTTATGATGACATGACAAAGGTCA  604

seq1  TTTTAATACCTGAAAGTTTCATAAGATTTCTCCTTTTCCCAATGTAGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATACCTGAAAGTTTCATAAGATTTCTCCTTTTCCCAATGTAGTGA  654

seq1  GGGGACAAACTTAGTAAGACTCATTAAAATACATTATTAAGACCAATGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACAAACTTAGTAAGACTCATTAAAATACATTATTAAGACCAATGTT  704

seq1  ATTGCTTTACTACAGGTTACAGGTACATAAGTATTTTTTAAATATAATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTTACTACAGGTTACAGGTACATAAGTATTTTTTAAATATAATTT  754

seq1  AATCATTTGCTATAAAATAGTAATCTTATCTTCCAAAAGCAGCTCAAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTTGCTATAAAATAGTAATCTTATCTTCCAAAAGCAGCTCAAAAC  804

seq1  TATTTAATAAAATTTGTATTTTAGTATTTTAAATAAGGAAACAAAACTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAATAAAATTTGTATTTTAGTATTTTAAATAAGGAAACAAAACTAT  854

seq1  ATATAAAATTGAAATGGCTGTTATTAAATATATAGAACATTTCACTATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAATTGAAATGGCTGTTATTAAATATATAGAACATTTCACTATTT  904

seq1  AAAACTATTGGTGAAAATCAAATTCACCCTACCTGTTTACTGAACCTCCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTATTGGTGAAAATCAAATTCACCCTACCTGTTTACTGAACCTCCA  954

seq1  TTTCTAAGTGTTATTTTATTTGGTATTAGTTGTTGTTGTGGTTTGGTTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAGTGTTATTTTATTTGGTATTAGTTGTTGTTGTGGTTTGGTTTT  1004

seq1  GTTTTGTTTTTTGTTTTCTGTTTTTTGCCCTAGAAATTGAACAGAGATCC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTTTGTTTTCTGTTTTTTGCCCTAGAAATTGAACAGAGATCC  1054

seq1  TACCATAGGCTAGATAAGGAAACAGGTTATATCCCAGACTCTTTTTAATA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATAGGCTAGATAAGGAAACAGGTTATATCCCAGACTCTTTTTAATA  1104

seq1  TATGCATTTGCTTTGTTTTCCAGGCAGAATCTTTCTGTATAGCTCAGGCT  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATTTGCTTTGTTTTCCAGGCAGAATCTTTCTGTATAGCTCAGGCT  1154

seq1  AACTTGGAATTC  1212
      ||||||||||||
seq2  AACTTGGAATTC  1166


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